Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 7.5e-104 380.6 197 100.0
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.6e-101 372.9 197 99.0
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.5e-101 371.7 197 98.5
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 7.8e-101 370.5 197 98.5
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.7e-85 318.9 197 86.3
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 1.5e-67 260.0 197 59.9
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 2.5e-67 259.2 197 61.9
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 1.3e-63 246.9 195 61.0
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.4e-62 241.5 197 71.1
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 1.2e-61 240.4 197 57.9
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 1.6e-61 240.0 197 56.9
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.0e-61 238.0 186 72.0
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 1.7e-60 236.5 197 54.8
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 2.3e-60 236.1 197 55.8
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 3.9e-60 235.3 197 55.8
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 3.9e-60 235.3 197 54.8
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 6.6e-60 234.6 197 55.3
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 1.9e-59 233.0 197 54.8
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 3.3e-59 232.3 197 54.3
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 3.3e-59 232.3 197 54.3
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 3.3e-59 232.3 197 54.3
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 4.3e-59 231.9 197 54.3
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 4.3e-59 231.9 197 54.3
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 9.6e-59 230.7 197 54.3
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 9.6e-59 230.7 197 54.3
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 9.6e-59 230.7 197 54.3
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 9.6e-59 230.7 197 52.8
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 1.3e-58 230.3 197 54.3
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 2.1e-58 229.6 197 54.3
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 2.8e-58 229.2 197 54.3
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 3.6e-58 228.8 197 54.3
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 3.6e-58 228.8 197 53.8
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 4.8e-58 228.4 197 53.3
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 4.8e-58 228.4 197 52.3
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 4.8e-58 228.4 197 53.3
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 6.2e-58 228.0 197 52.3
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 6.2e-58 228.0 197 53.8
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 8.1e-58 227.6 197 53.8
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.1e-57 227.3 197 54.8
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 1.4e-57 226.9 197 53.8
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 1.4e-57 226.9 197 53.3
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 1.4e-57 226.9 197 51.8
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 1.8e-57 226.5 197 53.8
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 2.4e-57 226.1 197 53.3
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 2.4e-57 226.1 197 54.3
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 2.4e-57 226.1 197 53.3
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 2.4e-57 226.1 197 54.3
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 2.4e-57 226.1 197 51.8
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 4.0e-57 225.3 197 53.3
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 5.3e-57 224.9 197 51.8
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 5.3e-57 224.9 197 53.8
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 6.9e-57 224.6 197 51.8
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 6.9e-57 224.6 197 53.8
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 9.0e-57 224.2 197 53.3
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 1.2e-56 223.8 197 51.3
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 1.2e-56 223.8 197 52.8
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 1.5e-56 223.4 197 53.3
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 2.0e-56 223.0 197 53.3
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 2.0e-56 223.0 197 50.8
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 2.0e-56 223.0 197 52.8
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 2.6e-56 222.6 197 52.8
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 2.6e-56 222.6 197 50.8
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 2.6e-56 222.6 197 52.3
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 2.6e-56 222.6 197 53.3
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 3.4e-56 222.2 197 50.8
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 3.4e-56 222.2 198 52.5
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 4.5e-56 221.9 197 53.3
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 5.8e-56 221.5 197 52.3
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 9.9e-56 220.7 197 54.8
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 1.3e-55 220.3 197 53.8
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.2e-55 219.5 203 51.2
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 2.2e-55 219.5 197 50.8
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 2.2e-55 219.5 197 50.8
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 2.9e-55 219.2 198 53.0
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 3.8e-55 218.8 197 51.8
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 3.8e-55 218.8 197 51.3
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 4.9e-55 218.4 197 50.8
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 6.4e-55 218.0 193 53.4
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 6.4e-55 218.0 198 52.5
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 6.4e-55 218.0 197 51.8
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 8.4e-55 217.6 197 49.2
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 8.4e-55 217.6 198 52.5
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 1.1e-54 217.2 197 52.8
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 1.1e-54 217.2 197 51.3
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.4e-54 216.9 197 52.3
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 1.4e-54 216.9 197 49.2
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 2.4e-54 216.1 207 50.7
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.4e-54 216.1 198 52.5
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 4.2e-54 215.3 197 51.3
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 4.2e-54 215.3 197 51.3
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 4.2e-54 215.3 207 50.7
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 5.4e-54 214.9 198 52.0
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 5.4e-54 214.9 197 50.8
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 1.2e-53 213.8 198 51.5
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 2.1e-53 213.0 197 52.3
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 2.7e-53 212.6 197 52.3
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 3.5e-53 212.2 197 49.7
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 3.5e-53 212.2 197 51.8
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 6.0e-53 211.5 197 50.8
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 6.0e-53 211.5 197 49.7
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 6.0e-53 211.5 197 50.3
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 7.9e-53 211.1 195 50.8
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.0e-52 210.7 197 51.8
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.3e-52 210.3 197 51.8
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.3e-52 210.3 207 49.3
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 1.3e-52 210.3 197 50.3
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 2.3e-52 209.5 199 50.3
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 3.0e-52 209.1 197 50.3
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 3.9e-52 208.8 197 50.8
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 1.1e-51 207.2 197 49.7
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 1.5e-51 206.8 197 49.2
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 2.5e-51 206.1 197 50.3
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 3.3e-51 205.7 197 49.2
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 7.4e-51 204.5 197 49.7
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 9.6e-51 204.1 197 49.2
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 9.6e-51 204.1 197 49.2
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 2.1e-50 203.0 197 48.7
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 4.0e-49 198.7 197 49.2
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 4.0e-49 198.7 197 49.2
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 1.2e-48 197.2 197 47.7
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 4.5e-48 195.3 197 46.7
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 5.8e-48 194.9 197 47.7
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 5.8e-48 194.9 197 48.2
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 1.1e-46 190.7 186 47.3
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.6e-45 186.8 197 46.7
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 4.6e-45 185.3 213 45.5
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 1.3e-42 177.2 197 45.2
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 3.5e-37 159.1 197 40.1
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.0e-36 157.5 181 47.0
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 1.8e-36 156.8 126 56.3
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.1e-29 133.3 171 46.2
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 5.1e-28 128.6 107 57.0
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.5e-27 126.3 107 56.1
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 3.3e-27 125.9 140 44.3
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 5.7e-27 125.2 197 36.0
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 9.7e-27 124.4 182 40.7
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-26 123.6 105 57.1
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 4.1e-25 119.0 192 38.0
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 5.3e-25 118.6 192 37.0
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 9.1e-25 117.9 195 37.4
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 8.8e-20 101.3 151 39.7
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 1.3e-18 97.4 83 56.6
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 3.7e-18 95.9 91 49.5
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.1e-17 94.4 77 55.8
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 1.5e-14 84.0 83 51.8
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 1.5e-14 84.0 83 51.8
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.2e-14 82.4 175 34.3
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.2e-14 82.4 189 33.3
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 8.8e-12 74.7 63 54.0
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 8.8e-12 74.7 62 54.8
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.1e-11 74.3 62 54.8
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.4e-11 71.6 62 53.2
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 3.1e-09 66.2 54 53.7
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.2e-08 64.3 64 50.0
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 6.5e-07 58.5 52 48.1


User provided reference genes

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