Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO134G0014 Selaginella moellendorffii HOM05D002510 ORTHO05D006928 4.1e-127 458.0 221 100.0
SEGI_15474 Sequoiadendron giganteum HOM05D002510 ORTHO05D006928 4.2e-47 192.2 207 52.2
Sc20g0001820 Simmondsia chinensis HOM05D002510 ORTHO05D006928 1.0e-45 187.6 219 46.6
Eucgr.G02836 Eucalyptus grandis HOM05D002510 ORTHO05D006928 1.4e-45 187.2 203 48.3
CsaV3_6G036450 Cucumis sativus L. HOM05D002510 ORTHO05D006928 3.0e-45 186.0 214 47.2
PGR142G1169 Punica granatum HOM05D002510 ORTHO05D006928 3.0e-45 186.0 216 47.7
ClCG08G007520 Citrullus lanatus HOM05D002510 ORTHO05D006928 5.2e-45 185.3 207 47.3
MELO3C019798.2 Cucumis melo HOM05D002510 ORTHO05D006928 6.8e-45 184.9 214 46.7
Lsat_1_v5_gn_2_112320 Lactuca sativa HOM05D002510 ORTHO05D006928 1.2e-44 184.1 213 46.9
RcHm_v2.0_Chr1g0363321 Rosa chinensis HOM05D002510 ORTHO05D006928 1.2e-44 184.1 206 48.5
Potri.008G039300 Populus trichocarpa HOM05D002510 ORTHO05D006928 1.5e-44 183.7 209 47.8
Sabra08G0027000 Salix brachista HOM05D002510 ORTHO05D006928 1.5e-44 183.7 209 47.4
Nitab4.5_0001053g0060 Nicotiana tabacum HOM05D002510 ORTHO05D006928 2.0e-44 183.3 210 47.6
Gohir.A10G205600 Gossypium hirsutum HOM05D002510 ORTHO05D006928 2.6e-44 183.0 210 47.6
Lj1C913T4 Lonicera japonica HOM05D002510 ORTHO05D006928 2.6e-44 183.0 205 47.3
EL10Ac3g05855 Beta vulgaris HOM05D002510 ORTHO05D006928 3.4e-44 182.6 203 46.8
Aqoxy1G01228 Aquilegia oxysepala HOM05D002510 ORTHO05D006928 4.4e-44 182.2 209 47.4
MD01G1108300 Malus domestica HOM05D002510 ORTHO05D006928 4.4e-44 182.2 210 47.1
Thecc.10G074800 Theobroma cacao HOM05D002510 ORTHO05D006928 4.4e-44 182.2 205 48.3
Nitab4.5_0002524g0010 Nicotiana tabacum HOM05D002510 ORTHO05D006928 5.7e-44 181.8 210 46.7
Prupe.2G213200 Prunus persica HOM05D002510 ORTHO05D006928 5.7e-44 181.8 210 47.1
ATR0048G011 Amborella trichopoda HOM05D002510 ORTHO05D006928 7.5e-44 181.4 211 46.0
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 7.5e-44 181.4 206 47.6
FAN03G1741 Fragaria x ananassa HOM05D002510 ORTHO05D006928 7.5e-44 181.4 206 47.6
Lj5g0027397 Lotus japonicus HOM05D002510 ORTHO05D006928 7.5e-44 181.4 217 47.0
DCAR_019102 Daucus carota HOM05D002510 ORTHO05D006928 9.8e-44 181.0 210 45.7
FvH4_7g19440 Fragaria vesca HOM05D002510 ORTHO05D006928 9.8e-44 181.0 206 47.1
FAN06G0282 Fragaria x ananassa HOM05D002510 ORTHO05D006928 9.8e-44 181.0 206 47.1
CSS0017911 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.3e-43 180.6 210 46.7
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 1.3e-43 180.6 206 47.6
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 1.3e-43 180.6 206 47.6
Medtr1g095000 Medicago truncatula HOM05D002510 ORTHO05D006928 1.7e-43 180.3 210 46.7
MSTRG.9172 Avicennia marina HOM05D002510 ORTHO05D006928 2.2e-43 179.9 209 47.4
Cc02_g11320 Coffea canephora HOM05D002510 ORTHO05D006928 2.2e-43 179.9 209 47.4
Duzib128G0305 Durio zibethinus HOM05D002510 ORTHO05D006928 2.2e-43 179.9 205 48.8
Glyma.10G210800 Glycine max HOM05D002510 ORTHO05D006928 2.2e-43 179.9 205 47.8
Duzib114G0372 Durio zibethinus HOM05D002510 ORTHO05D006928 2.8e-43 179.5 209 46.9
Sed0007153 Sechium edule HOM05D002510 ORTHO05D006928 2.8e-43 179.5 214 45.3
GSVIVG01016268001 Vitis vinifera HOM05D002510 ORTHO05D006928 2.8e-43 179.5 209 46.9
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 3.7e-43 179.1 207 46.9
Dinv31320 Davidia involucrata HOM05D002510 ORTHO05D006928 3.7e-43 179.1 203 46.8
HanXRQChr14g0456861 Helianthus annuus HOM05D002510 ORTHO05D006928 3.7e-43 179.1 208 47.6
SGA_v2.0_scaffold62G21410 Striga asiatica HOM05D002510 ORTHO05D006928 3.7e-43 179.1 201 48.3
HPP92_014717 Vanilla planifolia HOM05D002510 ORTHO05D006928 3.7e-43 179.1 203 46.8
CARHR133780 Cardamine hirsuta HOM05D002510 ORTHO05D006928 4.9e-43 178.7 203 44.8
Lalb_Chr02g0142201 Lupinus albus HOM05D002510 ORTHO05D006928 4.9e-43 178.7 205 47.3
Actinidia06769 Actinidia chinensis HOM05D002510 ORTHO05D006928 6.3e-43 178.3 203 46.8
BcaC02g12914 Brassica carinata HOM05D002510 ORTHO05D006928 8.3e-43 177.9 205 44.9
BraA04t18437Z Brassica rapa HOM05D002510 ORTHO05D006928 8.3e-43 177.9 205 44.4
Thhalv10017009m.g Eutrema salsugineum HOM05D002510 ORTHO05D006928 8.3e-43 177.9 205 45.9
Glyma.20G179800 Glycine max HOM05D002510 ORTHO05D006928 8.3e-43 177.9 205 48.3
Haze_16887 Corylus avellana HOM05D002510 ORTHO05D006928 1.1e-42 177.6 221 43.9
QL08p055746 Quercus lobata HOM05D002510 ORTHO05D006928 1.1e-42 177.6 205 47.8
Sp4g21360 Schrenkiella parvula HOM05D002510 ORTHO05D006928 1.1e-42 177.6 205 45.9
Ah.10g032650 Amaranthus hybridus HOM05D002510 ORTHO05D006928 1.4e-42 177.2 207 46.4
Ciclev10032329m.g Citrus clementina HOM05D002510 ORTHO05D006928 1.4e-42 177.2 211 47.9
MD07G1174400 Malus domestica HOM05D002510 ORTHO05D006928 1.4e-42 177.2 205 47.8
Phvul.007G094800 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 1.4e-42 177.2 203 46.3
CiPaw.01G272400 Carya illinoinensis HOM05D002510 ORTHO05D006928 1.8e-42 176.8 203 47.3
Phvul.004G083200 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 1.8e-42 176.8 215 44.7
arahy.Tifrunner.gnm1.ann1.B5KM0B Arachis hypogaea HOM05D002510 ORTHO05D006928 3.1e-42 176.0 209 46.4
arahy.Tifrunner.gnm1.ann1.D0MVTX Arachis hypogaea HOM05D002510 ORTHO05D006928 3.1e-42 176.0 209 46.4
Os02g0806000 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D006928 3.1e-42 176.0 205 45.9
Psat6g183480 Pisum sativum HOM05D002510 ORTHO05D006928 3.1e-42 176.0 210 45.2
Nn2g10810 Nelumbo nucifera HOM05D002510 ORTHO05D006928 4.1e-42 175.6 212 47.2
PGSC0003DMG400033889 Solanum tuberosum HOM05D002510 ORTHO05D006928 5.4e-42 175.3 210 45.7
C04p67010 Brassica napus HOM05D002510 ORTHO05D006928 7.0e-42 174.9 205 44.4
BolC4t28203H Brassica oleracea HOM05D002510 ORTHO05D006928 7.0e-42 174.9 205 44.4
Oeu031347.1 Olea europaea HOM05D002510 ORTHO05D006928 7.0e-42 174.9 210 45.7
AT2G39000 Arabidopsis thaliana HOM05D002510 ORTHO05D006928 9.2e-42 174.5 205 45.4
Migut.F01984 Erythranthe guttata HOM05D002510 ORTHO05D006928 9.2e-42 174.5 202 45.0
Hund12054 Selenicereus undatus HOM05D002510 ORTHO05D006928 9.2e-42 174.5 210 45.7
arahy.Tifrunner.gnm1.ann1.DB5KD4 Arachis hypogaea HOM05D002510 ORTHO05D006928 1.2e-41 174.1 199 45.7
VMungo1197G0001 Vigna mungo HOM05D002510 ORTHO05D006928 1.2e-41 174.1 215 44.2
AL4G36300 Arabidopsis lyrata HOM05D002510 ORTHO05D006928 1.6e-41 173.7 205 44.9
TWI15G0405 Tripterygium wilfordii HOM05D002510 ORTHO05D006928 2.0e-41 173.3 201 45.3
Lj3g0006441 Lotus japonicus HOM05D002510 ORTHO05D006928 2.7e-41 172.9 200 47.0
CAN.G131.8 Capsicum annuum HOM05D002510 ORTHO05D006928 3.5e-41 172.6 210 45.2
TAR369G0428 Trochodendron aralioides HOM05D002510 ORTHO05D006928 3.5e-41 172.6 207 45.4
Carub.0004s2104 Capsella rubella HOM05D002510 ORTHO05D006928 4.5e-41 172.2 205 44.9
Manes.07G100200 Manihot esculenta HOM05D002510 ORTHO05D006928 4.5e-41 172.2 210 45.2
THA.LOC104827063 Tarenaya hassleriana HOM05D002510 ORTHO05D006928 4.5e-41 172.2 205 45.4
arahy.Tifrunner.gnm1.ann1.L5PTYD Arachis hypogaea HOM05D002510 ORTHO05D006928 5.9e-41 171.8 199 45.2
Gorai.011G239300 Gossypium raimondii HOM05D002510 ORTHO05D006928 5.9e-41 171.8 210 46.2
Atru.chr12.758 Acer truncatum HOM05D002510 ORTHO05D006928 7.7e-41 171.4 211 44.5
Potri.010G222900 Populus trichocarpa HOM05D002510 ORTHO05D006928 7.7e-41 171.4 209 44.0
Gohir.D10G213800 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.0e-40 171.0 210 46.2
Glyma.02G074000 Glycine max HOM05D002510 ORTHO05D006928 1.3e-40 170.6 208 44.7
TAR623G0044 Trochodendron aralioides HOM05D002510 ORTHO05D006928 1.3e-40 170.6 211 45.5
CDE04G1444 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 1.7e-40 170.2 211 46.0
Mapoly0033s0159 Marchantia polymorpha HOM05D002510 ORTHO05D006928 1.7e-40 170.2 219 42.9
PSO063G7611 Papaver somniferum HOM05D002510 ORTHO05D006928 3.8e-40 169.1 205 47.3
Migut.F01753 Erythranthe guttata HOM05D002510 ORTHO05D006928 6.6e-40 168.3 201 46.3
AUR62037755 Chenopodium quinoa HOM05D002510 ORTHO05D006928 8.6e-40 167.9 209 44.0
CSS0006577 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.5e-39 167.2 204 43.1
CSS0041581 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.5e-39 167.2 204 43.1
AUR62018249 Chenopodium quinoa HOM05D002510 ORTHO05D006928 1.5e-39 167.2 209 44.0
Lalb_Chr06g0162351 Lupinus albus HOM05D002510 ORTHO05D006928 1.5e-39 167.2 203 42.9
Sabra10G0172300 Salix brachista HOM05D002510 ORTHO05D006928 1.9e-39 166.8 204 44.6
A04p29730 Brassica napus HOM05D002510 ORTHO05D006928 2.5e-39 166.4 228 39.9
PSO339G5277 Papaver somniferum HOM05D002510 ORTHO05D006928 4.3e-39 165.6 203 44.8
VMungo0464G1224 Vigna mungo HOM05D002510 ORTHO05D006928 7.3e-39 164.9 214 43.5
vmacro04869 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 2.8e-38 162.9 204 43.1
Lalb_Chr03g0035921 Lupinus albus HOM05D002510 ORTHO05D006928 8.0e-38 161.4 207 41.5
Rhsim03G0120400 Rhododendron simsii HOM05D002510 ORTHO05D006928 3.0e-37 159.5 205 45.4
unitig_88.g27817 Utricularia gibba HOM05D002510 ORTHO05D006928 1.5e-36 157.1 218 42.7
Actinidia38854 Actinidia chinensis HOM05D002510 ORTHO05D006928 7.5e-36 154.8 203 42.9
ECA238G3090 Erigeron canadensis HOM05D002510 ORTHO05D006928 2.2e-35 153.3 200 44.5
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 2.2e-35 153.3 175 48.0
Lj3g0019343 Lotus japonicus HOM05D002510 ORTHO05D006928 1.1e-34 151.0 214 42.1
Cpa.g.sc53.85 Carica papaya HOM05D002510 ORTHO05D006928 3.0e-32 142.9 113 60.2
Gohir.D10G213900 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.1e-31 141.0 113 59.3
Atru.chr12.782 Acer truncatum HOM05D002510 ORTHO05D006928 1.2e-30 137.5 113 57.5
SalBow3G0053 Salvia bowleyana HOM05D002510 ORTHO05D006928 3.1e-29 132.9 162 43.8
Peaxi162Scf01719g00013 Petunia axillaris HOM05D002510 ORTHO05D006928 8.9e-29 131.3 202 39.1
Oeu014386.1 Olea europaea HOM05D002510 ORTHO05D006928 1.9e-26 123.6 113 51.3
SalBow4G2249 Salvia bowleyana HOM05D002510 ORTHO05D006928 7.8e-25 118.2 205 37.1
Gohir.A10G205500 Gossypium hirsutum HOM05D002510 ORTHO05D006928 5.6e-23 112.1 147 42.9
Dinv36437 Davidia involucrata HOM05D002510 ORTHO05D006928 7.3e-23 111.7 158 41.8
Solyc04g025230.1 Solanum lycopersicum HOM05D002510 ORTHO05D006928 4.1e-18 95.9 90 48.9
CDE06G2540 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 9.2e-18 94.7 155 40.6
AagrBONN_evm.TU.Sc2ySwM_117.96 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.2e-14 82.0 121 43.0
CAN.G790.5 Capsicum annuum HOM05D002510 ORTHO05D006928 1.8e-13 80.5 127 38.6
Glyma.16G155400 Glycine max HOM05D002510 ORTHO05D006928 2.3e-13 80.1 129 38.8
Cre16.g662650 Chlamydomonas reinhardtii HOM05D002510 ORTHO05D006928 5.8e-12 75.5 91 44.0
Actinidia32448 Actinidia chinensis HOM05D002510 ORTHO05D006928 2.9e-11 73.2 62 53.2
vmacro07070 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 2.4e-10 70.1 116 39.7
Zm00001eb172140 Zea mays HOM05D002510 ORTHO05D006928 4.1e-10 69.3 113 38.9
PRCOL_00005349 Prasinoderma coloniale HOM05D002510 ORTHO05D006928 5.4e-10 68.9 86 44.2
Aa31LG5G20680 Aethionema arabicum HOM05D002510 ORTHO05D006928 7.1e-10 68.6 116 37.1
Cre13.g581150 Chlamydomonas reinhardtii HOM05D005733 ORTHO05D006928 1.0e-08 64.7 59 59.3
Solyc04g025240.2 Solanum lycopersicum HOM05D002510 ORTHO05D006928 3.0e-08 63.2 127 31.5
Cre16.g657150 Chlamydomonas reinhardtii HOM05D006270 ORTHO05D007755 5.1e-08 62.4 74 48.6
Lj2g0015916 Lotus japonicus HOM05D002510 ORTHO05D006928 3.3e-07 59.7 117 37.6
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 2.1e-06 57.0 88 35.2
SMO200G0269 Selaginella moellendorffii HOM05D004023 ORTHO05D004681 4.7e-06 55.8 68 39.7
Sopen04g011630 Solanum pennellii HOM05D002510 ORTHO05D006928 6.2e-06 55.5 121 32.2


User provided reference genes

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