Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 6.2e-81 303.9 137 100.0
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 6.0e-76 287.3 137 95.6
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.2e-70 268.9 137 89.1
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 8.7e-51 203.8 129 62.8
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 8.7e-51 203.8 133 64.7
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 1.5e-50 203.0 133 61.7
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 1.9e-50 202.6 130 63.8
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 1.9e-50 202.6 130 63.8
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 3.3e-50 201.8 130 63.8
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 4.3e-50 201.4 130 63.8
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 5.7e-50 201.1 130 62.3
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 5.7e-50 201.1 132 65.9
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 7.4e-50 200.7 130 63.8
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 1.3e-49 199.9 131 64.9
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 1.6e-49 199.5 133 62.4
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 2.8e-49 198.7 133 61.7
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 6.3e-49 197.6 131 62.6
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 6.3e-49 197.6 130 63.1
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 8.2e-49 197.2 135 61.5
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 8.2e-49 197.2 132 62.9
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 8.2e-49 197.2 132 64.4
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.4e-48 196.4 130 63.1
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.4e-48 196.4 133 63.2
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 1.4e-48 196.4 133 59.4
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 1.8e-48 196.1 130 60.8
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 1.8e-48 196.1 138 63.0
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 2.4e-48 195.7 130 60.8
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 2.4e-48 195.7 133 63.2
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 2.4e-48 195.7 130 63.1
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 2.4e-48 195.7 133 60.9
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 3.1e-48 195.3 129 62.8
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 3.1e-48 195.3 132 62.1
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 6.9e-48 194.1 133 59.4
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 6.9e-48 194.1 130 63.1
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 6.9e-48 194.1 130 63.1
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 9.0e-48 193.7 130 61.5
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 9.0e-48 193.7 133 61.7
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.2e-47 193.4 132 62.1
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.2e-47 193.4 130 63.1
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 1.2e-47 193.4 131 60.3
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 1.2e-47 193.4 133 62.4
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 1.2e-47 193.4 129 61.2
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 1.5e-47 193.0 130 60.8
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 2.0e-47 192.6 130 62.3
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.6e-47 192.2 132 62.1
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.6e-47 192.2 133 60.2
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 2.6e-47 192.2 133 62.4
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 2.6e-47 192.2 133 61.7
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 2.6e-47 192.2 130 59.2
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 3.4e-47 191.8 130 60.8
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 3.4e-47 191.8 129 63.6
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 4.5e-47 191.4 130 63.1
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 4.5e-47 191.4 130 60.0
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 4.5e-47 191.4 130 62.3
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 4.5e-47 191.4 129 61.2
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 5.9e-47 191.0 130 60.8
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 5.9e-47 191.0 129 63.6
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 7.7e-47 190.7 131 63.4
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 7.7e-47 190.7 132 61.4
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 7.7e-47 190.7 123 63.4
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 1.3e-46 189.9 131 61.1
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.3e-46 189.9 130 60.8
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 1.3e-46 189.9 131 61.1
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 1.7e-46 189.5 130 58.5
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 1.7e-46 189.5 133 59.4
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 1.7e-46 189.5 133 60.9
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 1.7e-46 189.5 133 63.2
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.2e-46 189.1 133 61.7
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 2.9e-46 188.7 130 60.0
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 5.0e-46 188.0 133 60.9
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 5.0e-46 188.0 130 57.7
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 5.0e-46 188.0 133 59.4
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 6.5e-46 187.6 130 60.8
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 8.5e-46 187.2 126 60.3
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 8.5e-46 187.2 132 59.1
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 1.1e-45 186.8 128 61.7
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.9e-45 186.0 130 59.2
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 2.5e-45 185.7 133 58.6
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 2.5e-45 185.7 131 58.0
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 2.5e-45 185.7 132 61.4
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 2.5e-45 185.7 129 60.5
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 3.2e-45 185.3 133 60.2
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 4.2e-45 184.9 128 60.9
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 5.5e-45 184.5 132 59.1
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 5.5e-45 184.5 131 58.8
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 5.5e-45 184.5 130 60.0
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 5.5e-45 184.5 130 56.9
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.5e-45 184.5 130 58.5
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 7.2e-45 184.1 133 58.6
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 7.2e-45 184.1 120 63.3
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 9.4e-45 183.7 134 56.7
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 9.4e-45 183.7 131 55.7
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 1.2e-44 183.3 130 58.5
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 1.2e-44 183.3 138 59.4
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 1.6e-44 183.0 132 58.3
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.6e-44 183.0 130 59.2
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 1.6e-44 183.0 133 57.1
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 2.1e-44 182.6 131 56.5
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 2.1e-44 182.6 129 58.1
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 2.1e-44 182.6 133 58.6
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 2.7e-44 182.2 130 60.0
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.7e-44 182.2 130 57.7
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 3.6e-44 181.8 119 63.0
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 3.6e-44 181.8 133 59.4
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.6e-44 181.4 117 63.2
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 1.0e-43 180.3 133 57.1
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 1.4e-43 179.9 138 58.0
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 1.8e-43 179.5 131 55.7
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 1.8e-43 179.5 131 55.7
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 2.3e-43 179.1 131 56.5
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 2.3e-43 179.1 131 56.5
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.3e-43 179.1 130 56.9
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 3.9e-43 178.3 133 56.4
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 6.7e-43 177.6 117 62.4
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 8.8e-43 177.2 131 55.0
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 8.8e-43 177.2 131 55.7
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 8.8e-43 177.2 131 55.7
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 1.1e-42 176.8 120 60.8
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.5e-42 176.4 117 62.4
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 4.3e-42 174.9 120 60.8
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 5.7e-42 174.5 117 62.4
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 9.7e-42 173.7 169 47.3
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 1.7e-41 172.9 129 58.1
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 2.2e-41 172.6 117 60.7
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 3.7e-41 171.8 103 67.0
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 8.2e-41 170.6 117 59.8
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 1.8e-40 169.5 101 68.3
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 5.3e-40 167.9 119 59.7
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 6.9e-40 167.5 126 56.3
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 9.1e-40 167.2 112 61.6
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 3.4e-39 165.2 119 59.7
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 3.2e-37 158.7 124 56.5
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 9.4e-37 157.1 118 56.8
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 7.9e-36 154.1 142 48.6
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 7.4e-34 147.5 117 55.6
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.3e-32 141.4 130 45.4
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.0e-32 141.0 130 49.2
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 3.5e-31 138.7 99 59.6
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 4.5e-31 138.3 119 52.1
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 1.1e-29 133.7 134 48.5
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 1.4e-29 133.3 99 57.6
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 2.0e-26 122.9 97 55.7
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.3e-25 120.2 85 57.6
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 2.8e-25 119.0 75 64.0
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.7e-22 109.8 72 66.7
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 3.0e-19 99.0 74 58.1
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.2e-15 87.0 108 38.0
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 2.0e-15 86.3 80 50.0
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.0e-14 84.0 63 55.6
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.5e-13 78.2 78 42.3


User provided reference genes

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