Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 1.5e-136 489.6 259 100.0
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 1.7e-111 406.4 247 83.4
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.1e-110 403.7 252 82.9
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 5.4e-110 401.4 245 83.7
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 1.3e-108 396.7 249 80.7
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.7e-108 396.4 247 81.8
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 2.3e-108 396.0 247 82.2
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 2.3e-108 396.0 247 82.2
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 2.3e-108 396.0 251 82.1
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 3.0e-108 395.6 247 80.2
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 3.9e-108 395.2 250 80.0
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 3.9e-108 395.2 250 80.4
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 5.1e-108 394.8 249 80.3
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 6.6e-108 394.4 251 79.3
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 6.6e-108 394.4 251 79.7
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 8.6e-108 394.0 256 77.3
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 8.6e-108 394.0 247 79.8
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 1.9e-107 392.9 251 79.3
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 2.5e-107 392.5 247 80.2
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 2.5e-107 392.5 250 79.2
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 2.5e-107 392.5 250 79.2
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 2.5e-107 392.5 251 79.3
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 3.3e-107 392.1 250 79.2
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 4.3e-107 391.7 250 79.2
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 4.3e-107 391.7 249 79.1
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 4.3e-107 391.7 246 80.5
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 4.3e-107 391.7 251 79.7
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 5.6e-107 391.3 251 79.7
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 7.3e-107 391.0 245 80.4
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 7.3e-107 391.0 252 79.0
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 7.3e-107 391.0 250 78.8
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 7.3e-107 391.0 250 78.8
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 9.5e-107 390.6 249 79.5
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 9.5e-107 390.6 249 79.5
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 9.5e-107 390.6 251 78.9
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 9.5e-107 390.6 251 78.9
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 9.5e-107 390.6 252 78.6
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 1.2e-106 390.2 249 79.5
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 1.6e-106 389.8 249 80.3
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 2.1e-106 389.4 250 78.4
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 2.1e-106 389.4 250 78.4
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 2.1e-106 389.4 250 79.2
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 2.1e-106 389.4 246 79.7
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 2.8e-106 389.0 252 78.2
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 2.8e-106 389.0 249 79.1
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 3.6e-106 388.7 250 78.0
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 3.6e-106 388.7 251 78.1
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 3.6e-106 388.7 242 81.0
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 4.7e-106 388.3 246 80.1
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 4.7e-106 388.3 251 78.9
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 4.7e-106 388.3 251 78.9
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 6.2e-106 387.9 250 78.8
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 8.1e-106 387.5 250 78.8
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 8.1e-106 387.5 254 78.7
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 8.1e-106 387.5 250 79.2
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 1.1e-105 387.1 249 77.5
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 1.1e-105 387.1 244 79.1
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 1.1e-105 387.1 251 77.3
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 1.4e-105 386.7 249 79.5
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.4e-105 386.7 250 78.4
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 1.4e-105 386.7 242 80.6
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 1.4e-105 386.7 250 77.6
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 1.4e-105 386.7 246 78.9
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 1.8e-105 386.3 250 78.4
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.8e-105 386.3 250 78.4
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.8e-105 386.3 250 78.4
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.8e-105 386.3 250 78.4
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 1.8e-105 386.3 249 77.5
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 1.8e-105 386.3 251 78.5
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 2.3e-105 386.0 252 79.0
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 2.3e-105 386.0 252 79.0
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 2.3e-105 386.0 247 78.1
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 2.3e-105 386.0 250 77.2
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 2.3e-105 386.0 244 79.5
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 2.3e-105 386.0 249 78.7
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 2.3e-105 386.0 249 79.1
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 3.1e-105 385.6 250 77.6
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 3.1e-105 385.6 250 77.6
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 3.1e-105 385.6 250 77.6
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 4.0e-105 385.2 241 81.7
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 6.8e-105 384.4 250 76.8
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 6.8e-105 384.4 240 82.5
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 6.8e-105 384.4 245 78.8
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 8.9e-105 384.0 247 77.7
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 8.9e-105 384.0 252 77.0
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 1.2e-104 383.6 246 80.1
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 1.2e-104 383.6 250 76.8
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 1.2e-104 383.6 250 76.8
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 1.2e-104 383.6 246 79.3
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 2.0e-104 382.9 250 76.0
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 2.0e-104 382.9 242 79.3
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 2.6e-104 382.5 246 78.9
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 3.4e-104 382.1 249 77.9
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 4.4e-104 381.7 250 77.6
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 4.4e-104 381.7 246 78.9
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 5.8e-104 381.3 241 80.5
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 5.8e-104 381.3 248 77.8
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 5.8e-104 381.3 251 77.7
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 5.8e-104 381.3 244 79.1
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 7.5e-104 380.9 240 80.4
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 7.5e-104 380.9 251 77.3
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 9.9e-104 380.6 249 77.1
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 9.9e-104 380.6 251 77.3
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 1.3e-103 380.2 246 79.3
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 1.3e-103 380.2 250 77.6
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 1.3e-103 380.2 246 76.8
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 1.7e-103 379.8 235 81.7
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 1.7e-103 379.8 251 77.3
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 1.7e-103 379.8 252 76.6
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 1.7e-103 379.8 249 77.5
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 2.2e-103 379.4 251 77.3
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 2.9e-103 379.0 245 76.7
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 4.9e-103 378.3 251 76.5
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 4.9e-103 378.3 246 77.2
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 4.9e-103 378.3 246 77.2
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 4.9e-103 378.3 246 77.2
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 6.4e-103 377.9 252 77.0
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 8.3e-103 377.5 246 77.2
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 1.4e-102 376.7 250 75.2
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 2.7e-101 372.5 241 77.2
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 1.3e-100 370.2 250 75.2
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 3.3e-99 365.5 249 74.7
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 7.3e-99 364.4 247 74.9
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 2.8e-98 362.5 247 75.3
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 1.4e-97 360.1 222 80.6
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 4.0e-97 358.6 247 74.5
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 1.5e-96 356.7 250 73.2
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 2.6e-96 355.9 290 65.2
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 9.9e-96 354.0 322 60.9
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 3.8e-95 352.1 253 67.6
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 1.1e-94 350.5 337 58.2
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.4e-94 350.1 252 71.8
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 4.6e-93 345.1 250 73.6
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 6.0e-93 344.7 252 69.4
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 7.8e-93 344.4 243 72.4
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 1.7e-92 343.2 248 69.0
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 7.1e-86 321.2 255 63.9
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 2.1e-85 319.7 205 75.6
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 3.4e-80 302.4 251 64.5
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 2.5e-75 286.2 187 77.0
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 3.5e-61 239.2 246 56.5
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 5.3e-57 225.3 146 77.4
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 9.4e-54 214.5 154 72.1
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 4.6e-53 212.2 154 71.4
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 3.2e-46 189.5 126 73.0
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 3.2e-46 189.5 126 73.0
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 3.7e-42 176.0 104 87.5
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.8e-36 157.1 102 80.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 3.0e-36 156.4 99 81.8
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.4e-28 131.0 89 71.9
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 2.6e-27 126.7 120 56.7
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 1.0e-20 104.8 97 57.7
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 1.2e-19 101.3 64 79.7
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 2.0e-19 100.5 61 82.0


User provided reference genes

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