Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0342 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 5.8e-39 163.7 79 100.0
SMO117G0113 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 1.9e-34 148.7 79 88.6
SMO116G0459 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 2.0e-31 138.7 79 86.1
SMO201G0127 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 1.2e-23 112.8 63 85.7
Pp3c16_16660 Physcomitrium patens HOM05D004536 ORTHO05D005628 7.1e-21 103.6 79 59.5
HanXRQChr06g0163971 Helianthus annuus HOM05D004536 ORTHO05D005628 3.5e-20 101.3 79 53.2
TPR.G9637 Trifolium pratense HOM05D004536 ORTHO05D005628 6.0e-20 100.5 79 54.4
VMungo1383G2476 Vigna mungo HOM05D004536 ORTHO05D005628 6.0e-20 100.5 79 50.6
Aqoxy5G00653 Aquilegia oxysepala HOM05D005016 ORTHO05D005628 7.8e-20 100.1 78 53.8
ECA236G2131 Erigeron canadensis HOM05D004536 ORTHO05D005628 7.8e-20 100.1 79 51.9
AagrBONN_evm.TU.Sc2ySwM_362.1715 Anthoceros agrestis HOM05D004536 ORTHO05D005628 1.0e-19 99.8 79 54.4
Lsat_1_v5_gn_8_54521 Lactuca sativa HOM05D004536 ORTHO05D005628 1.3e-19 99.4 79 50.6
arahy.Tifrunner.gnm1.ann1.BFHA12 Arachis hypogaea HOM05D004536 ORTHO05D005628 1.7e-19 99.0 79 50.6
arahy.Tifrunner.gnm1.ann1.RD3VC2 Arachis hypogaea HOM05D004536 ORTHO05D005628 1.7e-19 99.0 79 50.6
Ca_09139_v3 Cicer arietinum L. HOM05D004536 ORTHO05D005628 2.3e-19 98.6 79 51.9
ATR0598G141 Amborella trichopoda HOM05D004536 ORTHO05D005628 3.9e-19 97.8 79 50.6
Oeu024513.3 Olea europaea HOM05D004536 ORTHO05D005628 3.9e-19 97.8 78 52.6
Psat3g023800 Pisum sativum HOM05D004536 ORTHO05D005628 3.9e-19 97.8 79 51.9
Ah.15g093870 Amaranthus hybridus HOM05D000154 ORTHO05D000092 5.1e-19 97.4 79 49.4
CDE10G0909 Ceratophyllum demersum HOM05D000137 ORTHO05D000503 5.1e-19 97.4 79 51.9
Glyma.03G211900 Glycine max HOM05D004536 ORTHO05D005628 5.1e-19 97.4 79 50.6
Lj1g0006956 Lotus japonicus HOM05D004536 ORTHO05D005628 5.1e-19 97.4 79 51.9
Lalb_Chr18g0047231 Lupinus albus HOM05D004536 ORTHO05D005628 5.1e-19 97.4 79 50.6
THA.LOC104801260 Tarenaya hassleriana HOM05D004536 ORTHO05D005628 6.6e-19 97.1 79 50.6
Rhsim01G0282800 Rhododendron simsii HOM05D004536 ORTHO05D005628 1.1e-18 96.3 78 51.3
Ciclev10024323m.g Citrus clementina HOM05D004536 ORTHO05D005628 1.5e-18 95.9 79 50.6
DCAR_012399 Daucus carota HOM05D004536 ORTHO05D005628 1.5e-18 95.9 79 48.1
Lj2A1189G43 Lonicera japonica HOM05D004536 ORTHO05D005628 1.5e-18 95.9 78 51.3
Mapoly0002s0169 Marchantia polymorpha HOM05D004536 ORTHO05D005628 1.5e-18 95.9 79 55.7
Os02g0135300 Oryza sativa ssp. japonica HOM05D004536 ORTHO05D005628 1.5e-18 95.9 78 53.8
AL1G12410 Arabidopsis lyrata HOM05D004536 ORTHO05D005628 1.9e-18 95.5 79 50.6
Phvul.001G204900 Phaseolus vulgaris HOM05D004536 ORTHO05D005628 1.9e-18 95.5 79 49.4
SMO308G0073 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 1.9e-18 95.5 59 78.0
Aa31LG1G9600 Aethionema arabicum HOM05D004536 ORTHO05D005628 2.5e-18 95.1 79 50.6
Carub.0001s0210 Capsella rubella HOM05D004536 ORTHO05D005628 2.5e-18 95.1 79 50.6
Carub.0033s0002 Capsella rubella HOM05D004536 ORTHO05D005628 2.5e-18 95.1 79 50.6
AT1G02970 Arabidopsis thaliana HOM05D004536 ORTHO05D005628 3.3e-18 94.7 79 50.6
CARHR002300 Cardamine hirsuta HOM05D004536 ORTHO05D005628 3.3e-18 94.7 79 50.6
Cfa005976 Carpinus fangiana HOM05D004536 ORTHO05D005628 3.3e-18 94.7 78 52.6
Sc17g0003350 Simmondsia chinensis HOM05D004536 ORTHO05D005628 3.3e-18 94.7 79 49.4
Dinv33024 Davidia involucrata HOM05D004536 ORTHO05D005628 4.3e-18 94.4 78 51.3
Actinidia24840 Actinidia chinensis HOM05D004536 ORTHO05D005628 5.6e-18 94.0 78 51.3
DCAR_018342 Daucus carota HOM05D004536 ORTHO05D005628 5.6e-18 94.0 79 49.4
Medtr7g108500 Medicago truncatula HOM05D004536 ORTHO05D005628 5.6e-18 94.0 79 48.1
Solyc09g074830.3 Solanum lycopersicum HOM05D004536 ORTHO05D005628 5.6e-18 94.0 78 51.3
BcaC07g42280 Brassica carinata HOM05D004536 ORTHO05D005628 7.3e-18 93.6 79 49.4
Thhalv10007445m.g Eutrema salsugineum HOM05D004536 ORTHO05D005628 7.3e-18 93.6 79 49.4
Nn4g25926 Nelumbo nucifera HOM05D004536 ORTHO05D005628 7.3e-18 93.6 77 49.4
PGR090G0002 Punica granatum HOM05D004536 ORTHO05D005628 7.3e-18 93.6 78 50.0
PGR119G2278 Punica granatum HOM05D004536 ORTHO05D005628 7.3e-18 93.6 78 50.0
Sp1g01960 Schrenkiella parvula HOM05D004536 ORTHO05D005628 7.3e-18 93.6 79 49.4
vmacro14989 Vaccinium macrocarpon HOM05D004536 ORTHO05D005628 7.3e-18 93.6 78 50.0
BcaB01g06383 Brassica carinata HOM05D004536 ORTHO05D005628 9.6e-18 93.2 79 49.4
A08p37490 Brassica napus HOM05D004536 ORTHO05D005628 9.6e-18 93.2 79 49.4
C08p00400 Brassica napus HOM05D004536 ORTHO05D005628 9.6e-18 93.2 79 49.4
BolC8t46839H Brassica oleracea HOM05D004536 ORTHO05D005628 9.6e-18 93.2 79 49.4
BraA08t35647Z Brassica rapa HOM05D004536 ORTHO05D005628 9.6e-18 93.2 79 49.4
Zm00001eb209170 Zea mays HOM05D004536 ORTHO05D005628 9.6e-18 93.2 78 50.0
Haze_04870 Corylus avellana HOM05D004536 ORTHO05D005628 1.3e-17 92.8 77 51.9
Eucgr.H01178 Eucalyptus grandis HOM05D004536 ORTHO05D005628 1.3e-17 92.8 79 48.1
Eucgr.H01182 Eucalyptus grandis HOM05D004536 ORTHO05D005628 1.3e-17 92.8 79 48.1
Manes.05G065100 Manihot esculenta HOM05D004536 ORTHO05D005628 1.3e-17 92.8 78 48.7
GSVIVG01010948001 Vitis vinifera HOM05D004536 ORTHO05D005628 1.3e-17 92.8 78 50.0
EL10Ac7g17495 Beta vulgaris HOM05D004536 ORTHO05D005628 1.6e-17 92.4 79 48.1
BcaB03g13494 Brassica carinata HOM05D004536 ORTHO05D005628 1.6e-17 92.4 79 48.1
CAN.G339.41 Capsicum annuum HOM05D004536 ORTHO05D005628 1.6e-17 92.4 78 50.0
COL.COLO4_23401 Corchorus olitorius HOM05D004536 ORTHO05D005628 1.6e-17 92.4 79 48.1
Migut.N01407 Erythranthe guttata HOM05D004536 ORTHO05D005628 1.6e-17 92.4 79 48.1
Potri.002G208251 Populus trichocarpa HOM05D004536 ORTHO05D005628 1.6e-17 92.4 78 47.4
Potri.014G132400 Populus trichocarpa HOM05D004536 ORTHO05D005628 1.6e-17 92.4 78 48.7
SalBow2G0652 Salvia bowleyana HOM05D004536 ORTHO05D005628 1.6e-17 92.4 79 48.1
Glyma.13G025500 Glycine max HOM05D004536 ORTHO05D005628 2.1e-17 92.0 79 46.8
MBI16_g23764_MAGBIO Magnolia biondii HOM05D004536 ORTHO05D005628 2.1e-17 92.0 78 51.3
Sabra02G0151200 Salix brachista HOM05D004536 ORTHO05D005628 2.1e-17 92.0 78 47.4
SEGI_27037 Sequoiadendron giganteum HOM05D004536 ORTHO05D005628 2.1e-17 92.0 79 49.4
Gohir.A11G115900 Gossypium hirsutum HOM05D004536 ORTHO05D005628 2.8e-17 91.7 79 45.6
Gohir.D11G120800 Gossypium hirsutum HOM05D004536 ORTHO05D005628 2.8e-17 91.7 79 45.6
Gorai.007G129700 Gossypium raimondii HOM05D004536 ORTHO05D005628 2.8e-17 91.7 79 45.6
RcHm_v2.0_Chr6g0293261 Rosa chinensis HOM05D004536 ORTHO05D005628 2.8e-17 91.7 77 49.4
Sopen09g029670 Solanum pennellii HOM05D004536 ORTHO05D005628 2.8e-17 91.7 78 50.0
PSO210G1618 Papaver somniferum HOM05D004536 ORTHO05D005628 3.6e-17 91.3 78 50.0
PSO832G3458 Papaver somniferum HOM05D004536 ORTHO05D005628 3.6e-17 91.3 78 50.0
QL12p030151 Quercus lobata HOM05D004536 ORTHO05D005628 3.6e-17 91.3 79 48.1
MD03G1283400 Malus domestica HOM05D004536 ORTHO05D005628 4.8e-17 90.9 79 48.1
Nitab4.5_0001697g0010 Nicotiana tabacum HOM05D004536 ORTHO05D005628 4.8e-17 90.9 78 48.7
Nitab4.5_0009457g0010 Nicotiana tabacum HOM05D004536 ORTHO05D005628 4.8e-17 90.9 78 48.7
PGSC0003DMG400011389 Solanum tuberosum HOM05D004536 ORTHO05D005628 4.8e-17 90.9 78 50.0
Thecc.01G294900 Theobroma cacao HOM05D004536 ORTHO05D005628 4.8e-17 90.9 79 46.8
TAR636G0132 Trochodendron aralioides HOM05D000319 ORTHO05D000903 4.8e-17 90.9 78 50.0
CANSAT25G0197 Cannabis sativa HOM05D004536 ORTHO05D005628 6.2e-17 90.5 77 49.4
CANSAT25G0282 Cannabis sativa HOM05D004536 ORTHO05D005628 6.2e-17 90.5 77 49.4
AUR62008593 Chenopodium quinoa HOM05D004536 ORTHO05D005628 8.1e-17 90.1 79 45.6
BcaC07g42414 Brassica carinata HOM05D004536 ORTHO05D005628 1.1e-16 89.7 79 48.1
A09p68450 Brassica napus HOM05D004536 ORTHO05D005628 1.1e-16 89.7 79 48.1
C08p53070 Brassica napus HOM05D004536 ORTHO05D005628 1.1e-16 89.7 79 48.1
BraA09t42188Z Brassica rapa HOM05D004536 ORTHO05D005628 1.1e-16 89.7 79 48.1
CiPaw.07G104100 Carya illinoinensis HOM05D004536 ORTHO05D005628 1.1e-16 89.7 78 48.7
CBR_g44348 Chara braunii HOM05D004536 ORTHO05D005628 1.1e-16 89.7 81 51.9
MD11G1302700 Malus domestica HOM05D004536 ORTHO05D005628 1.1e-16 89.7 77 49.4
MD11G1303200 Malus domestica HOM05D004536 ORTHO05D005628 1.1e-16 89.7 77 49.4
Prupe.8G256300 Prunus persica HOM05D004536 ORTHO05D005628 1.1e-16 89.7 77 49.4
FvH4_c6g00040 Fragaria vesca HOM05D004536 ORTHO05D005628 1.4e-16 89.4 77 48.1
FAN15G2314 Fragaria x ananassa HOM05D004536 ORTHO05D005628 1.4e-16 89.4 77 48.1
FAN24G0904 Fragaria x ananassa HOM05D004536 ORTHO05D005628 1.4e-16 89.4 77 48.1
Peaxi162Scf00067g00235 Petunia axillaris HOM05D004536 ORTHO05D005628 1.4e-16 89.4 78 48.7
SGA_v2.0_scaffold36G14354 Striga asiatica HOM05D004536 ORTHO05D005628 1.4e-16 89.4 75 49.3
AUR62033185 Chenopodium quinoa HOM05D004536 ORTHO05D005628 1.8e-16 89.0 79 44.3
SHI15387 Sapria himalayana HOM05D004536 ORTHO05D005628 1.8e-16 89.0 77 49.4
Cc01_g20560 Coffea canephora HOM05D004536 ORTHO05D005628 2.4e-16 88.6 79 44.3
Hund18118 Selenicereus undatus HOM05D004536 ORTHO05D005628 2.4e-16 88.6 79 45.6
Migut.M00484 Erythranthe guttata HOM05D004536 ORTHO05D005628 4.0e-16 87.8 79 46.8
Manes.01G215900 Manihot esculenta HOM05D004536 ORTHO05D005628 4.0e-16 87.8 78 47.4
PRCOL_00003559 Prasinoderma coloniale HOM05D004536 ORTHO05D005628 5.3e-16 87.4 82 50.0
SMO198G0014 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 5.3e-16 87.4 57 70.2
FAN20G2283 Fragaria x ananassa HOM05D004536 ORTHO05D005628 9.0e-16 86.7 77 46.8
VMungo0540G1844 Vigna mungo HOM05D004536 ORTHO05D005628 1.2e-15 86.3 79 43.0
MELO3C016039.2 Cucumis melo HOM05D004536 ORTHO05D005628 1.5e-15 85.9 78 47.4
CsaV3_7G029010 Cucumis sativus L. HOM05D004536 ORTHO05D005628 1.5e-15 85.9 78 47.4
Sed0010277 Sechium edule HOM05D004536 ORTHO05D005628 1.5e-15 85.9 79 45.6
ClCG09G006150 Citrullus lanatus HOM05D004536 ORTHO05D005628 2.6e-15 85.1 78 46.2
Migut.K00643 Erythranthe guttata HOM05D004536 ORTHO05D005628 1.7e-14 82.4 79 41.8
Eucgr.H01185 Eucalyptus grandis HOM05D004536 ORTHO05D005628 4.9e-14 80.9 81 44.4
MSTRG.12600 Avicennia marina HOM05D004536 ORTHO05D005628 1.1e-13 79.7 79 40.5
SMO014G0012 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 1.2e-12 76.3 42 85.7
Migut.I00238 Erythranthe guttata HOM05D004536 ORTHO05D005628 2.1e-12 75.5 65 47.7
Migut.I00234 Erythranthe guttata HOM05D004536 ORTHO05D005628 3.9e-11 71.2 65 44.6
SMO271G0028 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 3.9e-11 71.2 40 82.5
SMO201G0239 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 5.1e-11 70.9 40 85.0
Migut.I00246 Erythranthe guttata HOM05D004536 ORTHO05D005628 6.7e-11 70.5 65 46.2
EL10Ac8g19779 Beta vulgaris HOM05D004536 ORTHO05D005628 6.2e-09 63.9 72 41.7
SMO114G0032 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 1.8e-08 62.4 32 90.6
SMO268G0028 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 5.8e-07 57.4 32 81.2
Atru.chr5.1224 Acer truncatum HOM05D004536 ORTHO05D005628 7.6e-07 57.0 49 46.9
Phvul.001G172200 Phaseolus vulgaris HOM05D004536 ORTHO05D005628 2.2e-06 55.5 51 45.1
MCO13G426 Micromonas commoda HOM05D004536 ORTHO05D021246 3.8e-06 54.7 85 35.3
Manes.16G004500 Manihot esculenta HOM05D000083 ORTHO05D000196 4.9e-06 54.3 79 38.0
MCO15G441 Micromonas commoda HOM05D004536 ORTHO05D005628 4.9e-06 54.3 67 44.8
vmacro17326 Vaccinium macrocarpon HOM05D003486 ORTHO05D004600 8.4e-06 53.5 83 37.3


User provided reference genes

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