Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 8.0e-160 567.0 280 100.0
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 8.5e-77 291.2 279 49.8
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 2.5e-76 289.7 271 51.3
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 7.2e-76 288.1 279 50.5
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 9.4e-76 287.7 279 49.5
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.2e-75 287.3 279 49.5
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 2.7e-75 286.2 280 50.0
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 2.7e-75 286.2 278 50.7
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 3.6e-75 285.8 279 49.5
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 3.6e-75 285.8 279 49.5
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 4.7e-75 285.4 270 50.7
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.0e-74 284.3 279 49.1
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 1.8e-74 283.5 271 49.4
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 3.0e-74 282.7 280 47.9
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 8.8e-74 281.2 281 48.8
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 1.1e-73 280.8 280 48.6
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 1.1e-73 280.8 280 47.9
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 2.0e-73 280.0 281 49.1
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 3.3e-73 279.3 279 48.4
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 3.3e-73 279.3 271 48.3
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 4.4e-73 278.9 280 48.6
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 4.4e-73 278.9 279 49.8
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 5.7e-73 278.5 280 47.9
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 5.7e-73 278.5 280 48.9
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 7.4e-73 278.1 281 49.1
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 9.7e-73 277.7 279 49.1
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 9.7e-73 277.7 279 47.3
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 9.7e-73 277.7 280 48.6
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 1.3e-72 277.3 280 47.5
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 2.2e-72 276.6 280 48.6
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 2.8e-72 276.2 279 48.4
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 3.7e-72 275.8 280 48.6
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 3.7e-72 275.8 279 48.7
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 4.8e-72 275.4 282 47.2
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 4.8e-72 275.4 279 47.7
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 4.8e-72 275.4 281 49.1
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 6.3e-72 275.0 280 46.8
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 6.3e-72 275.0 279 48.0
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 6.3e-72 275.0 279 49.1
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.1e-71 274.2 270 47.8
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 1.1e-71 274.2 271 48.3
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 1.1e-71 274.2 279 48.7
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 1.1e-71 274.2 281 49.8
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 1.8e-71 273.5 268 48.5
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 1.8e-71 273.5 280 47.1
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 1.8e-71 273.5 280 47.1
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.8e-71 273.5 270 47.4
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 1.8e-71 273.5 270 47.8
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 1.8e-71 273.5 278 47.1
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 2.4e-71 273.1 282 46.8
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 2.4e-71 273.1 284 48.6
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 2.4e-71 273.1 281 49.1
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 2.4e-71 273.1 281 47.0
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 3.1e-71 272.7 281 48.4
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 3.1e-71 272.7 281 47.7
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 3.1e-71 272.7 283 48.1
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 3.1e-71 272.7 281 47.7
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 4.1e-71 272.3 279 49.1
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 4.1e-71 272.3 279 47.3
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 4.1e-71 272.3 279 47.7
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 5.3e-71 271.9 279 47.0
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 7.0e-71 271.6 279 47.0
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 9.1e-71 271.2 271 48.0
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 9.1e-71 271.2 279 47.3
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 1.2e-70 270.8 272 48.5
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 1.6e-70 270.4 281 47.3
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 1.6e-70 270.4 282 47.2
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 2.0e-70 270.0 284 47.9
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 2.0e-70 270.0 279 48.0
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 2.6e-70 269.6 279 47.0
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 2.6e-70 269.6 279 47.0
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 2.6e-70 269.6 279 46.2
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 3.5e-70 269.2 279 47.0
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 4.5e-70 268.9 278 48.2
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 5.9e-70 268.5 282 45.7
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 1.0e-69 267.7 279 46.6
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 1.0e-69 267.7 279 46.2
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 2.2e-69 266.5 279 47.0
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 3.8e-69 265.8 281 47.3
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 5.0e-69 265.4 296 45.9
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 6.5e-69 265.0 292 46.2
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 6.5e-69 265.0 270 47.0
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 1.1e-68 264.2 275 46.2
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 1.1e-68 264.2 279 46.2
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 1.1e-68 264.2 257 51.0
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 5.5e-68 261.9 279 46.6
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 9.4e-68 261.2 267 48.7
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 1.0e-66 257.7 280 45.4
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 1.0e-66 257.7 264 48.5
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 6.8e-66 255.0 284 45.4
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 8.8e-66 254.6 289 45.7
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 2.6e-65 253.1 306 44.4
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 7.5e-65 251.5 252 48.4
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 4.0e-58 229.2 214 50.5
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 2.0e-57 226.9 203 50.7
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 4.4e-57 225.7 189 54.0
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.3e-56 224.2 264 44.7
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 1.3e-56 224.2 270 44.1
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 2.8e-56 223.0 233 48.1
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 8.3e-56 221.5 234 43.2
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 4.1e-55 219.2 279 41.6
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 1.2e-54 217.6 262 45.4
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.6e-54 217.2 235 46.0
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 5.9e-54 215.3 236 46.6
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 3.8e-53 212.6 235 46.0
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 8.0e-51 204.9 177 52.0
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 1.0e-50 204.5 213 49.8
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 1.4e-50 204.1 225 46.7
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 1.4e-50 204.1 164 56.1
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 2.6e-49 199.9 172 52.3
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 7.5e-49 198.4 280 39.6
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 3.1e-42 176.4 179 49.2
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 5.0e-37 159.1 280 32.5
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.5e-36 156.8 133 54.1
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 6.8e-34 148.7 115 59.1
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 8.6e-29 131.7 133 44.4
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 4.3e-28 129.4 133 44.4
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 9.5e-28 128.3 147 43.5
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 5.8e-25 119.0 83 60.2
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 8.4e-24 115.2 137 43.8
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 9.2e-23 111.7 79 62.0
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 8.1e-19 98.6 59 67.8
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 1.7e-16 90.9 62 64.5
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 9.3e-15 85.1 109 37.6
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 3.9e-13 79.7 70 58.6
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 1.5e-12 77.8 81 45.7
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 5.6e-12 75.9 72 50.0
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 2.7e-06 57.0 48 58.3
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 4.6e-06 56.2 74 37.8
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 6.0e-06 55.8 76 39.5


User provided reference genes

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