Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 6.0e-169 597.4 302 100.0
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 2.3e-136 489.2 262 95.4
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 1.5e-79 300.4 302 54.6
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 2.9e-78 296.2 308 54.9
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 8.3e-78 294.7 310 55.2
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.6e-76 290.4 215 73.5
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 2.9e-75 286.2 307 53.4
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 1.2e-73 280.8 312 50.3
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 1.6e-73 280.4 315 50.2
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 2.1e-73 280.0 308 52.3
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 2.1e-73 280.0 312 51.6
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 2.8e-73 279.6 308 51.0
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 4.7e-73 278.9 308 48.4
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 1.0e-72 277.7 308 51.3
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 1.0e-72 277.7 308 51.3
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 1.8e-72 276.9 303 51.5
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.8e-72 276.9 306 51.6
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 1.8e-72 276.9 308 50.0
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 2.3e-72 276.6 315 52.1
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 2.3e-72 276.6 308 51.3
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 4.0e-72 275.8 310 50.0
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 4.0e-72 275.8 307 49.5
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 5.2e-72 275.4 304 49.3
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 5.2e-72 275.4 313 49.2
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 5.2e-72 275.4 308 49.0
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 1.2e-71 274.2 307 50.8
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 1.2e-71 274.2 314 48.7
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 1.2e-71 274.2 307 48.2
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 1.5e-71 273.9 312 47.8
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.5e-71 273.9 308 48.4
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 1.5e-71 273.9 315 48.9
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 1.5e-71 273.9 313 49.2
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 1.5e-71 273.9 308 50.6
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 2.0e-71 273.5 308 49.4
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 2.0e-71 273.5 312 48.7
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 2.0e-71 273.5 308 50.0
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 4.4e-71 272.3 309 50.2
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 4.4e-71 272.3 308 51.0
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 5.8e-71 271.9 308 48.4
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 5.8e-71 271.9 315 49.5
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 7.5e-71 271.6 311 50.5
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 7.5e-71 271.6 307 49.8
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 7.5e-71 271.6 308 49.0
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 9.8e-71 271.2 310 49.4
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 9.8e-71 271.2 307 49.5
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 9.8e-71 271.2 313 49.8
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 9.8e-71 271.2 308 49.0
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 1.3e-70 270.8 315 47.9
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 1.3e-70 270.8 313 48.9
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 1.3e-70 270.8 308 50.6
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 1.3e-70 270.8 304 50.7
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 1.7e-70 270.4 309 48.2
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 1.7e-70 270.4 308 50.6
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 2.2e-70 270.0 305 50.8
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 2.9e-70 269.6 310 50.0
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.9e-70 269.6 308 49.0
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.9e-70 269.6 302 50.0
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 3.7e-70 269.2 312 47.4
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 3.7e-70 269.2 308 47.7
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.7e-70 269.2 307 48.9
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 8.3e-70 268.1 312 47.1
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.1e-69 267.7 311 50.5
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 1.4e-69 267.3 310 49.0
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.4e-69 267.3 302 49.0
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 2.4e-69 266.5 313 47.3
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 2.4e-69 266.5 308 49.4
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 2.4e-69 266.5 308 49.0
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 2.4e-69 266.5 323 46.4
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 3.2e-69 266.2 303 50.2
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 3.2e-69 266.2 302 48.7
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 3.2e-69 266.2 309 48.2
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 4.1e-69 265.8 309 47.9
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 4.1e-69 265.8 309 48.9
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 4.1e-69 265.8 314 47.1
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 9.2e-69 264.6 271 52.4
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 1.2e-68 264.2 311 49.8
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.0e-68 263.5 305 49.5
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.0e-68 263.5 311 48.6
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.7e-68 263.1 301 50.2
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 2.7e-68 263.1 309 47.9
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 3.5e-68 262.7 309 47.6
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 3.5e-68 262.7 300 51.0
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 4.6e-68 262.3 307 48.9
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 6.0e-68 261.9 308 47.7
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 1.3e-67 260.8 338 44.4
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 1.3e-67 260.8 279 50.5
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.3e-67 260.8 303 50.8
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 3.0e-67 259.6 266 52.3
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 3.9e-67 259.2 315 46.7
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 3.9e-67 259.2 313 46.3
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 5.0e-67 258.8 307 50.8
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 5.0e-67 258.8 304 49.7
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 6.6e-67 258.5 331 45.0
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 6.6e-67 258.5 308 48.1
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 8.6e-67 258.1 314 46.5
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 1.9e-66 256.9 296 49.3
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 4.3e-66 255.8 309 50.2
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 5.6e-66 255.4 305 48.5
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 9.5e-66 254.6 329 47.4
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 9.5e-66 254.6 308 47.4
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 9.5e-66 254.6 311 47.3
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 8.1e-65 251.5 271 50.9
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.1e-64 251.1 335 46.3
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 1.4e-64 250.8 311 46.0
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 2.3e-64 250.0 284 51.1
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 3.1e-64 249.6 293 49.8
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 3.1e-64 249.6 320 45.0
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 6.8e-64 248.4 269 52.4
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 1.5e-63 247.3 357 42.6
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 2.0e-63 246.9 271 53.1
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 4.4e-63 245.7 281 50.2
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 5.8e-63 245.4 270 52.6
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 5.8e-63 245.4 342 43.0
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 7.5e-63 245.0 336 45.2
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 7.5e-63 245.0 308 46.8
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 1.3e-62 244.2 334 45.5
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 4.6e-60 235.7 309 46.0
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 7.3e-58 228.4 300 44.7
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 1.2e-57 227.6 252 53.2
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 1.1e-56 224.6 234 53.4
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 2.0e-55 220.3 304 44.4
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 1.3e-54 217.6 234 50.4
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 9.2e-53 211.5 320 42.8
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 2.3e-51 206.8 305 44.3
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 7.3e-50 201.8 258 46.9
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 7.3e-50 201.8 277 45.8
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 2.1e-49 200.3 229 49.8
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 8.1e-49 198.4 307 41.7
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 1.3e-46 191.0 267 43.8
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.6e-44 184.1 196 51.0
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 4.6e-44 182.6 169 56.8
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 6.0e-44 182.2 149 60.4
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 7.8e-44 181.8 446 32.3
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 3.0e-43 179.9 178 52.8
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.0e-43 179.9 163 58.3
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 3.9e-43 179.5 202 47.0
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 7.3e-42 175.3 224 46.4
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 9.6e-42 174.9 167 54.5
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.6e-41 174.1 203 47.8
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 8.1e-41 171.8 155 55.5
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 3.1e-40 169.9 201 47.8
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 4.4e-39 166.0 310 38.4
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 8.4e-38 161.8 146 58.9
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.1e-36 157.1 224 42.4
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.1e-34 151.4 209 44.5
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 2.5e-34 150.2 149 51.0
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 2.5e-34 150.2 139 56.8
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 1.8e-32 144.1 132 55.3
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 1.5e-31 141.0 193 44.6
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 8.4e-30 135.2 193 40.9
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 7.1e-29 132.1 134 50.0
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 1.9e-26 124.0 161 48.4
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 1.4e-24 117.9 113 60.2
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 5.8e-23 112.5 180 41.1
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 5.8e-23 112.5 106 53.8
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 1.8e-19 100.9 92 56.5
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 3.0e-19 100.1 112 49.1
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 3.0e-19 100.1 167 41.3
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 4.3e-18 96.3 107 49.5
SMO137G0371 Selaginella moellendorffii HOM05D013406 ORTHO05D375628 4.3e-18 96.3 86 67.4
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 6.3e-17 92.4 139 41.7
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.4e-15 86.7 183 35.5
SMO170G0022 Selaginella moellendorffii HOM05D003898 ORTHO05D374340 2.7e-12 77.0 189 35.4
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.5e-12 76.6 60 63.3
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 1.0e-11 75.1 90 46.7
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 5.7e-10 69.3 83 47.0
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 2.4e-08 63.9 81 45.7
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 6.9e-08 62.4 80 45.0
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 1.2e-07 61.6 81 42.0
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.5e-07 61.2 43 62.8
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 3.4e-07 60.1 43 62.8


User provided reference genes

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