Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.6e-143 511.5 250 100.0
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.0e-97 359.0 236 74.2
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.3e-88 328.6 230 70.9
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.9e-49 199.1 149 61.1
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.3e-36 157.5 244 36.5
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.2e-34 151.0 234 36.8
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.0e-32 143.7 227 36.1
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 9.7e-32 141.4 232 37.1
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 1.3e-31 141.0 242 37.6
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 2.2e-31 140.2 185 36.8
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 6.3e-31 138.7 239 35.1
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 1.8e-30 137.1 233 37.3
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 2.4e-30 136.7 230 37.0
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 9.1e-30 134.8 237 34.2
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 9.1e-30 134.8 220 36.4
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 1.2e-29 134.4 224 33.9
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.2e-29 134.4 220 35.9
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 1.6e-29 134.0 232 36.2
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 1.6e-29 134.0 232 36.2
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 2.0e-29 133.7 222 34.2
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 2.0e-29 133.7 229 33.2
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 2.0e-29 133.7 232 36.2
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 2.0e-29 133.7 222 34.7
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 2.6e-29 133.3 236 34.7
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 2.6e-29 133.3 233 36.1
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 3.5e-29 132.9 234 34.6
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 3.5e-29 132.9 232 33.2
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 3.5e-29 132.9 232 35.3
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 3.5e-29 132.9 221 34.8
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 4.5e-29 132.5 246 33.7
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 4.5e-29 132.5 229 33.2
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 4.5e-29 132.5 220 35.0
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 7.7e-29 131.7 243 35.4
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 1.3e-28 131.0 226 33.6
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.3e-28 131.0 226 33.6
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.3e-28 131.0 230 33.0
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.3e-28 131.0 230 33.0
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.7e-28 130.6 230 32.6
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 1.7e-28 130.6 236 35.2
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 1.7e-28 130.6 232 34.9
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 2.2e-28 130.2 194 36.1
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 2.2e-28 130.2 239 35.6
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 2.9e-28 129.8 231 35.1
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 3.8e-28 129.4 252 32.5
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.8e-28 129.4 233 34.8
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 5.0e-28 129.0 233 34.3
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 5.0e-28 129.0 236 34.3
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 6.5e-28 128.6 230 33.0
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 8.5e-28 128.3 233 33.0
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 8.5e-28 128.3 236 35.2
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 8.5e-28 128.3 156 41.0
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 1.1e-27 127.9 194 37.6
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 1.1e-27 127.9 219 34.7
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 1.5e-27 127.5 218 34.4
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 1.9e-27 127.1 219 34.7
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.9e-27 127.1 244 35.2
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.5e-27 126.7 244 34.8
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 3.2e-27 126.3 232 33.6
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 3.2e-27 126.3 240 36.2
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 4.2e-27 125.9 232 32.3
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 4.2e-27 125.9 244 34.8
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 5.5e-27 125.6 232 32.3
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 5.5e-27 125.6 231 34.6
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 5.5e-27 125.6 243 32.9
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 7.2e-27 125.2 232 32.3
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 7.2e-27 125.2 234 34.6
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 7.2e-27 125.2 216 31.9
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 9.4e-27 124.8 216 33.8
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 1.2e-26 124.4 236 33.9
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 1.6e-26 124.0 229 32.8
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 1.6e-26 124.0 246 32.1
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 1.6e-26 124.0 194 35.6
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 2.1e-26 123.6 220 33.6
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 2.7e-26 123.2 229 32.8
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 2.7e-26 123.2 238 33.2
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 2.7e-26 123.2 217 35.5
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 2.7e-26 123.2 217 35.0
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 3.6e-26 122.9 251 31.5
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 4.7e-26 122.5 228 34.2
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 4.7e-26 122.5 234 32.9
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.7e-26 122.5 246 34.1
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 4.7e-26 122.5 220 32.3
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 4.7e-26 122.5 242 33.5
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 4.7e-26 122.5 218 33.5
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 6.1e-26 122.1 185 35.7
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 1.0e-25 121.3 217 33.6
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 1.0e-25 121.3 216 33.8
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.0e-25 121.3 244 32.0
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.0e-25 121.3 244 32.0
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.0e-25 121.3 228 34.2
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 1.8e-25 120.6 228 33.8
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.8e-25 120.6 249 32.5
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.8e-25 120.6 236 31.8
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 1.8e-25 120.6 228 33.8
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.3e-25 120.2 220 31.8
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 2.3e-25 120.2 220 31.8
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 3.0e-25 119.8 220 33.2
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 4.0e-25 119.4 237 31.6
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 4.0e-25 119.4 234 33.8
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 6.7e-25 118.6 221 33.9
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 8.8e-25 118.2 234 31.6
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 1.2e-24 117.9 209 35.9
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 1.2e-24 117.9 232 33.2
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 1.5e-24 117.5 241 32.4
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 2.6e-24 116.7 237 31.6
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 3.3e-24 116.3 220 31.8
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 5.7e-24 115.5 236 32.2
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 5.7e-24 115.5 218 32.6
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 5.7e-24 115.5 232 31.9
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 9.7e-24 114.8 241 32.4
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 9.7e-24 114.8 219 33.8
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 2.2e-23 113.6 211 36.0
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 2.8e-23 113.2 234 29.9
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 6.3e-23 112.1 235 31.9
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 8.2e-23 111.7 253 31.2
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 1.4e-22 110.9 216 34.3
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.8e-22 110.5 185 31.9
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 1.8e-22 110.5 218 31.7
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 7.0e-22 108.6 213 32.9
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 2.0e-21 107.1 212 32.1
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 3.5e-21 106.3 213 33.3
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 4.5e-21 105.9 223 31.4
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 5.9e-21 105.5 208 32.2
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 5.9e-21 105.5 237 30.0
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 7.7e-21 105.1 157 36.3
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 1.7e-20 104.0 225 32.4
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 1.7e-20 104.0 279 26.9
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 5.0e-20 102.4 260 26.9
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 1.5e-19 100.9 203 32.0
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 4.0e-17 92.8 155 33.5
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 2.0e-16 90.5 203 31.0
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 2.0e-16 90.5 188 31.4
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 4.4e-16 89.4 146 33.6
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 8.3e-15 85.1 222 26.1
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 1.4e-14 84.3 104 38.5
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 5.4e-14 82.4 128 33.6
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 4.5e-13 79.3 106 35.8
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 5.0e-12 75.9 217 27.2
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 5.5e-11 72.4 221 26.7
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 3.6e-10 69.7 90 37.8
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 3.6e-10 69.7 95 34.7
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 1.4e-09 67.8 239 27.6
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.8e-09 67.4 173 30.1
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 4.0e-09 66.2 221 25.3
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 5.2e-09 65.9 167 30.5
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 2.0e-08 63.9 59 47.5
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 4.4e-08 62.8 70 41.4
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 5.7e-08 62.4 70 41.4
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 5.7e-08 62.4 70 41.4
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 1.1e-06 58.2 119 31.9
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.1e-06 58.2 125 31.2


User provided reference genes

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