Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 8.7e-176 620.2 305 100.0
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 1.8e-104 383.3 302 61.6
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 1.5e-103 380.2 302 58.6
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 1.3e-102 377.1 302 58.6
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 2.2e-102 376.3 300 59.7
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 3.7e-102 375.6 302 58.6
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 8.3e-102 374.4 302 58.9
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 8.3e-102 374.4 300 61.3
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 1.1e-101 374.0 300 59.7
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 1.1e-101 374.0 300 58.3
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 1.9e-101 373.2 300 59.3
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 9.2e-101 370.9 300 58.7
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 9.2e-101 370.9 300 58.7
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.6e-100 370.2 305 58.7
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 2.0e-100 369.8 302 57.9
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 2.7e-100 369.4 302 57.9
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 4.6e-100 368.6 300 59.0
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 4.6e-100 368.6 302 58.6
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 4.6e-100 368.6 302 57.9
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 6.0e-100 368.2 304 57.2
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 1.0e-99 367.5 300 59.0
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 1.0e-99 367.5 299 59.5
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 1.0e-99 367.5 300 58.0
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 1.0e-99 367.5 302 58.3
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.3e-99 367.1 302 58.3
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.3e-99 366.3 302 58.3
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 3.0e-99 365.9 297 57.9
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 3.0e-99 365.9 300 57.7
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 3.0e-99 365.9 300 57.7
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 3.0e-99 365.9 300 58.0
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 3.9e-99 365.5 302 57.3
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 3.9e-99 365.5 305 58.0
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 3.9e-99 365.5 300 58.7
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 3.9e-99 365.5 311 57.2
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 5.0e-99 365.2 300 59.0
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 6.6e-99 364.8 300 58.0
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 6.6e-99 364.8 300 59.0
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 6.6e-99 364.8 300 58.7
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 6.6e-99 364.8 300 58.7
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 1.1e-98 364.0 309 56.6
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 1.1e-98 364.0 298 57.4
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 1.5e-98 363.6 312 57.4
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 1.5e-98 363.6 300 57.0
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 2.5e-98 362.8 300 57.3
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 2.5e-98 362.8 300 56.3
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 3.3e-98 362.5 299 57.5
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 3.3e-98 362.5 300 58.0
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 3.3e-98 362.5 300 59.0
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 7.3e-98 361.3 300 57.3
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 7.3e-98 361.3 300 58.0
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 9.5e-98 360.9 300 58.7
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 9.5e-98 360.9 295 58.6
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 1.2e-97 360.5 300 57.7
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 2.1e-97 359.8 300 58.0
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 2.8e-97 359.4 300 57.7
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 2.8e-97 359.4 300 57.7
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 6.2e-97 358.2 301 56.8
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 8.1e-97 357.8 302 57.0
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 8.1e-97 357.8 300 57.7
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 1.1e-96 357.5 300 57.3
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 1.1e-96 357.5 297 58.9
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 1.1e-96 357.5 301 57.5
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 1.1e-96 357.5 303 56.8
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 1.4e-96 357.1 302 57.0
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 2.3e-96 356.3 302 56.6
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 2.3e-96 356.3 300 55.3
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 3.1e-96 355.9 300 57.0
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 4.0e-96 355.5 289 58.8
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 5.2e-96 355.1 297 56.9
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 6.8e-96 354.8 301 55.5
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 6.8e-96 354.8 310 56.8
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 6.8e-96 354.8 300 55.3
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 8.9e-96 354.4 283 60.1
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 8.9e-96 354.4 303 56.1
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 1.2e-95 354.0 283 60.1
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 2.6e-95 352.8 291 59.1
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 2.6e-95 352.8 298 56.4
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 2.6e-95 352.8 298 56.4
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 3.4e-95 352.4 298 56.4
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 5.8e-95 351.7 296 58.4
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 5.8e-95 351.7 302 57.0
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 5.8e-95 351.7 297 56.2
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 7.5e-95 351.3 297 56.2
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 1.7e-94 350.1 330 54.2
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 2.9e-94 349.4 334 52.7
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 3.7e-94 349.0 298 55.4
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 4.9e-94 348.6 283 59.7
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 6.4e-94 348.2 298 55.7
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 6.4e-94 348.2 320 53.8
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 8.3e-94 347.8 299 57.9
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 8.3e-94 347.8 297 56.2
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 1.4e-93 347.1 305 54.8
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 1.9e-93 346.7 301 55.5
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 1.9e-93 346.7 298 56.7
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 2.4e-93 346.3 300 57.0
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 3.5e-92 342.4 298 56.0
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 6.0e-92 341.7 298 55.0
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 8.6e-91 337.8 339 49.6
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 1.5e-90 337.0 297 56.2
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 1.5e-90 337.0 352 50.0
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 2.5e-90 336.3 295 55.9
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 8.1e-89 331.3 279 57.0
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 5.8e-87 325.1 286 55.9
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 2.1e-84 316.6 345 48.4
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 4.9e-78 295.4 250 56.4
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 8.4e-78 294.7 250 56.8
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 1.4e-77 293.9 300 50.0
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 3.5e-76 289.3 251 55.8
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 7.8e-76 288.1 301 47.8
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 1.0e-75 287.7 280 51.8
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 6.6e-75 285.0 250 54.8
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.6e-73 280.4 296 49.3
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 1.5e-71 273.9 206 63.1
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 4.2e-69 265.8 258 52.3
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 4.3e-66 255.8 334 45.2
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 1.1e-61 241.1 201 59.2
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 7.9e-60 235.0 204 56.9
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 1.3e-57 227.6 254 48.0
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 2.9e-54 216.5 277 45.5
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 3.2e-53 213.0 208 50.5
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 1.8e-51 207.2 321 38.9
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 4.3e-50 202.6 191 53.4
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.6e-49 200.7 187 52.9
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 6.3e-41 172.2 150 56.7
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 1.1e-40 171.4 178 53.4
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 7.7e-39 165.2 142 57.0
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 7.2e-37 158.7 149 51.7
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 4.4e-34 149.4 302 31.5
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 4.4e-26 122.9 122 46.7
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 2.2e-25 120.6 100 57.0
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 1.2e-23 114.8 138 44.9
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 1.8e-16 90.9 91 48.4
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 2.4e-16 90.5 176 34.7
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 1.3e-14 84.7 67 58.2
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 4.7e-12 76.3 77 49.4
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 2.8e-09 67.0 85 40.0
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 3.7e-09 66.6 68 50.0
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 1.8e-08 64.3 40 70.0
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 1.6e-07 61.2 52 55.8
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 7.7e-07 58.9 56 51.8


User provided reference genes

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