Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 0.0e+00 1741.1 1033 100.0
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 1.2e-88 332.4 528 47.0
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 7.0e-84 316.6 603 44.4
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 2.6e-83 314.7 632 42.9
SMO194G0045 Selaginella moellendorffii HOM05D021996 ORTHO05D012444 2.8e-77 294.7 436 43.6
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 8.3e-77 293.1 576 38.4
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 8.3e-77 293.1 554 43.3
SMO194G0038 Selaginella moellendorffii HOM05D021996 ORTHO05D006636 5.9e-75 287.0 431 45.0
SMO358G0018 Selaginella moellendorffii HOM05D021996 ORTHO05D006636 6.5e-74 283.5 432 43.3
SMO358G0029 Selaginella moellendorffii HOM05D021996 ORTHO05D006636 6.5e-74 283.5 444 43.5
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 1.2e-67 262.7 625 46.9
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 3.5e-67 261.2 621 34.5
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 3.3e-65 254.6 567 38.4
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 1.6e-64 252.3 557 38.6
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 8.9e-63 246.5 567 45.3
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.2e-59 236.1 551 37.2
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 1.6e-59 235.7 626 35.3
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 2.9e-58 231.5 637 32.7
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 5.0e-58 230.7 587 34.6
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 5.6e-57 227.3 569 38.7
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 2.3e-55 221.9 585 32.1
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 3.4e-54 218.0 613 33.6
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 4.4e-54 217.6 580 37.4
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 1.3e-53 216.1 572 35.3
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 1.7e-53 215.7 566 36.2
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 2.2e-53 215.3 592 30.9
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 2.9e-53 214.9 607 32.3
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 3.7e-53 214.5 617 33.7
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 8.3e-53 213.4 587 32.5
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 1.1e-52 213.0 608 35.2
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 1.1e-52 213.0 572 36.9
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 1.4e-52 212.6 667 34.2
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 2.4e-52 211.8 698 34.2
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 3.2e-52 211.5 579 36.1
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 7.0e-52 210.3 562 34.9
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 7.0e-52 210.3 619 34.1
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 1.6e-51 209.1 612 34.2
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 2.7e-51 208.4 590 36.4
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 2.7e-51 208.4 554 35.6
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 1.0e-50 206.5 648 32.7
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 1.3e-50 206.1 666 33.0
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 1.3e-50 206.1 613 32.0
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 4.3e-49 201.1 612 33.0
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 4.3e-49 201.1 570 38.6
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 9.5e-49 199.9 564 37.8
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 9.5e-49 199.9 577 31.7
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 1.2e-48 199.5 492 34.8
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 1.6e-48 199.1 532 36.5
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 1.6e-48 199.1 605 31.6
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 1.1e-47 196.4 546 38.3
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 1.4e-47 196.1 619 32.1
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 3.1e-47 194.9 568 37.9
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 5.2e-47 194.1 613 34.3
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 5.2e-47 194.1 576 31.6
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 6.8e-47 193.7 568 35.0
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 1.2e-46 193.0 585 36.6
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 1.2e-46 193.0 619 34.2
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 1.5e-46 192.6 689 34.4
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 2.6e-46 191.8 432 41.9
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 2.6e-46 191.8 592 30.1
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 1.3e-45 189.5 559 34.5
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 1.3e-45 189.5 553 32.2
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 2.9e-45 188.3 665 34.4
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 2.9e-45 188.3 634 34.5
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 2.4e-44 185.3 618 34.1
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 2.4e-44 185.3 566 30.9
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 3.2e-44 184.9 604 30.5
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 3.2e-44 184.9 592 38.0
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 1.2e-43 183.0 626 30.2
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 1.6e-43 182.6 615 31.9
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 2.1e-43 182.2 593 33.2
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 2.1e-43 182.2 419 37.9
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.7e-43 181.8 540 39.4
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 4.6e-43 181.0 621 37.8
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 4.6e-43 181.0 533 35.6
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 6.0e-43 180.6 427 35.1
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 2.3e-42 178.7 525 37.0
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 5.1e-42 177.6 652 35.4
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 1.1e-41 176.4 559 34.5
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 1.9e-41 175.6 369 42.0
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 1.6e-40 172.6 577 32.6
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 2.1e-40 172.2 577 33.3
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 4.7e-40 171.0 568 41.2
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.3e-39 168.7 657 36.1
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 4.0e-39 167.9 706 29.5
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.5e-38 166.0 573 31.9
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 2.6e-38 165.2 623 32.3
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 3.4e-38 164.9 564 31.6
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 3.4e-38 164.9 655 30.7
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 7.6e-38 163.7 660 29.5
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 7.6e-38 163.7 661 38.1
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 1.7e-37 162.5 615 29.6
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 4.9e-37 161.0 532 34.0
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 4.9e-37 161.0 580 31.2
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 4.9e-37 161.0 562 34.9
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 1.9e-36 159.1 627 29.3
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 3.2e-36 158.3 616 33.8
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 5.4e-36 157.5 573 30.2
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 9.2e-36 156.8 654 34.1
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 1.2e-35 156.4 662 32.8
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 1.0e-34 153.3 611 33.1
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 1.7e-34 152.5 531 34.3
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 5.1e-34 151.0 570 31.4
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 7.3e-33 147.1 575 30.4
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.2e-32 146.4 555 36.4
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 3.6e-32 144.8 613 30.7
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 6.2e-32 144.1 355 38.9
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 1.2e-30 139.8 524 35.1
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 5.8e-30 137.5 529 36.1
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 9.9e-30 136.7 532 35.9
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.3e-29 136.3 493 33.5
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 1.3e-29 136.3 561 34.6
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 3.8e-29 134.8 485 35.7
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 4.9e-29 134.4 533 35.3
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 1.9e-28 132.5 529 35.2
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 4.2e-28 131.3 541 30.9
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 6.0e-27 127.5 418 31.8
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 6.6e-26 124.0 317 35.6
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 5.6e-25 120.9 565 31.3
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 2.4e-23 115.5 362 40.9
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.7e-18 99.4 177 37.9
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.9e-17 95.9 193 35.8
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 1.3e-16 93.2 535 34.2
Cfa025790 Carpinus fangiana HOM05D005724 ORTHO05D006636 2.0e-14 85.9 599 28.9
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 1.3e-13 83.2 155 34.2
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 1.7e-13 82.8 228 38.2
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 3.8e-13 81.6 215 30.7
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 3.2e-12 78.6 96 46.9
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 2.1e-11 75.9 166 36.7
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 3.5e-11 75.1 61 57.4
SMO302G0048 Selaginella moellendorffii HOM05D001433 ORTHO05D005019 1.8e-10 72.8 161 27.3
SMO353G0197 Selaginella moellendorffii HOM05D022978 ORTHO05D377872 1.8e-10 72.8 161 27.3
SMO353G0251 Selaginella moellendorffii HOM05D022978 ORTHO05D376042 1.8e-10 72.8 163 28.8
SMO270G0042 Selaginella moellendorffii HOM05D035776 ORTHO05D376188 5.1e-10 71.2 152 30.3
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 2.5e-09 68.9 119 37.0
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 2.5e-09 68.9 119 37.8
SMO117G0340 Selaginella moellendorffii HOM05D022978 ORTHO05D373768 5.6e-09 67.8 199 24.6
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 7.4e-09 67.4 118 43.2
SMO367G0129 Selaginella moellendorffii HOM05D022978 ORTHO05D379328 1.3e-08 66.6 199 24.1
SMO358G0220 Selaginella moellendorffii HOM05D064669 ORTHO05D378237 2.8e-08 65.5 58 60.3
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 4.8e-08 64.7 173 37.6
SMO367G0285 Selaginella moellendorffii HOM05D022978 ORTHO05D374205 2.4e-07 62.4 158 26.6
SMO194G0033 Selaginella moellendorffii HOM05D021996 ORTHO05D012444 9.0e-07 60.5 75 46.7


User provided reference genes

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