Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 8.7e-224 780.0 402 100.0
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 4.4e-127 458.8 396 60.9
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 2.3e-123 446.4 388 56.2
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 6.6e-123 444.9 408 56.1
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 3.3e-122 442.6 413 55.2
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 1.4e-120 437.2 397 55.7
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 3.1e-120 436.0 409 55.3
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 3.1e-120 436.0 407 54.1
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 4.0e-120 435.6 397 55.4
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 5.2e-120 435.3 397 55.4
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 6.8e-120 434.9 401 54.9
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 8.9e-120 434.5 404 55.2
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 1.2e-119 434.1 424 53.3
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 1.2e-119 434.1 397 55.2
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 1.2e-119 434.1 418 54.5
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 1.2e-119 434.1 409 54.3
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 2.0e-119 433.3 409 55.3
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 2.6e-119 433.0 408 54.9
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 4.4e-119 432.2 408 54.7
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 7.6e-119 431.4 409 54.8
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 9.9e-119 431.0 420 52.1
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.3e-118 430.6 408 54.4
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.3e-118 430.6 408 54.4
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 1.3e-118 430.6 408 55.1
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.7e-118 430.3 412 54.6
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 1.7e-118 430.3 407 54.1
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 2.9e-118 429.5 412 53.9
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 4.9e-118 428.7 407 53.8
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 8.4e-118 427.9 413 54.2
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 8.4e-118 427.9 407 54.8
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 1.1e-117 427.6 419 53.7
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 1.1e-117 427.6 409 54.3
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 1.9e-117 426.8 398 54.8
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 1.9e-117 426.8 400 54.5
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 2.4e-117 426.4 409 54.3
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 3.2e-117 426.0 408 53.9
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 3.2e-117 426.0 404 54.2
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 3.2e-117 426.0 407 54.3
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 4.1e-117 425.6 415 53.5
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 4.1e-117 425.6 409 54.3
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 5.4e-117 425.2 407 53.8
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 9.2e-117 424.5 402 54.2
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 1.2e-116 424.1 416 54.8
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 1.6e-116 423.7 410 54.6
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 1.6e-116 423.7 409 54.8
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.1e-116 423.3 409 54.3
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.1e-116 423.3 409 54.3
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 2.1e-116 423.3 408 53.4
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 2.7e-116 422.9 409 53.5
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 2.7e-116 422.9 401 54.4
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 2.7e-116 422.9 408 53.7
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.7e-116 422.9 409 54.8
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 3.5e-116 422.5 403 55.8
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 3.5e-116 422.5 451 50.8
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 3.5e-116 422.5 407 53.6
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 4.6e-116 422.2 404 54.7
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 6.0e-116 421.8 408 53.4
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.0e-115 421.0 409 54.0
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 1.3e-115 420.6 409 54.3
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.3e-115 420.6 406 53.2
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 1.7e-115 420.2 416 51.9
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 2.3e-115 419.9 403 54.3
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 3.0e-115 419.5 406 53.0
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 5.1e-115 418.7 409 52.1
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 6.6e-115 418.3 409 53.3
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 6.6e-115 418.3 408 53.2
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 6.6e-115 418.3 409 53.8
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 6.6e-115 418.3 406 53.0
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 8.6e-115 417.9 408 53.2
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 1.5e-114 417.2 401 53.4
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 3.3e-114 416.0 409 53.8
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 7.3e-114 414.8 408 52.9
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 1.2e-113 414.1 381 56.7
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 2.1e-113 413.3 408 52.9
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 8.9e-112 407.9 428 51.2
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 1.5e-111 407.1 408 52.9
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 2.0e-111 406.8 409 51.6
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 9.9e-111 404.4 447 48.5
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 1.4e-109 400.6 439 49.0
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 4.2e-109 399.1 396 53.0
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 7.8e-108 394.8 474 46.8
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 4.3e-106 389.0 369 54.7
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 1.1e-104 384.4 379 52.5
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.5e-103 380.6 372 53.8
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 1.3e-102 377.5 405 50.4
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 3.8e-102 375.9 410 49.8
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 4.9e-102 375.6 409 50.6
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 1.4e-101 374.0 417 50.1
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 2.7e-100 369.8 385 50.9
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 3.0e-99 366.3 383 50.9
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 3.9e-99 365.9 363 54.0
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 5.1e-99 365.5 425 46.8
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 5.1e-99 365.5 408 49.3
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 1.1e-98 364.4 395 50.1
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 5.8e-95 352.1 565 37.7
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 4.9e-94 349.0 387 49.9
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 2.5e-90 336.7 387 48.1
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 8.1e-89 331.6 326 54.9
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 1.4e-88 330.9 336 52.4
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 3.1e-88 329.7 393 46.8
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 5.8e-87 325.5 404 46.0
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 1.3e-86 324.3 324 54.0
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 2.9e-86 323.2 331 53.5
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 3.8e-86 322.8 322 54.3
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 2.7e-84 316.6 349 48.1
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 1.6e-81 307.4 331 52.0
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 5.3e-80 302.4 408 43.6
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 2.2e-78 297.0 304 52.3
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 7.2e-77 292.0 316 50.6
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.3e-73 281.2 301 51.5
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 4.5e-71 272.7 464 39.0
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 5.9e-71 272.3 383 40.2
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 8.2e-65 251.9 254 52.0
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.3e-62 244.6 263 51.3
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 5.5e-61 239.2 265 49.4
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 2.6e-58 230.3 393 38.9
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 2.4e-56 223.8 346 41.0
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 3.5e-55 219.9 262 47.3
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 4.5e-55 219.5 386 35.0
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 3.8e-54 216.5 379 34.8
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 1.9e-53 214.2 175 59.4
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 1.9e-53 214.2 207 53.1
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.9e-53 214.2 363 37.5
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 1.9e-53 214.2 383 37.1
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 1.9e-53 214.2 366 36.3
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 4.7e-52 209.5 236 48.7
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 2.6e-50 203.8 412 34.7
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 1.7e-49 201.1 218 51.8
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 1.5e-45 188.0 316 38.3
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 2.5e-45 187.2 210 50.5
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 3.2e-45 186.8 148 58.8
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 4.2e-45 186.4 143 60.8
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 3.6e-44 183.3 142 60.6
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 3.4e-42 176.8 141 58.9
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 5.4e-40 169.5 174 51.1
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 2.7e-39 167.2 329 33.1
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 1.0e-35 155.2 390 31.8
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 4.0e-35 153.3 127 57.5
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 2.7e-31 140.6 181 46.4
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 6.6e-30 136.0 103 62.1
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 3.3e-29 133.7 185 43.2
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 6.8e-27 125.9 243 39.1
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 7.5e-26 122.5 111 52.3
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 8.6e-22 109.0 85 60.0
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 8.6e-22 109.0 84 61.9
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 8.6e-22 109.0 84 61.9
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 3.7e-17 93.6 123 44.7
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 7.8e-15 85.9 62 62.9
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 8.3e-09 65.9 45 60.0
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 9.2e-08 62.4 45 55.6
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 1.6e-07 61.6 111 37.8
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 1.6e-07 61.6 45 55.6
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 1.3e-06 58.5 109 29.4
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 3.9e-06 57.0 45 57.8


User provided reference genes

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