Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO119G0159 Selaginella moellendorffii HOM05D005067 ORTHO05D006105 2.2e-48 195.3 96 100.0
Mapoly0012s0093 Marchantia polymorpha HOM05D005067 ORTHO05D006105 3.9e-29 131.3 95 64.2
ATR0582G276 Amborella trichopoda HOM05D005067 ORTHO05D006105 3.3e-28 128.3 91 61.5
PGR102G0153 Punica granatum HOM05D005067 ORTHO05D006105 5.6e-28 127.5 91 61.5
Ciclev10026832m.g Citrus clementina HOM05D005067 ORTHO05D006105 2.8e-27 125.2 91 62.6
Duzib168G1737 Durio zibethinus HOM05D005067 ORTHO05D006105 2.8e-27 125.2 91 63.7
Hund07355 Selenicereus undatus HOM05D005067 ORTHO05D006105 3.6e-27 124.8 91 60.4
Pp3c20_8510 Physcomitrium patens HOM05D005067 ORTHO05D006105 8.0e-27 123.6 91 61.5
Potri.001G071900 Populus trichocarpa HOM05D005067 ORTHO05D006105 1.4e-26 122.9 91 61.5
Sabra03G0115500 Salix brachista HOM05D005067 ORTHO05D006105 2.3e-26 122.1 91 61.5
COL.COLO4_25264 Corchorus olitorius HOM05D005067 ORTHO05D006105 3.1e-26 121.7 91 59.3
vmacro05123 Vaccinium macrocarpon HOM05D005067 ORTHO05D006105 3.1e-26 121.7 91 61.5
Hma1.2p1_0738F.1_g211080 Hydrangea macrophylla HOM05D005067 ORTHO05D006105 4.0e-26 121.3 91 61.5
Potri.003G159100 Populus trichocarpa HOM05D005067 ORTHO05D006105 4.0e-26 121.3 91 60.4
arahy.Tifrunner.gnm1.ann1.35C0M2 Arachis hypogaea HOM05D005067 ORTHO05D006105 6.8e-26 120.6 91 59.3
PSO541G3634 Papaver somniferum HOM05D005067 ORTHO05D006105 6.8e-26 120.6 91 57.1
TAR723G0001 Trochodendron aralioides HOM05D005067 ORTHO05D006105 6.8e-26 120.6 91 59.3
Zm00001eb283340 Zea mays HOM05D005067 ORTHO05D006105 6.8e-26 120.6 91 57.1
Actinidia23110 Actinidia chinensis HOM05D005067 ORTHO05D006105 8.9e-26 120.2 91 59.3
Gohir.D13G224500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 8.9e-26 120.2 91 60.4
Prupe.4G224700 Prunus persica HOM05D005067 ORTHO05D006105 8.9e-26 120.2 91 59.3
arahy.Tifrunner.gnm1.ann1.S7KJ0A Arachis hypogaea HOM05D005067 ORTHO05D006105 1.2e-25 119.8 91 59.3
arahy.Tifrunner.gnm1.ann1.V7S8AY Arachis hypogaea HOM05D005067 ORTHO05D006105 1.2e-25 119.8 91 59.3
CiPaw.06G112100 Carya illinoinensis HOM05D005067 ORTHO05D006105 1.2e-25 119.8 91 60.4
CDE02G2760 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 1.2e-25 119.8 90 61.1
Lj3g0015814 Lotus japonicus HOM05D005067 ORTHO05D006105 1.2e-25 119.8 91 59.3
PSO675G6660 Papaver somniferum HOM05D005067 ORTHO05D006105 1.2e-25 119.8 91 57.1
RcHm_v2.0_Chr5g0041661 Rosa chinensis HOM05D005067 ORTHO05D006105 1.2e-25 119.8 91 60.4
THA.LOC104807181 Tarenaya hassleriana HOM05D005067 ORTHO05D006105 1.2e-25 119.8 91 61.5
AUR62013622 Chenopodium quinoa HOM05D005067 ORTHO05D006105 1.5e-25 119.4 91 57.1
Gorai.006G119400 Gossypium raimondii HOM05D005067 ORTHO05D006105 1.5e-25 119.4 91 59.3
Sp2g18390 Schrenkiella parvula HOM05D005067 ORTHO05D006105 1.5e-25 119.4 91 60.4
arahy.Tifrunner.gnm1.ann1.75T26B Arachis hypogaea HOM05D005067 ORTHO05D006105 2.0e-25 119.0 91 58.2
arahy.Tifrunner.gnm1.ann1.MX8VGA Arachis hypogaea HOM05D005067 ORTHO05D006105 2.0e-25 119.0 91 58.2
BcaC04g23800 Brassica carinata HOM05D005067 ORTHO05D006105 2.0e-25 119.0 91 59.3
A06p39480 Brassica napus HOM05D005067 ORTHO05D006105 2.0e-25 119.0 91 59.3
C07p38790 Brassica napus HOM05D005067 ORTHO05D006105 2.0e-25 119.0 91 59.3
BolC7t44398H Brassica oleracea HOM05D005067 ORTHO05D006105 2.0e-25 119.0 91 59.3
BolC9t53383H Brassica oleracea HOM05D005067 ORTHO05D006105 2.0e-25 119.0 91 59.3
BraA06t26863Z Brassica rapa HOM05D005067 ORTHO05D006105 2.0e-25 119.0 91 59.3
MELO3C026758.2 Cucumis melo HOM05D005067 ORTHO05D006105 2.0e-25 119.0 91 59.3
Lalb_Chr12g0209921 Lupinus albus HOM05D005067 ORTHO05D006105 2.0e-25 119.0 91 57.1
HPP92_001280 Vanilla planifolia HOM05D005067 ORTHO05D006105 2.0e-25 119.0 90 58.9
AT5G47890 Arabidopsis thaliana HOM05D005067 ORTHO05D006105 2.6e-25 118.6 91 60.4
Dinv26521 Davidia involucrata HOM05D005067 ORTHO05D006105 2.6e-25 118.6 91 61.5
Gorai.013G255300 Gossypium raimondii HOM05D005067 ORTHO05D006105 2.6e-25 118.6 91 60.4
Zm00001eb345800 Zea mays HOM05D005067 ORTHO05D006105 3.4e-25 118.2 89 57.3
BcaC03g17619 Brassica carinata HOM05D005067 ORTHO05D006105 4.4e-25 117.9 91 59.3
AUR62004226 Chenopodium quinoa HOM05D005067 ORTHO05D006105 4.4e-25 117.9 91 56.0
Sed0016956 Sechium edule HOM05D005067 ORTHO05D006105 4.4e-25 117.9 91 59.3
GSVIVG01001135001 Vitis vinifera HOM05D005067 ORTHO05D006105 4.4e-25 117.9 91 57.1
AagrBONN_evm.TU.Sc2ySwM_117.283 Anthoceros agrestis HOM05D005067 ORTHO05D006105 5.8e-25 117.5 87 62.1
arahy.Tifrunner.gnm1.ann1.WU9C10 Arachis hypogaea HOM05D005067 ORTHO05D006105 5.8e-25 117.5 91 58.2
C09p04540 Brassica napus HOM05D005067 ORTHO05D006105 5.8e-25 117.5 91 58.2
FAN16G3498 Fragaria x ananassa HOM05D005067 ORTHO05D006105 5.8e-25 117.5 91 58.2
Gohir.A13G220500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 5.8e-25 117.5 91 59.3
Psat1g160400 Pisum sativum HOM05D005067 ORTHO05D006105 5.8e-25 117.5 91 56.0
Sed0000673 Sechium edule HOM05D005067 ORTHO05D006105 5.8e-25 117.5 91 59.3
TPR.G17128 Trifolium pratense HOM05D005067 ORTHO05D006105 5.8e-25 117.5 93 55.9
TWI18G1269 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 5.8e-25 117.5 91 59.3
AL8G19880 Arabidopsis lyrata HOM05D005067 ORTHO05D006105 7.5e-25 117.1 91 60.4
Carub.0014s0003 Capsella rubella HOM05D005067 ORTHO05D006105 7.5e-25 117.1 91 60.4
CDE02G0654 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 7.5e-25 117.1 90 60.0
Thhalv10005189m.g Eutrema salsugineum HOM05D005067 ORTHO05D006105 7.5e-25 117.1 91 60.4
Medtr2g034290 Medicago truncatula HOM05D005067 ORTHO05D006105 7.5e-25 117.1 91 56.0
TPR.G27257 Trifolium pratense HOM05D005067 ORTHO05D006105 7.5e-25 117.1 91 56.0
Oeu003268.1 Olea europaea HOM05D005067 ORTHO05D006105 9.8e-25 116.7 91 57.1
FAN21G3427 Fragaria x ananassa HOM05D002614 ORTHO05D002794 1.3e-24 116.3 91 58.2
FAN25G2289 Fragaria x ananassa HOM05D005067 ORTHO05D006105 1.3e-24 116.3 91 58.2
Aa31LG3G14180 Aethionema arabicum HOM05D005067 ORTHO05D006105 1.7e-24 115.9 91 56.0
Aqoxy5G02883 Aquilegia oxysepala HOM05D005067 ORTHO05D006105 1.7e-24 115.9 91 57.1
arahy.Tifrunner.gnm1.ann1.48UY8P Arachis hypogaea HOM05D005067 ORTHO05D006105 1.7e-24 115.9 91 57.1
BcaB07g30049 Brassica carinata HOM05D005067 ORTHO05D006105 1.7e-24 115.9 91 57.1
HanXRQChr05g0134241 Helianthus annuus HOM05D005067 ORTHO05D006105 1.7e-24 115.9 91 56.0
Lsat_1_v5_gn_1_32740 Lactuca sativa HOM05D005067 ORTHO05D006105 1.7e-24 115.9 91 54.9
MD03G1192500 Malus domestica HOM05D005067 ORTHO05D006105 1.7e-24 115.9 91 56.0
A02p37170 Brassica napus HOM05D005067 ORTHO05D006105 2.2e-24 115.5 91 58.2
BraA02t08703Z Brassica rapa HOM05D005067 ORTHO05D006105 2.2e-24 115.5 91 58.2
Ca_01855_v3 Cicer arietinum L. HOM05D005067 ORTHO05D006105 2.2e-24 115.5 91 56.0
FvH4_3g23621 Fragaria vesca HOM05D005067 ORTHO05D006105 2.2e-24 115.5 91 58.2
FAN11G0656 Fragaria x ananassa HOM05D001534 ORTHO05D003503 2.2e-24 115.5 91 58.2
Glyma.04G179100 Glycine max HOM05D005067 ORTHO05D006105 2.2e-24 115.5 91 57.1
Manes.08G098600 Manihot esculenta HOM05D005067 ORTHO05D006105 2.2e-24 115.5 91 58.2
Thecc.09G262100 Theobroma cacao HOM05D005067 ORTHO05D006105 2.2e-24 115.5 91 58.2
CARHR184460 Cardamine hirsuta HOM05D005067 ORTHO05D006105 2.9e-24 115.2 91 59.3
Cfa012979 Carpinus fangiana HOM05D005067 ORTHO05D006105 3.7e-24 114.8 91 57.1
Medtr8g012945 Medicago truncatula HOM05D005067 ORTHO05D006105 3.7e-24 114.8 91 54.9
Phvul.009G181800 Phaseolus vulgaris HOM05D005067 ORTHO05D006105 3.7e-24 114.8 91 57.1
C02p56190 Brassica napus HOM05D005067 ORTHO05D006105 4.9e-24 114.4 91 56.0
CSS0001472 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 4.9e-24 114.4 91 56.0
CANSAT01G3113 Cannabis sativa HOM05D005067 ORTHO05D006105 4.9e-24 114.4 91 54.9
CSS0007870 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 6.4e-24 114.0 91 56.0
MD11G1209000 Malus domestica HOM05D005067 ORTHO05D006105 6.4e-24 114.0 90 56.7
Atru.chr12.1484 Acer truncatum HOM05D005067 ORTHO05D006105 8.3e-24 113.6 90 60.0
CiPaw.05G096900 Carya illinoinensis HOM05D005067 ORTHO05D006105 8.3e-24 113.6 91 58.2
Duzib150G1019 Durio zibethinus HOM05D005067 ORTHO05D006105 8.3e-24 113.6 91 57.1
Haze_21343 Corylus avellana HOM05D005067 ORTHO05D006105 1.1e-23 113.2 91 56.0
Haze_21349 Corylus avellana HOM05D005067 ORTHO05D006105 1.1e-23 113.2 91 56.0
Gohir.D09G102100 Gossypium hirsutum HOM05D005067 ORTHO05D006105 1.1e-23 113.2 91 57.1
arahy.Tifrunner.gnm1.ann1.4NI9N6 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.4e-23 112.8 91 56.0
Glyma.06G185600 Glycine max HOM05D005067 ORTHO05D006105 1.4e-23 112.8 91 56.0
TWI36G0882 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 1.4e-23 112.8 93 59.1
BcaB04g19540 Brassica carinata HOM05D005067 ORTHO05D006105 1.9e-23 112.5 90 56.7
HanXRQChr08g0228171 Helianthus annuus HOM05D005067 ORTHO05D006105 2.4e-23 112.1 91 53.8
MBI11_g22246_MAGBIO Magnolia biondii HOM05D005067 ORTHO05D006105 2.4e-23 112.1 83 61.4
EL10Ac1g00908 Beta vulgaris HOM05D005067 ORTHO05D006105 3.2e-23 111.7 96 53.1
Hund21907 Selenicereus undatus HOM05D005067 ORTHO05D006105 3.2e-23 111.7 105 49.5
arahy.Tifrunner.gnm1.ann1.XUTR46 Arachis hypogaea HOM05D005067 ORTHO05D006105 5.4e-23 110.9 91 57.1
Migut.D02119 Erythranthe guttata HOM05D005067 ORTHO05D006105 9.2e-23 110.2 91 57.1
Eucgr.B03411 Eucalyptus grandis HOM05D005067 ORTHO05D006105 9.2e-23 110.2 101 50.5
ECA238G3917 Erigeron canadensis HOM05D005067 ORTHO05D006105 1.6e-22 109.4 86 55.8
Nitab4.5_0009655g0030 Nicotiana tabacum HOM05D005067 ORTHO05D006105 2.7e-22 108.6 91 57.1
Sabra01G0050500 Salix brachista HOM05D005067 ORTHO05D006105 2.7e-22 108.6 112 50.0
Nitab4.5_0002882g0010 Nicotiana tabacum HOM05D005067 ORTHO05D006105 1.0e-21 106.7 91 56.0
MSTRG.18590 Avicennia marina HOM05D005067 ORTHO05D006105 1.3e-21 106.3 91 53.8
Peaxi162Scf00679g00133 Petunia axillaris HOM05D005067 ORTHO05D006105 1.3e-21 106.3 91 54.9
Solyc06g075810.3 Solanum lycopersicum HOM05D005067 ORTHO05D006105 1.7e-21 105.9 91 57.1
Sopen06g032240 Solanum pennellii HOM05D005067 ORTHO05D006105 1.7e-21 105.9 91 57.1
PGSC0003DMG400015529 Solanum tuberosum HOM05D005067 ORTHO05D006105 1.7e-21 105.9 91 56.0
PGSC0003DMG400030398 Solanum tuberosum HOM05D005067 ORTHO05D006105 1.7e-21 105.9 91 57.1
Nitab4.5_0001953g0110 Nicotiana tabacum HOM05D005067 ORTHO05D006105 3.0e-21 105.1 91 54.9
Gohir.A09G105300 Gossypium hirsutum HOM05D005067 ORTHO05D006105 6.6e-21 104.0 71 62.0
unitig_736.g22438 Utricularia gibba HOM05D005067 ORTHO05D006105 8.6e-21 103.6 91 53.8
Cc01_g12390 Coffea canephora HOM05D005067 ORTHO05D006105 1.5e-20 102.8 91 50.5
Actinidia14133 Actinidia chinensis HOM05D005067 ORTHO05D006105 2.1e-19 99.0 67 62.7
SEGI_29862 Sequoiadendron giganteum HOM05D005067 ORTHO05D006105 4.7e-19 97.8 64 65.6
QL03p047951 Quercus lobata HOM05D005067 ORTHO05D006105 1.4e-18 96.3 64 65.6
ClCG10G013160 Citrullus lanatus HOM05D005067 ORTHO05D006105 2.3e-18 95.5 64 62.5
Psat0s3432g0200 Pisum sativum HOM05D005067 ORTHO05D006105 2.3e-18 95.5 78 53.8
Lalb_Chr07g0194241 Lupinus albus HOM05D005067 ORTHO05D006105 6.8e-18 94.0 64 60.9
arahy.Tifrunner.gnm1.ann1.P4C6EV Arachis hypogaea HOM05D005067 ORTHO05D006105 8.9e-18 93.6 64 62.5
Glyma.06G272300 Glycine max HOM05D005067 ORTHO05D006105 8.9e-18 93.6 72 58.3
Cre16.g679500 Chlamydomonas reinhardtii HOM05D005067 ORTHO05D006105 2.0e-17 92.4 90 44.4
Sc03g0003970 Simmondsia chinensis HOM05D005067 ORTHO05D006105 7.6e-17 90.5 64 60.9
Os04g0310500 Oryza sativa ssp. japonica HOM05D005067 ORTHO05D006105 9.9e-17 90.1 64 54.7
SalBow3G2136 Salvia bowleyana HOM05D005067 ORTHO05D006105 2.2e-16 89.0 91 50.5
PRCOL_00006750 Prasinoderma coloniale HOM05D005067 ORTHO05D006105 2.9e-16 88.6 90 43.3
DCAR_005307 Daucus carota HOM05D005067 ORTHO05D006105 8.3e-16 87.0 62 59.7
Pp3c23_15790 Physcomitrium patens HOM05D005067 ORTHO05D006105 8.3e-16 87.0 62 62.9
arahy.Tifrunner.gnm1.ann1.AQUA2C Arachis hypogaea HOM05D005067 ORTHO05D006105 1.9e-15 85.9 63 60.3
arahy.Tifrunner.gnm1.ann1.8NA9N0 Arachis hypogaea HOM05D005067 ORTHO05D006105 4.1e-15 84.7 63 58.7
BolC2t11675H Brassica oleracea HOM05D005067 ORTHO05D006105 5.4e-15 84.3 63 60.3
TAR718G0005 Trochodendron aralioides HOM05D005067 ORTHO05D006105 5.4e-15 84.3 63 57.1
Glyma.02G198800 Glycine max HOM05D005067 ORTHO05D006105 1.6e-14 82.8 64 57.8
MCO03G395 Micromonas commoda HOM05D005067 ORTHO05D006105 6.6e-13 77.4 83 38.6
SHI02599 Sapria himalayana HOM05D005067 ORTHO05D006105 5.6e-12 74.3 63 50.8
unitig_899.g14896 Utricularia gibba HOM05D005067 ORTHO05D006105 7.3e-12 73.9 59 57.6


User provided reference genes

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