Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 6.3e-51 203.8 99 100.0
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 1.5e-23 112.8 97 53.6
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 6.8e-21 104.0 98 51.0
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 2.0e-20 102.4 99 49.5
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 2.2e-19 99.0 96 51.0
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 3.7e-19 98.2 96 50.0
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 4.9e-19 97.8 96 50.0
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 6.4e-19 97.4 96 50.0
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 6.4e-19 97.4 96 50.0
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 8.3e-19 97.1 96 49.0
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 8.3e-19 97.1 96 49.0
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 8.3e-19 97.1 96 49.0
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 1.4e-18 96.3 96 49.0
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 1.4e-18 96.3 96 49.0
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 1.4e-18 96.3 96 49.0
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 1.4e-18 96.3 96 49.0
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 1.4e-18 96.3 96 49.0
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.4e-18 96.3 98 46.9
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 1.9e-18 95.9 96 50.0
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 1.9e-18 95.9 98 49.0
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 3.2e-18 95.1 96 47.9
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 3.2e-18 95.1 96 47.9
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 3.2e-18 95.1 96 47.9
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 3.2e-18 95.1 98 46.9
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 4.1e-18 94.7 98 46.9
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 4.1e-18 94.7 98 46.9
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 5.4e-18 94.4 96 46.9
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 5.4e-18 94.4 96 46.9
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 5.4e-18 94.4 97 47.4
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 7.0e-18 94.0 98 46.9
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 7.0e-18 94.0 98 44.9
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 1.2e-17 93.2 98 46.9
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 1.2e-17 93.2 96 46.9
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 1.2e-17 93.2 98 44.9
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 1.2e-17 93.2 98 48.0
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.2e-17 93.2 98 45.9
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 1.2e-17 93.2 98 44.9
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 1.6e-17 92.8 98 48.0
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 1.6e-17 92.8 98 44.9
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 2.0e-17 92.4 98 46.9
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.0e-17 92.4 98 44.9
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.0e-17 92.4 98 45.9
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.0e-17 92.4 98 45.9
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 2.7e-17 92.0 96 45.8
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 2.7e-17 92.0 98 43.9
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 2.7e-17 92.0 98 44.9
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 2.7e-17 92.0 98 45.9
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 2.7e-17 92.0 98 44.9
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 2.7e-17 92.0 98 45.9
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 2.7e-17 92.0 96 47.9
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 2.7e-17 92.0 98 44.9
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 2.7e-17 92.0 98 45.9
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 2.7e-17 92.0 98 46.9
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 3.5e-17 91.7 98 45.9
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 3.5e-17 91.7 98 45.9
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 3.5e-17 91.7 98 44.9
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 3.5e-17 91.7 98 46.9
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 3.5e-17 91.7 98 45.9
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 3.5e-17 91.7 98 45.9
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 4.6e-17 91.3 98 45.9
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 4.6e-17 91.3 96 45.8
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 4.6e-17 91.3 98 46.9
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 4.6e-17 91.3 98 44.9
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 4.6e-17 91.3 98 45.9
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 6.0e-17 90.9 98 45.9
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 6.0e-17 90.9 96 45.8
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 6.0e-17 90.9 98 44.9
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 6.0e-17 90.9 98 43.9
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 6.0e-17 90.9 98 44.9
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 6.0e-17 90.9 98 45.9
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 6.0e-17 90.9 98 45.9
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 6.0e-17 90.9 98 43.9
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 6.0e-17 90.9 98 43.9
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 7.8e-17 90.5 98 45.9
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 7.8e-17 90.5 98 44.9
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 7.8e-17 90.5 98 43.9
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 7.8e-17 90.5 98 45.9
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 7.8e-17 90.5 98 45.9
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 7.8e-17 90.5 98 42.9
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 7.8e-17 90.5 98 44.9
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.0e-16 90.1 98 42.9
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 1.0e-16 90.1 98 42.9
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 1.0e-16 90.1 98 43.9
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 1.0e-16 90.1 98 45.9
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.0e-16 90.1 98 44.9
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.0e-16 90.1 98 44.9
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.0e-16 90.1 98 44.9
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 1.3e-16 89.7 98 44.9
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.3e-16 89.7 98 44.9
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.3e-16 89.7 98 44.9
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 1.3e-16 89.7 98 43.9
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 1.7e-16 89.4 98 44.9
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.7e-16 89.4 98 41.8
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 2.3e-16 89.0 98 43.9
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 3.0e-16 88.6 98 41.8
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 3.9e-16 88.2 98 42.9
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 3.9e-16 88.2 98 41.8
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 3.9e-16 88.2 98 41.8
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 3.9e-16 88.2 98 43.9
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 3.9e-16 88.2 98 43.9
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 6.6e-16 87.4 96 43.8
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 6.6e-16 87.4 96 43.8
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 6.6e-16 87.4 96 43.8
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 6.6e-16 87.4 98 45.9
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 6.6e-16 87.4 98 42.9
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 8.6e-16 87.0 95 47.4
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 8.6e-16 87.0 97 44.3
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 1.1e-15 86.7 98 41.8
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 1.1e-15 86.7 98 43.9
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.1e-15 86.7 98 41.8
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 2.5e-15 85.5 98 41.8
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 2.5e-15 85.5 96 42.7
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 2.5e-15 85.5 96 42.7
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 7.3e-15 84.0 103 43.7
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 9.5e-15 83.6 97 43.3
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 1.2e-14 83.2 99 43.4
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 1.6e-14 82.8 95 42.1
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 2.1e-14 82.4 79 50.6
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 2.1e-14 82.4 98 41.8
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 1.1e-13 80.1 105 41.0
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 1.2e-12 76.6 98 41.8
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 1.2e-12 76.6 98 41.8
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 1.5e-12 76.3 85 45.9
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 1.5e-12 76.3 85 44.7
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 3.4e-12 75.1 90 44.4
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 4.4e-12 74.7 98 38.8
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 9.9e-12 73.6 94 41.5
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.3e-11 73.2 96 39.6
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 1.7e-11 72.8 73 50.7
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 4.9e-11 71.2 80 43.8
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 4.9e-11 71.2 84 45.2
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.9e-10 69.3 99 41.4
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 5.4e-10 67.8 97 39.2
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 5.4e-10 67.8 93 41.9
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 9.2e-10 67.0 65 53.8
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.1e-09 65.9 93 39.8
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.7e-09 65.5 64 51.6
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 4.6e-09 64.7 78 42.3
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 6.0e-09 64.3 81 42.0
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 1.3e-08 63.2 64 50.0
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 2.3e-08 62.4 89 41.6
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 5.1e-08 61.2 85 37.6
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.9e-07 59.3 57 47.4
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 3.3e-07 58.5 64 48.4
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 5.6e-07 57.8 75 40.0
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 5.6e-07 57.8 65 49.2
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 7.3e-07 57.4 57 47.4


User provided reference genes

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