Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 3.9e-128 461.5 229 100.0
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 3.9e-128 461.5 229 100.0
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 4.6e-105 384.8 226 80.5
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 4.3e-103 378.3 229 77.7
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 7.4e-103 377.5 229 77.7
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 1.3e-102 376.7 229 78.2
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 2.1e-102 375.9 229 77.3
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 2.8e-102 375.6 229 77.3
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 3.7e-102 375.2 226 77.4
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 3.7e-102 375.2 226 77.4
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 3.7e-102 375.2 229 76.9
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 6.2e-102 374.4 229 76.0
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 6.2e-102 374.4 229 76.0
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 8.2e-102 374.0 229 76.4
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 1.1e-101 373.6 229 76.0
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 1.1e-101 373.6 229 76.9
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 1.4e-101 373.2 229 76.0
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.4e-101 373.2 226 77.0
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 1.4e-101 373.2 229 76.0
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 1.8e-101 372.9 229 75.5
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 1.8e-101 372.9 229 75.5
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 4.0e-101 371.7 229 76.0
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 5.3e-101 371.3 226 76.5
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 5.3e-101 371.3 226 75.2
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 6.9e-101 370.9 229 76.4
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 9.0e-101 370.5 229 75.5
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 1.2e-100 370.2 229 76.0
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 1.2e-100 370.2 229 76.0
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 1.5e-100 369.8 229 75.1
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 2.0e-100 369.4 229 76.0
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 2.0e-100 369.4 229 76.0
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 2.6e-100 369.0 229 75.5
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 3.4e-100 368.6 229 74.7
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 3.4e-100 368.6 229 74.7
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 4.5e-100 368.2 229 74.7
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 5.8e-100 367.9 226 74.8
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 5.8e-100 367.9 226 74.8
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 7.6e-100 367.5 229 74.2
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.0e-99 367.1 229 74.7
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 1.0e-99 367.1 228 74.6
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.7e-99 366.3 229 73.8
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 2.2e-99 365.9 229 73.8
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 2.9e-99 365.5 229 75.5
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 3.8e-99 365.2 229 73.8
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 3.8e-99 365.2 229 74.2
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 3.8e-99 365.2 226 74.8
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 3.8e-99 365.2 226 74.3
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 4.9e-99 364.8 229 73.4
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 4.9e-99 364.8 229 73.8
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 6.5e-99 364.4 229 74.7
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 6.5e-99 364.4 228 73.7
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 6.5e-99 364.4 228 75.0
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 8.4e-99 364.0 226 74.3
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 1.4e-98 363.2 229 75.1
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 1.4e-98 363.2 229 75.5
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 1.9e-98 362.8 229 73.4
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 3.2e-98 362.1 229 74.2
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 5.5e-98 361.3 226 74.3
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 5.5e-98 361.3 229 73.8
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 7.1e-98 360.9 229 73.4
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 7.1e-98 360.9 211 82.9
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 1.2e-97 360.1 229 72.5
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 1.6e-97 359.8 226 73.9
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 2.1e-97 359.4 226 73.9
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 2.1e-97 359.4 229 73.8
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 2.1e-97 359.4 220 76.8
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 3.5e-97 358.6 226 73.5
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 6.0e-97 357.8 226 72.6
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 1.0e-96 357.1 226 72.1
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.8e-96 356.3 229 73.4
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 3.9e-96 355.1 225 74.2
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 3.9e-96 355.1 226 73.9
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 3.9e-96 355.1 229 71.2
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 5.1e-96 354.8 229 72.5
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 8.7e-96 354.0 226 72.6
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 8.7e-96 354.0 229 72.9
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 7.4e-95 350.9 226 73.5
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 7.4e-95 350.9 226 73.5
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 7.4e-95 350.9 226 73.5
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 7.4e-95 350.9 226 73.5
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 7.4e-95 350.9 226 71.2
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 9.7e-95 350.5 226 73.5
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 1.6e-94 349.7 226 72.1
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 1.6e-94 349.7 226 72.6
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 2.2e-94 349.4 226 73.0
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 2.8e-94 349.0 226 72.6
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 2.8e-94 349.0 226 72.1
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 3.7e-94 348.6 226 72.6
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 4.8e-94 348.2 226 72.6
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 4.8e-94 348.2 226 72.6
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 6.3e-94 347.8 226 70.8
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 8.2e-94 347.4 226 72.6
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 8.2e-94 347.4 229 72.1
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 1.4e-93 346.7 226 72.1
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 2.4e-93 345.9 229 71.6
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 3.1e-93 345.5 235 71.1
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 5.3e-93 344.7 226 72.1
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 5.3e-93 344.7 229 72.5
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 5.3e-93 344.7 228 70.6
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 1.2e-92 343.6 228 70.2
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 1.5e-92 343.2 225 72.0
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 8.5e-91 337.4 229 72.1
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 1.9e-90 336.3 253 65.6
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 1.6e-89 333.2 226 69.0
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 1.0e-88 330.5 192 81.8
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 2.2e-86 322.8 198 76.3
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 2.8e-86 322.4 207 74.4
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 4.8e-86 321.6 203 74.9
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 6.3e-86 321.2 204 73.0
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 6.3e-86 321.2 229 65.5
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 2.4e-85 319.3 190 80.0
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 4.1e-85 318.5 190 77.9
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 5.3e-85 318.2 190 78.9
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 5.3e-85 318.2 201 73.1
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 1.6e-81 306.6 187 76.5
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 4.7e-81 305.1 185 78.4
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.4e-80 303.5 189 74.1
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 2.3e-80 302.8 233 64.8
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 6.7e-80 301.2 226 65.0
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 2.6e-79 299.3 234 63.2
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 5.0e-75 285.0 180 72.8
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 3.2e-74 282.3 226 61.1
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 1.8e-69 266.5 226 58.0
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 7.0e-69 264.6 164 75.6
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 4.5e-68 261.9 161 74.5
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.5e-63 246.9 158 72.2
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 8.3e-62 241.1 354 39.5
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 5.0e-59 231.9 154 73.4
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.2e-55 220.7 158 62.0
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.1e-45 187.6 119 70.6
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 7.0e-45 184.9 131 63.4
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.9e-26 123.6 135 47.4
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.9e-22 109.8 69 75.4
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 2.7e-20 103.2 62 69.4
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 4.7e-17 92.4 154 38.3
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 1.7e-14 84.0 125 44.0
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 7.1e-13 78.6 45 73.3
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 3.5e-12 76.3 41 73.2
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 2.3e-11 73.6 85 43.5
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 3.0e-11 73.2 63 52.4
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 6.4e-06 55.5 47 57.4
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 8.4e-06 55.1 26 88.5


User provided reference genes

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