Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.5e-79 299.3 137 100.0
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.1e-69 266.5 137 89.1
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 3.5e-68 261.5 137 89.1
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 1.9e-45 186.0 133 58.6
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 2.5e-45 185.7 129 59.7
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 9.4e-45 183.7 130 60.8
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 9.4e-45 183.7 130 60.8
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 9.4e-45 183.7 130 60.8
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 1.2e-44 183.3 132 61.4
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 1.2e-44 183.3 132 59.8
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 1.6e-44 183.0 135 59.3
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 1.6e-44 183.0 130 60.8
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 4.6e-44 181.4 134 61.9
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 4.6e-44 181.4 132 59.8
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 4.6e-44 181.4 133 59.4
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 6.1e-44 181.0 133 58.6
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 7.9e-44 180.6 130 61.5
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 1.0e-43 180.3 130 58.5
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 1.4e-43 179.9 130 58.5
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 1.4e-43 179.9 132 61.4
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 1.8e-43 179.5 130 59.2
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 1.8e-43 179.5 129 60.5
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 2.3e-43 179.1 130 59.2
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 3.0e-43 178.7 130 60.0
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 3.9e-43 178.3 129 57.4
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 6.7e-43 177.6 130 60.8
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 8.8e-43 177.2 130 59.2
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 8.8e-43 177.2 130 57.7
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.1e-42 176.8 133 59.4
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 1.1e-42 176.8 130 59.2
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 1.1e-42 176.8 131 58.8
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 1.5e-42 176.4 133 57.1
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 2.5e-42 175.6 130 57.7
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 2.5e-42 175.6 130 57.7
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 2.5e-42 175.6 131 59.5
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 3.3e-42 175.3 130 57.7
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 3.3e-42 175.3 130 60.0
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 4.3e-42 174.9 132 59.1
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 4.3e-42 174.9 129 60.5
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 4.3e-42 174.9 133 55.6
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.3e-42 174.9 130 60.0
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 4.3e-42 174.9 130 57.7
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 4.3e-42 174.9 134 57.5
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 4.3e-42 174.9 130 55.4
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 5.7e-42 174.5 131 58.8
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 5.7e-42 174.5 129 60.5
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 7.4e-42 174.1 132 59.1
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 7.4e-42 174.1 130 59.2
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 7.4e-42 174.1 130 59.2
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 7.4e-42 174.1 130 56.9
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 7.4e-42 174.1 132 59.1
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 9.7e-42 173.7 129 58.1
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 9.7e-42 173.7 129 58.1
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 9.7e-42 173.7 129 57.4
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 2.2e-41 172.6 128 59.4
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.2e-41 172.6 132 58.3
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 2.2e-41 172.6 132 59.1
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 2.2e-41 172.6 130 58.5
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.2e-41 172.6 130 58.5
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 2.2e-41 172.6 115 62.6
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 2.2e-41 172.6 130 58.5
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 2.2e-41 172.6 130 58.5
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 2.2e-41 172.6 130 57.7
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 3.7e-41 171.8 130 55.4
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 3.7e-41 171.8 133 57.1
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 3.7e-41 171.8 133 57.1
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 3.7e-41 171.8 126 57.1
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 8.2e-41 170.6 130 60.0
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 8.2e-41 170.6 133 57.1
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 8.2e-41 170.6 130 54.6
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 1.1e-40 170.2 130 56.9
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.1e-40 170.2 130 59.2
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 1.4e-40 169.9 129 56.6
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 1.4e-40 169.9 130 53.8
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 1.8e-40 169.5 130 57.7
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 1.8e-40 169.5 133 59.4
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 1.8e-40 169.5 129 56.6
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 1.8e-40 169.5 130 56.9
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 2.4e-40 169.1 129 58.1
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 3.1e-40 168.7 129 58.9
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 3.1e-40 168.7 134 58.2
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 4.1e-40 168.3 130 54.6
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.9e-40 167.5 115 60.9
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 6.9e-40 167.5 130 55.4
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 9.1e-40 167.2 129 56.6
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 9.1e-40 167.2 114 63.2
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.2e-39 166.8 130 53.8
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.2e-39 166.8 130 54.6
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 1.2e-39 166.8 130 55.4
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 1.2e-39 166.8 133 57.9
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 1.5e-39 166.4 130 56.9
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 1.5e-39 166.4 130 54.6
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 1.5e-39 166.4 128 57.0
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 1.5e-39 166.4 130 54.6
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.5e-39 166.4 130 57.7
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 1.5e-39 166.4 129 55.0
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.0e-39 166.0 130 54.6
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 2.0e-39 166.0 129 57.4
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 2.6e-39 165.6 132 55.3
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.6e-39 165.6 130 56.2
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 2.6e-39 165.6 129 55.0
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 3.4e-39 165.2 115 60.0
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 4.5e-39 164.9 130 56.9
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 4.5e-39 164.9 103 65.0
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 7.7e-39 164.1 130 53.1
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 7.7e-39 164.1 130 53.1
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 7.7e-39 164.1 130 53.1
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 7.7e-39 164.1 130 55.4
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 7.7e-39 164.1 129 54.3
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.0e-38 163.7 130 53.8
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 2.2e-38 162.5 112 59.8
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 2.2e-38 162.5 101 66.3
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.9e-38 162.2 115 59.1
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 3.8e-38 161.8 130 53.1
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 5.0e-38 161.4 129 52.7
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 8.5e-38 160.6 115 60.0
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.1e-37 160.2 115 57.4
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 1.1e-37 160.2 115 60.0
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 1.9e-37 159.5 129 51.9
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 1.9e-37 159.5 134 55.2
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 2.5e-37 159.1 130 53.1
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 3.2e-37 158.7 130 53.8
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 1.2e-36 156.8 131 54.2
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 2.1e-36 156.0 129 51.2
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 3.6e-36 155.2 115 58.3
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 6.1e-36 154.5 115 57.4
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 7.9e-36 154.1 115 57.4
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 7.9e-36 154.1 115 56.5
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 2.3e-35 152.5 117 55.6
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 3.9e-35 151.8 169 44.4
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 4.4e-34 148.3 119 56.3
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 8.2e-33 144.1 119 54.6
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 4.1e-32 141.7 125 54.4
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 2.9e-30 135.6 142 44.4
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.5e-30 134.4 130 44.6
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.2e-28 130.2 113 51.3
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.7e-27 124.4 130 46.2
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 4.4e-26 121.7 99 54.5
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 9.7e-26 120.6 115 47.8
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 8.2e-25 117.5 85 56.5
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 1.6e-23 113.2 130 44.6
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 2.0e-23 112.8 99 52.5
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 7.2e-21 104.4 97 49.5
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 4.0e-19 98.6 75 57.3
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.4e-16 90.1 69 60.9
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 1.4e-16 90.1 74 54.1
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 2.0e-15 86.3 80 50.0
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.0e-14 81.6 108 36.1
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.2e-13 79.0 63 52.4
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.0e-11 73.9 78 41.0


User provided reference genes

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