Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO122G0006 Selaginella moellendorffii HOM05D003563 ORTHO05D018110 1.2e-32 142.5 69 100.0
SMO118G0321 Selaginella moellendorffii HOM05D003563 ORTHO05D018110 9.6e-22 106.3 69 75.4
SMO286G0013 Selaginella moellendorffii HOM05D003563 ORTHO05D018110 1.6e-21 105.5 66 81.8
SMO118G0148 Selaginella moellendorffii HOM05D003563 ORTHO05D018110 2.4e-20 101.7 69 72.5
SMO119G0154 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 5.8e-19 97.1 69 69.6
AagrBONN_evm.TU.Sc2ySwM_344.3288 Anthoceros agrestis HOM05D003563 ORTHO05D005325 4.9e-18 94.0 69 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1410 Anthoceros agrestis HOM05D003563 ORTHO05D005325 8.4e-18 93.2 69 65.2
SMO340G0102 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 4.6e-16 87.4 69 60.9
PRCOL_00005031 Prasinoderma coloniale HOM05D003563 ORTHO05D005325 1.3e-15 85.9 69 62.3
CBR_g52178 Chara braunii HOM05D003563 ORTHO05D005325 6.6e-15 83.6 69 59.4
Mapoly0034s0044 Marchantia polymorpha HOM05D003563 ORTHO05D005325 1.9e-14 82.0 69 62.3
Cre03.g175400 Chlamydomonas reinhardtii HOM05D003563 ORTHO05D005325 2.5e-14 81.6 69 55.1
SMO122G0001 Selaginella moellendorffii HOM05D003563 ORTHO05D018110 2.8e-13 78.2 52 73.1
Pp3c6_18070 Physcomitrium patens HOM05D003563 ORTHO05D005325 3.6e-13 77.8 69 56.5
CBR_g3932 Chara braunii HOM05D003563 ORTHO05D005325 1.8e-12 75.5 69 55.1
Phvul.004G023500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 1.8e-12 75.5 69 52.2
PGR083G2760 Punica granatum HOM05D003563 ORTHO05D005325 1.8e-12 75.5 69 52.2
Sc02g0006230 Simmondsia chinensis HOM05D003563 ORTHO05D005325 1.8e-12 75.5 69 55.1
Pp3c5_3820 Physcomitrium patens HOM05D003563 ORTHO05D005325 2.4e-12 75.1 69 56.5
HPP92_002716 Vanilla planifolia HOM05D003563 ORTHO05D005325 2.4e-12 75.1 69 55.1
VMungo0464G1044 Vigna mungo HOM05D003563 ORTHO05D005325 2.4e-12 75.1 69 52.2
Cpa.g.sc36.68 Carica papaya HOM05D003563 ORTHO05D005325 3.1e-12 74.7 69 55.1
Glyma.19G017200 Glycine max HOM05D003563 ORTHO05D005325 3.1e-12 74.7 69 52.2
Peaxi162Scf00333g00512 Petunia axillaris HOM05D003563 ORTHO05D005325 3.1e-12 74.7 69 55.1
AagrBONN_evm.TU.Sc2ySwM_228.405 Anthoceros agrestis HOM05D003563 ORTHO05D005325 4.0e-12 74.3 65 56.9
CANSAT21G1125 Cannabis sativa HOM05D003563 ORTHO05D005325 4.0e-12 74.3 69 53.6
SMO274G0006 Selaginella moellendorffii HOM05D003563 ORTHO05D018110 4.0e-12 74.3 52 69.2
GSVIVG01009697001 Vitis vinifera HOM05D003563 ORTHO05D005325 4.0e-12 74.3 69 53.6
Ca_04241_v3 Cicer arietinum L. HOM05D003563 ORTHO05D005325 5.3e-12 73.9 69 52.2
MCO02G104 Micromonas commoda HOM05D003563 ORTHO05D005325 5.3e-12 73.9 69 52.2
PSO541G4717 Papaver somniferum HOM05D003563 ORTHO05D005325 5.3e-12 73.9 69 53.6
Prupe.1G380500 Prunus persica HOM05D003563 ORTHO05D005325 5.3e-12 73.9 69 53.6
Rhsim06G0034400 Rhododendron simsii HOM05D003563 ORTHO05D005325 6.9e-12 73.6 69 53.6
Os03g0776000 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 9.0e-12 73.2 69 52.2
Phvul.009G057500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 9.0e-12 73.2 69 53.6
vmacro21635 Vaccinium macrocarpon HOM05D003563 ORTHO05D005325 9.0e-12 73.2 69 52.2
CAN.G233.10 Capsicum annuum HOM05D003563 ORTHO05D005325 1.2e-11 72.8 69 52.2
CDE11G0237 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 1.2e-11 72.8 69 53.6
AUR62007425 Chenopodium quinoa HOM05D003563 ORTHO05D005325 1.2e-11 72.8 69 53.6
AUR62027308 Chenopodium quinoa HOM05D003563 ORTHO05D005325 1.2e-11 72.8 69 53.6
CsaV3_2G028640 Cucumis sativus L. HOM05D003563 ORTHO05D005325 1.2e-11 72.8 88 45.5
ECA232G1124 Erigeron canadensis HOM05D003563 ORTHO05D005325 1.2e-11 72.8 69 52.2
Cfa018145 Carpinus fangiana HOM05D003563 ORTHO05D005325 1.5e-11 72.4 69 52.2
Haze_07272 Corylus avellana HOM05D003563 ORTHO05D005325 1.5e-11 72.4 69 52.2
Thhalv10003173m.g Eutrema salsugineum HOM05D003563 ORTHO05D005325 1.5e-11 72.4 69 55.1
PSO675G8753 Papaver somniferum HOM05D003563 ORTHO05D005325 1.5e-11 72.4 69 52.2
Pp3c16_6380 Physcomitrium patens HOM05D003563 ORTHO05D005325 1.5e-11 72.4 69 56.5
Hund14325 Selenicereus undatus HOM05D003563 ORTHO05D005325 1.5e-11 72.4 69 53.6
Solyc12g014380.3 Solanum lycopersicum HOM05D003563 ORTHO05D005325 1.5e-11 72.4 69 50.7
TPR.G32590 Trifolium pratense HOM05D003563 ORTHO05D005325 1.5e-11 72.4 69 52.2
Zm00001eb059230 Zea mays HOM05D003563 ORTHO05D005325 1.5e-11 72.4 69 53.6
Aqoxy6G01090 Aquilegia oxysepala HOM05D003563 ORTHO05D005325 2.0e-11 72.0 69 52.2
CSS0002435 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D005325 2.0e-11 72.0 69 53.6
Cc10_g02970 Coffea canephora HOM05D003563 ORTHO05D005325 2.0e-11 72.0 69 49.3
Manes.18G027800 Manihot esculenta HOM05D003563 ORTHO05D005325 2.0e-11 72.0 69 55.1
Ah.02g117440 Amaranthus hybridus HOM05D003563 ORTHO05D005325 2.6e-11 71.6 69 52.2
Eucgr.F01561 Eucalyptus grandis HOM05D003563 ORTHO05D005325 2.6e-11 71.6 69 52.2
FAN27G1814 Fragaria x ananassa HOM05D003563 ORTHO05D005325 2.6e-11 71.6 69 52.2
Glyma.04G032600 Glycine max HOM05D003563 ORTHO05D005325 2.6e-11 71.6 69 50.7
Glyma.06G032500 Glycine max HOM05D003563 ORTHO05D005325 2.6e-11 71.6 69 50.7
HanXRQChr09g0268611 Helianthus annuus HOM05D003563 ORTHO05D005325 2.6e-11 71.6 69 50.7
Nn1g05025 Nelumbo nucifera HOM05D003563 ORTHO05D005325 2.6e-11 71.6 69 52.2
Nn5g29576 Nelumbo nucifera HOM05D003563 ORTHO05D005325 2.6e-11 71.6 69 52.2
SMO269G0051 Selaginella moellendorffii HOM05D003563 ORTHO05D018110 2.6e-11 71.6 52 69.2
unitig_37.g12990 Utricularia gibba HOM05D003563 ORTHO05D005325 2.6e-11 71.6 69 53.6
Atru.chr13.492 Acer truncatum HOM05D003563 ORTHO05D005325 3.4e-11 71.2 69 52.2
Aa31LG9G12790 Aethionema arabicum HOM05D003563 ORTHO05D005325 3.4e-11 71.2 69 53.6
MELO3C010936.2 Cucumis melo HOM05D003563 ORTHO05D005325 3.4e-11 71.2 69 52.2
RcHm_v2.0_Chr6g0300881 Rosa chinensis HOM05D003563 ORTHO05D005325 3.4e-11 71.2 69 52.2
SMO167G0083 Selaginella moellendorffii HOM05D003563 ORTHO05D018110 3.4e-11 71.2 52 67.3
CiPaw.15G077500 Carya illinoinensis HOM05D003563 ORTHO05D005325 4.5e-11 70.9 69 50.7
FvH4_2g39910 Fragaria vesca HOM05D003563 ORTHO05D005325 4.5e-11 70.9 69 52.2
Thecc.08G025500 Theobroma cacao HOM05D003563 ORTHO05D005325 4.5e-11 70.9 69 52.2
BcaC04g21978 Brassica carinata HOM05D003563 ORTHO05D005325 5.8e-11 70.5 69 53.6
A09p19900 Brassica napus HOM05D003563 ORTHO05D005325 5.8e-11 70.5 69 53.6
C09p25230 Brassica napus HOM05D003563 ORTHO05D005325 5.8e-11 70.5 69 53.6
BolC9t55419H Brassica oleracea HOM05D003563 ORTHO05D005325 5.8e-11 70.5 69 53.6
BraA09t37600Z Brassica rapa HOM05D003563 ORTHO05D005325 5.8e-11 70.5 69 53.6
Carub.0008s0621 Capsella rubella HOM05D003563 ORTHO05D005325 5.8e-11 70.5 69 53.6
CARHR213980 Cardamine hirsuta HOM05D003563 ORTHO05D005325 5.8e-11 70.5 69 53.6
Lsat_1_v5_gn_4_119160 Lactuca sativa HOM05D003563 ORTHO05D005325 5.8e-11 70.5 69 49.3
Pp3c25_1860 Physcomitrium patens HOM05D003563 ORTHO05D005325 5.8e-11 70.5 69 53.6
SHI08159 Sapria himalayana HOM05D003563 ORTHO05D005325 5.8e-11 70.5 69 50.7
Sed0018414 Sechium edule HOM05D003563 ORTHO05D005325 5.8e-11 70.5 69 50.7
Sopen12g006150 Solanum pennellii HOM05D003563 ORTHO05D005325 5.8e-11 70.5 69 49.3
THA.LOC104798643 Tarenaya hassleriana HOM05D003563 ORTHO05D005325 5.8e-11 70.5 69 53.6
TWI56G0595 Tripterygium wilfordii HOM05D003563 ORTHO05D005325 5.8e-11 70.5 69 55.1
AT5G42740 Arabidopsis thaliana HOM05D003563 ORTHO05D005325 7.6e-11 70.1 69 53.6
arahy.Tifrunner.gnm1.ann1.7JQX15 Arachis hypogaea HOM05D003563 ORTHO05D005325 7.6e-11 70.1 69 49.3
arahy.Tifrunner.gnm1.ann1.UW0ZL7 Arachis hypogaea HOM05D003563 ORTHO05D005325 7.6e-11 70.1 69 49.3
CARHR181650 Cardamine hirsuta HOM05D003563 ORTHO05D005325 7.6e-11 70.1 69 53.6
CDE05G1619 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 7.6e-11 70.1 69 52.2
Dinv39412 Davidia involucrata HOM05D003563 ORTHO05D005325 7.6e-11 70.1 69 52.2
Duzib093G1625 Durio zibethinus HOM05D003563 ORTHO05D005325 7.6e-11 70.1 69 52.2
Hma1.2p1_0105F.1_g050870 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 7.6e-11 70.1 69 52.2
Hma1.2p1_0105F.1_g050873 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 7.6e-11 70.1 69 52.2
Hma1.2p1_0105F.1_g050876 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 7.6e-11 70.1 69 52.2
Lj1g0022254 Lotus japonicus HOM05D003563 ORTHO05D005325 7.6e-11 70.1 69 49.3
Lalb_Chr23g0266621 Lupinus albus HOM05D003563 ORTHO05D005325 7.6e-11 70.1 69 50.7
MD08G1034600 Malus domestica HOM05D003563 ORTHO05D005325 7.6e-11 70.1 69 50.7
MD15G1031400 Malus domestica HOM05D003563 ORTHO05D005325 7.6e-11 70.1 69 50.7
Psat1g077120 Pisum sativum HOM05D003563 ORTHO05D005325 7.6e-11 70.1 69 50.7
Sed0015721 Sechium edule HOM05D003563 ORTHO05D005325 7.6e-11 70.1 69 52.2
SMO009G0003 Selaginella moellendorffii HOM05D003563 ORTHO05D018110 7.6e-11 70.1 52 67.3
SGA_v2.0_scaffold54G19524 Striga asiatica HOM05D003563 ORTHO05D005325 7.6e-11 70.1 69 50.7
VMungo1309G1719 Vigna mungo HOM05D003563 ORTHO05D005325 7.6e-11 70.1 69 50.7
EL10Ac5g11903 Beta vulgaris HOM05D003563 ORTHO05D005325 9.9e-11 69.7 69 52.2
BcaB07g31057 Brassica carinata HOM05D003563 ORTHO05D005325 9.9e-11 69.7 69 53.6
BcaB07g31058 Brassica carinata HOM05D003563 ORTHO05D005325 9.9e-11 69.7 69 53.6
Manes.05G160800 Manihot esculenta HOM05D003563 ORTHO05D005325 9.9e-11 69.7 69 52.2
Nitab4.5_0009269g0010 Nicotiana tabacum HOM05D003563 ORTHO05D005325 9.9e-11 69.7 69 50.7
Sp2g07360 Schrenkiella parvula HOM05D003563 ORTHO05D005325 9.9e-11 69.7 69 53.6
SEGI_25229 Sequoiadendron giganteum HOM05D003563 ORTHO05D005325 9.9e-11 69.7 69 55.1
VMungo0464G1852 Vigna mungo HOM05D003563 ORTHO05D005325 9.9e-11 69.7 69 49.3
QL02p008438 Quercus lobata HOM05D003563 ORTHO05D005325 1.3e-10 69.3 69 50.7
TAR381G1659 Trochodendron aralioides HOM05D003563 ORTHO05D005325 1.3e-10 69.3 66 51.5
Actinidia15322 Actinidia chinensis HOM05D003563 ORTHO05D005325 1.7e-10 68.9 69 49.3
Os06g0256500 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 1.7e-10 68.9 69 49.3
MSTRG.1282 Avicennia marina HOM05D003563 ORTHO05D005325 2.2e-10 68.6 69 50.7
MSTRG.25165 Avicennia marina HOM05D003563 ORTHO05D005325 2.2e-10 68.6 69 50.7
Hma1.2p1_0105F.1_g050879 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 2.2e-10 68.6 66 53.0
Oeu010500.1 Olea europaea HOM05D003563 ORTHO05D005325 2.2e-10 68.6 69 49.3
Potri.008G118900 Populus trichocarpa HOM05D003563 ORTHO05D005325 2.2e-10 68.6 69 52.2
ATR0057G040 Amborella trichopoda HOM05D003563 ORTHO05D005325 2.9e-10 68.2 69 49.3
Ciclev10000722m.g Citrus clementina HOM05D003563 ORTHO05D005325 2.9e-10 68.2 69 50.7
Gohir.A01G116000 Gossypium hirsutum HOM05D003563 ORTHO05D005325 2.9e-10 68.2 69 50.7
Gohir.D01G104300 Gossypium hirsutum HOM05D003563 ORTHO05D005325 2.9e-10 68.2 69 50.7
Gorai.002G128400 Gossypium raimondii HOM05D003563 ORTHO05D005325 2.9e-10 68.2 69 50.7
Lj7C352G3 Lonicera japonica HOM05D003563 ORTHO05D005325 2.9e-10 68.2 69 50.7
Dinv36074 Davidia involucrata HOM05D003563 ORTHO05D005325 3.8e-10 67.8 69 49.3
SalBow7G2312 Salvia bowleyana HOM05D003563 ORTHO05D005325 4.9e-10 67.4 69 50.7
Medtr6g009330 Medicago truncatula HOM05D003563 ORTHO05D005325 6.4e-10 67.0 69 49.3
DCAR_020972 Daucus carota HOM05D003563 ORTHO05D005325 8.4e-10 66.6 69 50.7
Lj4A41G56 Lonicera japonica HOM05D003563 ORTHO05D005325 1.1e-09 66.2 69 49.3
Oeu029861.1 Olea europaea HOM05D003563 ORTHO05D005325 1.1e-09 66.2 69 49.3
MBI16_g36556_MAGBIO Magnolia biondii HOM05D003563 ORTHO05D005325 1.6e-08 62.4 65 50.8
PRCOL_00005550 Prasinoderma coloniale HOM05D003563 ORTHO05D005325 3.5e-08 61.2 69 46.4
Migut.C00716 Erythranthe guttata HOM05D003563 ORTHO05D005325 6.0e-08 60.5 70 45.7
Hma1.2p1_0203F.1_g086419 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 2.3e-07 58.5 69 47.8
COL.COLO4_26329 Corchorus olitorius HOM05D003563 ORTHO05D005325 3.9e-07 57.8 62 46.8
Nitab4.5_0000194g0210 Nicotiana tabacum HOM05D003563 ORTHO05D005325 1.5e-06 55.8 55 50.9
Sabra08G0090300 Salix brachista HOM05D003563 ORTHO05D005325 1.5e-06 55.8 63 46.0


User provided reference genes

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