Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO119G0292 Selaginella moellendorffii HOM05D001186 ORTHO05D000971 3.0e-155 552.0 316 100.0
Pp3c5_24450 Physcomitrium patens HOM05D001186 ORTHO05D000971 1.3e-17 94.7 63 74.6
Pp3c16_22640 Physcomitrium patens HOM05D001186 ORTHO05D000971 2.5e-16 90.5 74 63.5
Pp3c5_24370 Physcomitrium patens HOM05D001186 ORTHO05D000971 2.5e-16 90.5 92 57.6
Pp3c6_4170 Physcomitrium patens HOM05D001186 ORTHO05D000971 7.2e-16 89.0 66 71.2
Pp3c25_12310 Physcomitrium patens HOM05D001186 ORTHO05D000971 1.6e-15 87.8 67 68.7
CsaV3_6G030890 Cucumis sativus L. HOM05D001186 ORTHO05D000971 1.7e-09 67.8 56 64.3
Duzib041G0538 Durio zibethinus HOM05D001186 ORTHO05D000971 1.7e-09 67.8 114 43.9
Nn5g28668 Nelumbo nucifera HOM05D001186 ORTHO05D000971 2.3e-09 67.4 67 58.2
Potri.002G070600 Populus trichocarpa HOM05D001186 ORTHO05D000971 2.3e-09 67.4 70 57.1
Sabra02G0055300 Salix brachista HOM05D001186 ORTHO05D000971 3.8e-09 66.6 70 57.1
GSVIVG01001661001 Vitis vinifera HOM05D001186 ORTHO05D000971 3.8e-09 66.6 61 59.0
Potri.005G189300 Populus trichocarpa HOM05D001186 ORTHO05D000971 5.0e-09 66.2 77 54.5
TAR628G0442 Trochodendron aralioides HOM05D001186 ORTHO05D000971 5.0e-09 66.2 70 55.7
ClCG08G006550 Citrullus lanatus HOM05D001186 ORTHO05D000971 6.6e-09 65.9 94 44.7
MBI17_g11165_MAGBIO Magnolia biondii HOM05D001186 ORTHO05D000971 6.6e-09 65.9 67 55.2
TPR.G33348 Trifolium pratense HOM05D000033 ORTHO05D001999 8.6e-09 65.5 60 56.7
Thecc.08G146900 Theobroma cacao HOM05D001186 ORTHO05D000971 1.1e-08 65.1 118 41.5
CSS0038492 Camellia sinensis var. sinensis HOM05D001186 ORTHO05D000971 1.5e-08 64.7 74 54.1
Glyma.14G124800 Glycine max HOM05D001186 ORTHO05D000971 1.5e-08 64.7 87 48.3
Manes.02G176600 Manihot esculenta HOM05D001186 ORTHO05D000971 1.9e-08 64.3 65 58.5
Phvul.008G159700 Phaseolus vulgaris HOM05D001186 ORTHO05D000971 2.5e-08 63.9 76 53.9
HPP92_016162 Vanilla planifolia HOM05D001186 ORTHO05D000971 2.5e-08 63.9 66 53.0
HPP92_026215 Vanilla planifolia HOM05D001186 ORTHO05D000971 2.5e-08 63.9 66 53.0
Lalb_Chr11g0066501 Lupinus albus HOM05D001186 ORTHO05D000971 3.3e-08 63.5 70 54.3
Sed0028138 Sechium edule HOM05D001186 ORTHO05D000971 3.3e-08 63.5 56 62.5
SMO348G0011 Selaginella moellendorffii HOM05D016267 ORTHO05D000971 3.3e-08 63.5 93 48.4
TAR579G0002 Trochodendron aralioides HOM05D001186 ORTHO05D000971 3.3e-08 63.5 98 44.9
Actinidia15150 Actinidia chinensis HOM05D001186 ORTHO05D000971 4.2e-08 63.2 79 50.6
COL.COLO4_07638 Corchorus olitorius HOM05D001186 ORTHO05D000971 4.2e-08 63.2 73 52.1
Sopen04g026910 Solanum pennellii HOM05D001186 ORTHO05D000971 4.2e-08 63.2 88 47.7
TWI60G0870 Tripterygium wilfordii HOM05D001186 ORTHO05D000971 4.2e-08 63.2 76 53.9
Oeu032976.1 Olea europaea HOM05D001186 ORTHO05D000971 7.2e-08 62.4 75 52.0
VMungo1309G1275 Vigna mungo HOM05D001186 ORTHO05D000971 7.2e-08 62.4 62 54.8
COL.COLO4_36019 Corchorus olitorius HOM05D001186 ORTHO05D000971 9.5e-08 62.0 103 46.6
Dinv31630 Davidia involucrata HOM05D001186 ORTHO05D000971 9.5e-08 62.0 58 55.2
Manes.18G089366 Manihot esculenta HOM05D001186 ORTHO05D000971 9.5e-08 62.0 72 54.2
Sed0025511 Sechium edule HOM05D001186 ORTHO05D000971 9.5e-08 62.0 59 55.9
Aqoxy6G00387 Aquilegia oxysepala HOM05D001186 ORTHO05D000971 1.2e-07 61.6 115 40.9
Cfa018343 Carpinus fangiana HOM05D001186 ORTHO05D000971 1.2e-07 61.6 93 41.9
Sed0010828 Sechium edule HOM05D001186 ORTHO05D000971 1.2e-07 61.6 104 42.3
Sed0016046 Sechium edule HOM05D001186 ORTHO05D000971 1.2e-07 61.6 56 64.3
Cpa.g.sc1.29 Carica papaya HOM05D001186 ORTHO05D000971 1.6e-07 61.2 61 57.4
CiPaw.15G086400 Carya illinoinensis HOM05D001186 ORTHO05D000971 1.6e-07 61.2 75 48.0
CDE06G1589 Ceratophyllum demersum HOM05D001186 ORTHO05D000971 1.6e-07 61.2 81 49.4
Psat5g080400 Pisum sativum HOM05D001186 ORTHO05D000971 1.6e-07 61.2 112 41.1
ClCG05G022640 Citrullus lanatus HOM05D001186 ORTHO05D000971 2.1e-07 60.8 56 60.7
Glyma.06G124400 Glycine max HOM05D001186 ORTHO05D000971 2.1e-07 60.8 63 55.6
Gohir.A02G108503 Gossypium hirsutum HOM05D001186 ORTHO05D000971 2.1e-07 60.8 122 40.2
Gohir.D03G070700 Gossypium hirsutum HOM05D001186 ORTHO05D000971 2.1e-07 60.8 109 43.1
Gorai.003G089500 Gossypium raimondii HOM05D001186 ORTHO05D000971 2.1e-07 60.8 109 43.1
HanXRQChr02g0037451 Helianthus annuus HOM05D001186 ORTHO05D000971 2.1e-07 60.8 84 48.8
Nitab4.5_0000299g0270 Nicotiana tabacum HOM05D001186 ORTHO05D000971 2.1e-07 60.8 86 51.2
QL02p024757 Quercus lobata HOM05D001186 ORTHO05D000971 2.1e-07 60.8 65 50.8
SEGI_38755 Sequoiadendron giganteum HOM05D001186 ORTHO05D000971 2.1e-07 60.8 112 36.6
TAR381G0526 Trochodendron aralioides HOM05D001186 ORTHO05D000971 2.1e-07 60.8 68 54.4
DCAR_001357 Daucus carota HOM05D001186 ORTHO05D000971 2.8e-07 60.5 58 56.9
FAN23G1856 Fragaria x ananassa HOM05D001186 ORTHO05D000971 2.8e-07 60.5 74 47.3
FAN26G1531 Fragaria x ananassa HOM05D001186 ORTHO05D000971 2.8e-07 60.5 74 47.3
FAN28G0084 Fragaria x ananassa HOM05D001186 ORTHO05D000971 2.8e-07 60.5 74 47.3
Peaxi162Scf00263g00083 Petunia axillaris HOM05D001186 ORTHO05D000971 3.6e-07 60.1 88 48.9
Phvul.009G136500 Phaseolus vulgaris HOM05D001186 ORTHO05D000971 3.6e-07 60.1 87 46.0
SalBow7G3795 Salvia bowleyana HOM05D001186 ORTHO05D000971 3.6e-07 60.1 73 52.1
TAR376G0474 Trochodendron aralioides HOM05D001186 ORTHO05D000971 3.6e-07 60.1 60 55.0
ATR0697G169 Amborella trichopoda HOM05D001186 ORTHO05D000971 4.7e-07 59.7 72 52.8
FAN15G3153 Fragaria x ananassa HOM05D001186 ORTHO05D000971 4.7e-07 59.7 92 45.7
Lalb_Chr06g0166031 Lupinus albus HOM05D001186 ORTHO05D000971 4.7e-07 59.7 64 54.7
Lalb_Chr21g0308871 Lupinus albus HOM05D001186 ORTHO05D000971 4.7e-07 59.7 64 56.2
Oeu037616.1 Olea europaea HOM05D001186 ORTHO05D000971 4.7e-07 59.7 82 47.6
Potri.005G057800 Populus trichocarpa HOM05D001186 ORTHO05D000971 4.7e-07 59.7 97 43.3
CiPaw.16G016300 Carya illinoinensis HOM05D001186 ORTHO05D000971 6.1e-07 59.3 139 39.6
Dinv24322 Davidia involucrata HOM05D001186 ORTHO05D000971 6.1e-07 59.3 112 41.1
Duzib116G0881 Durio zibethinus HOM05D001186 ORTHO05D000971 6.1e-07 59.3 87 46.0
Oeu051260.1 Olea europaea HOM05D001186 ORTHO05D000971 6.1e-07 59.3 77 48.1
RcHm_v2.0_Chr6g0276681 Rosa chinensis HOM05D001186 ORTHO05D000971 6.1e-07 59.3 77 51.9
arahy.Tifrunner.gnm1.ann1.MZ5XB8 Arachis hypogaea HOM05D001186 ORTHO05D000971 8.0e-07 58.9 60 55.0
CAN.G1664.1 Capsicum annuum HOM05D001186 ORTHO05D000971 8.0e-07 58.9 97 44.3
Glyma.04G239400 Glycine max HOM05D001186 ORTHO05D000971 8.0e-07 58.9 64 51.6
Medtr1g028920 Medicago truncatula HOM05D001186 ORTHO05D000971 8.0e-07 58.9 58 53.4
Nitab4.5_0000427g0090 Nicotiana tabacum HOM05D001186 ORTHO05D000971 8.0e-07 58.9 86 50.0
Sabra05G0049800 Salix brachista HOM05D001186 ORTHO05D000971 8.0e-07 58.9 97 42.3
CDE08G0005 Ceratophyllum demersum HOM05D001186 ORTHO05D000971 1.0e-06 58.5 80 47.5
Thhalv10008673m.g Eutrema salsugineum HOM05D001186 ORTHO05D000971 1.0e-06 58.5 87 43.7
Nn1g06171 Nelumbo nucifera HOM05D001186 ORTHO05D000971 1.0e-06 58.5 102 41.2
Os08g0102900 Oryza sativa ssp. japonica HOM05D001186 ORTHO05D000971 1.0e-06 58.5 117 38.5
ATR0772G190 Amborella trichopoda HOM05D001186 ORTHO05D000971 1.4e-06 58.2 119 38.7
BcaB04g18998 Brassica carinata HOM05D001186 ORTHO05D000971 1.4e-06 58.2 68 50.0
Migut.L01057 Erythranthe guttata HOM05D001186 ORTHO05D000971 1.4e-06 58.2 70 48.6
Glyma.08G147600 Glycine max HOM05D001186 ORTHO05D000971 1.4e-06 58.2 112 37.5
Medtr1g028910 Medicago truncatula HOM05D001186 ORTHO05D000971 1.4e-06 58.2 67 49.3
Sabra05G0144600 Salix brachista HOM05D001186 ORTHO05D000971 1.4e-06 58.2 80 48.8
arahy.Tifrunner.gnm1.ann1.XR04TG Arachis hypogaea HOM05D001186 ORTHO05D000971 1.8e-06 57.8 128 37.5
Cc07_g17900 Coffea canephora HOM05D001186 ORTHO05D000971 1.8e-06 57.8 123 35.8
MD10G1018000 Malus domestica HOM05D001186 ORTHO05D000971 1.8e-06 57.8 84 48.8
Manes.12G152600 Manihot esculenta HOM05D001186 ORTHO05D000971 1.8e-06 57.8 58 51.7
Pp3c25_12370 Physcomitrium patens HOM05D001186 ORTHO05D000971 1.8e-06 57.8 54 53.7
Rhsim08G0003200 Rhododendron simsii HOM05D001186 ORTHO05D000971 1.8e-06 57.8 75 49.3
RcHm_v2.0_Chr2g0120181 Rosa chinensis HOM05D001186 ORTHO05D000971 1.8e-06 57.8 72 48.6
Zm00001eb259970 Zea mays HOM05D001186 ORTHO05D000971 1.8e-06 57.8 62 50.0
A01p35790 Brassica napus HOM05D001186 ORTHO05D000971 2.3e-06 57.4 68 48.5
MELO3C027191.2 Cucumis melo HOM05D001186 ORTHO05D000971 2.3e-06 57.4 56 55.4
Dinv11325 Davidia involucrata HOM05D001186 ORTHO05D000971 2.3e-06 57.4 79 46.8
Eucgr.F02723 Eucalyptus grandis HOM05D001186 ORTHO05D000971 2.3e-06 57.4 90 44.4
FvH4_2g14340 Fragaria vesca HOM05D001186 ORTHO05D000971 2.3e-06 57.4 77 49.4
FAN20G2326 Fragaria x ananassa HOM05D001186 ORTHO05D000971 2.3e-06 57.4 77 50.6
FAN24G3322 Fragaria x ananassa HOM05D001186 ORTHO05D000971 2.3e-06 57.4 77 49.4
FAN27G1120 Fragaria x ananassa HOM05D001186 ORTHO05D000971 2.3e-06 57.4 77 49.4
Hma1.2p1_0006F.1_g004610 Hydrangea macrophylla HOM05D001186 ORTHO05D000971 2.3e-06 57.4 141 36.9
Lj4P850T14 Lonicera japonica HOM05D001186 ORTHO05D000971 2.3e-06 57.4 92 45.7
Lj1g0004766 Lotus japonicus HOM05D001186 ORTHO05D000971 2.3e-06 57.4 93 44.1
Nitab4.5_0000633g0120 Nicotiana tabacum HOM05D001186 ORTHO05D000971 2.3e-06 57.4 65 53.8
Nitab4.5_0006679g0010 Nicotiana tabacum HOM05D001186 ORTHO05D000971 2.3e-06 57.4 65 53.8
MSTRG.2669 Avicennia marina HOM05D001186 ORTHO05D000971 3.0e-06 57.0 108 42.6
A01p35980 Brassica napus HOM05D001186 ORTHO05D000971 3.0e-06 57.0 71 47.9
Cpa.g.sc49.47 Carica papaya HOM05D001186 ORTHO05D000971 3.0e-06 57.0 77 49.4
Haze_17728 Corylus avellana HOM05D001186 ORTHO05D000971 3.0e-06 57.0 94 42.6
Duzib093G1352 Durio zibethinus HOM05D001186 ORTHO05D000971 3.0e-06 57.0 104 41.3
Duzib268G0437 Durio zibethinus HOM05D001186 ORTHO05D000971 3.0e-06 57.0 67 53.7
Medtr3g090350 Medicago truncatula HOM05D001186 ORTHO05D000971 3.0e-06 57.0 77 49.4
TPR.G18777 Trifolium pratense HOM05D001186 ORTHO05D000971 3.0e-06 57.0 79 48.1
TWI32G1022 Tripterygium wilfordii HOM05D001186 ORTHO05D000971 3.0e-06 57.0 77 49.4
TWI79G1231 Tripterygium wilfordii HOM05D001186 ORTHO05D000971 3.0e-06 57.0 60 55.0
HPP92_011922 Vanilla planifolia HOM05D001186 ORTHO05D000971 3.0e-06 57.0 69 49.3
BcaC09g48794 Brassica carinata HOM05D001186 ORTHO05D000971 4.0e-06 56.6 71 46.5
C01p45850 Brassica napus HOM05D001186 ORTHO05D000971 4.0e-06 56.6 71 46.5
BolC1t04547H Brassica oleracea HOM05D001186 ORTHO05D000971 4.0e-06 56.6 71 46.5
BraA01t03679Z Brassica rapa HOM05D001186 ORTHO05D000971 4.0e-06 56.6 71 46.5
Dinv21073 Davidia involucrata HOM05D001186 ORTHO05D000971 4.0e-06 56.6 67 50.7
MD05G1018300 Malus domestica HOM05D001186 ORTHO05D000971 4.0e-06 56.6 84 47.6
MD16G1041600 Malus domestica HOM05D001186 ORTHO05D000971 4.0e-06 56.6 71 47.9
Psat7g047880 Pisum sativum HOM05D001186 ORTHO05D000971 4.0e-06 56.6 67 46.3
Rhsim08G0133100 Rhododendron simsii HOM05D001186 ORTHO05D000971 4.0e-06 56.6 67 49.3
EL10Ac1g01490 Beta vulgaris HOM05D001186 ORTHO05D000971 5.2e-06 56.2 83 47.0
BcaC09g48824 Brassica carinata HOM05D001186 ORTHO05D000971 5.2e-06 56.2 68 48.5
C01p45550 Brassica napus HOM05D001186 ORTHO05D000971 5.2e-06 56.2 68 48.5
BolC1t04518H Brassica oleracea HOM05D001186 ORTHO05D000971 5.2e-06 56.2 68 48.5
Glyma.05G190000 Glycine max HOM05D001186 ORTHO05D000971 5.2e-06 56.2 94 42.6
Gorai.011G116000 Gossypium raimondii HOM05D001186 ORTHO05D000971 5.2e-06 56.2 65 46.2
Lsat_1_v5_gn_8_40921 Lactuca sativa HOM05D001186 ORTHO05D000971 5.2e-06 56.2 79 45.6
Lj4g0024168 Lotus japonicus HOM05D001186 ORTHO05D000971 5.2e-06 56.2 113 37.2
Prupe.8G022500 Prunus persica HOM05D001186 ORTHO05D000971 5.2e-06 56.2 83 48.2
Sc20g0003400 Simmondsia chinensis HOM05D001186 ORTHO05D000971 5.2e-06 56.2 102 42.2
BcaB05g24382 Brassica carinata HOM05D001186 ORTHO05D000971 6.8e-06 55.8 69 50.7
CiPaw.04G086200 Carya illinoinensis HOM05D001186 ORTHO05D000971 6.8e-06 55.8 80 46.2
Ciclev10002106m.g Citrus clementina HOM05D001186 ORTHO05D000971 6.8e-06 55.8 73 47.9
Thhalv10022101m.g Eutrema salsugineum HOM05D001186 ORTHO05D000971 6.8e-06 55.8 58 51.7
PGR042G2791 Punica granatum HOM05D001186 ORTHO05D000971 6.8e-06 55.8 116 41.4
HPP92_000062 Vanilla planifolia HOM05D001186 ORTHO05D000971 6.8e-06 55.8 73 50.7
BcaB07g32119 Brassica carinata HOM05D001186 ORTHO05D000971 8.9e-06 55.5 126 34.1
C02p24610 Brassica napus HOM05D001186 ORTHO05D000971 8.9e-06 55.5 69 49.3
BolC2t08559H Brassica oleracea HOM05D001186 ORTHO05D000971 8.9e-06 55.5 69 49.3
PSO675G0766 Papaver somniferum HOM05D001186 ORTHO05D000971 8.9e-06 55.5 93 46.2


User provided reference genes

Program Settings