Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 1.3e-171 606.3 302 100.0
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 2.4e-109 399.4 293 66.6
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 8.5e-107 391.0 285 64.9
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 1.6e-100 370.2 294 63.6
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 1.9e-98 363.2 297 62.0
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 6.1e-97 358.2 289 61.6
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 2.3e-96 356.3 289 61.2
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 3.0e-96 355.9 289 60.6
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 8.8e-96 354.4 289 61.2
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 8.8e-96 354.4 290 61.0
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 2.0e-95 353.2 289 61.2
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 2.6e-95 352.8 289 60.2
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 2.6e-95 352.8 289 60.6
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 2.6e-95 352.8 289 60.6
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 3.4e-95 352.4 295 60.0
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 5.7e-95 351.7 289 62.3
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 5.7e-95 351.7 289 61.9
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 5.7e-95 351.7 287 59.9
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 9.8e-95 350.9 289 60.6
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 9.8e-95 350.9 289 60.6
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 9.8e-95 350.9 289 60.6
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 1.7e-94 350.1 296 60.8
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 1.7e-94 350.1 296 60.8
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.8e-94 349.4 289 60.2
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 2.8e-94 349.4 289 60.6
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 2.8e-94 349.4 289 60.6
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 2.8e-94 349.4 289 60.9
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 3.7e-94 349.0 290 59.0
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 4.8e-94 348.6 289 59.9
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 8.3e-94 347.8 285 59.6
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 8.3e-94 347.8 295 60.0
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 1.1e-93 347.4 292 58.9
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 1.1e-93 347.4 289 59.9
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 1.4e-93 347.1 289 58.8
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 1.4e-93 347.1 286 59.8
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 1.4e-93 347.1 289 61.2
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 1.4e-93 347.1 289 59.2
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 2.4e-93 346.3 289 59.5
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 2.4e-93 346.3 289 58.8
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 3.1e-93 345.9 289 58.8
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 3.1e-93 345.9 295 59.7
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.1e-93 345.5 285 60.7
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 4.1e-93 345.5 291 60.1
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 4.1e-93 345.5 289 59.2
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 4.1e-93 345.5 291 58.4
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 5.4e-93 345.1 289 59.5
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 5.4e-93 345.1 289 60.2
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 7.0e-93 344.7 286 59.4
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 7.0e-93 344.7 289 59.2
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 9.1e-93 344.4 289 59.2
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 1.2e-92 344.0 279 60.6
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 1.2e-92 344.0 294 58.8
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 2.0e-92 343.2 285 60.4
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 2.0e-92 343.2 289 58.8
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 2.7e-92 342.8 289 58.8
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 2.7e-92 342.8 289 59.2
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 3.5e-92 342.4 291 58.4
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 4.5e-92 342.0 289 58.8
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 4.5e-92 342.0 289 58.8
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 4.5e-92 342.0 289 58.5
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 5.9e-92 341.7 289 60.2
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 5.9e-92 341.7 289 60.2
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 7.7e-92 341.3 289 58.5
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 1.0e-91 340.9 289 58.5
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 1.3e-91 340.5 301 57.1
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.3e-91 340.5 285 59.3
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 3.8e-91 339.0 286 57.7
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 5.0e-91 338.6 296 58.8
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 5.0e-91 338.6 289 58.1
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 5.0e-91 338.6 303 57.4
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 5.0e-91 338.6 295 59.7
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 6.5e-91 338.2 285 60.0
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 6.5e-91 338.2 286 58.7
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 1.1e-90 337.4 294 58.5
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 1.1e-90 337.4 296 59.1
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 1.9e-90 336.7 294 58.8
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 2.5e-90 336.3 279 60.2
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 3.2e-90 335.9 289 57.8
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 3.2e-90 335.9 298 58.7
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 7.2e-90 334.7 299 56.9
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 9.4e-90 334.3 289 58.8
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 9.4e-90 334.3 290 58.6
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 1.2e-89 334.0 289 57.8
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 2.1e-89 333.2 305 57.0
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 1.4e-88 330.5 291 56.7
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 3.0e-88 329.3 290 57.2
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 4.0e-88 328.9 289 58.1
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 6.8e-88 328.2 292 56.8
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 2.0e-87 326.6 290 57.6
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 3.4e-87 325.9 289 56.4
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 9.8e-87 324.3 289 58.5
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.6e-84 317.0 245 62.9
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 3.5e-84 315.8 366 47.8
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 5.0e-83 312.0 265 60.0
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 2.1e-81 306.6 259 57.5
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 6.8e-80 301.6 266 56.0
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 6.8e-80 301.6 266 56.0
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 3.2e-77 292.7 289 52.6
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 4.0e-72 275.8 288 48.3
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 4.0e-72 275.8 285 48.4
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.0e-72 275.8 286 46.9
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 4.0e-72 275.8 289 52.2
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 5.2e-72 275.4 288 48.6
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 1.5e-71 273.9 285 48.4
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.5e-71 273.9 285 48.4
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 5.8e-71 271.9 286 46.5
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.3e-70 270.8 286 48.6
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 1.3e-70 270.8 285 47.7
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.7e-70 270.4 281 49.5
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.9e-70 268.9 284 48.2
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 1.4e-69 267.3 288 48.6
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 1.9e-69 266.9 286 47.6
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 2.4e-69 266.5 289 46.4
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.4e-69 266.5 285 47.7
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.2e-69 266.2 281 47.7
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 5.4e-69 265.4 281 48.0
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 5.4e-69 265.4 284 47.5
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 7.0e-69 265.0 289 46.4
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 9.2e-69 264.6 286 46.5
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 1.2e-68 264.2 289 46.4
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 1.2e-68 264.2 289 46.4
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 1.2e-68 264.2 289 46.0
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.6e-68 263.8 286 46.5
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.6e-68 263.8 287 47.7
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 2.7e-68 263.1 289 46.0
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 4.6e-68 262.3 289 47.8
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.3e-67 260.8 292 44.9
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 8.6e-67 258.1 272 48.9
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.1e-66 257.7 285 46.3
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.5e-66 257.3 287 46.7
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 2.5e-66 256.5 289 46.7
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 3.3e-66 256.1 292 44.2
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 4.3e-66 255.8 289 48.4
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 7.3e-66 255.0 289 48.1
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 2.1e-65 253.4 214 57.5
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 1.1e-64 251.1 288 45.1
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 1.4e-64 250.8 283 47.0
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.4e-64 250.8 211 56.9
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 1.8e-64 250.4 289 44.6
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 4.0e-64 249.2 211 56.9
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.2e-63 247.7 211 56.9
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 1.0e-59 234.6 287 47.0
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 6.6e-59 231.9 273 47.3
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 2.1e-57 226.9 266 47.7
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 8.1e-57 224.9 266 42.1
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 8.1e-57 224.9 356 38.2
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 2.0e-55 220.3 251 46.2
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 9.9e-55 218.0 283 44.9
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 3.3e-50 203.0 291 43.0
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 3.6e-49 199.5 268 42.5
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.2e-47 194.5 219 47.9
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 8.1e-41 171.8 188 45.7
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 8.1e-41 171.8 188 45.7
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 3.1e-40 169.9 157 51.0
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 1.3e-33 147.9 180 46.1
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 3.6e-33 146.4 128 55.5
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 2.6e-31 140.2 128 53.9
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 2.6e-31 140.2 128 53.9
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 3.2e-29 133.3 131 50.4
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 3.9e-27 126.3 152 42.1
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 4.0e-24 116.3 111 51.4
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 1.2e-23 114.8 498 26.3
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 8.4e-22 108.6 78 71.8
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.2e-21 106.7 285 27.7
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 8.7e-19 98.6 94 55.3
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 2.1e-17 94.0 143 38.5
MCO13G005 Micromonas commoda HOM05D004218 ORTHO05D004938 6.1e-12 75.9 190 31.1
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 2.5e-10 70.5 54 63.0


User provided reference genes

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