Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0325 Selaginella moellendorffii HOM05D006276 ORTHO05D007724 4.7e-160 567.8 282 100.0
Pp3c1_29470 Physcomitrium patens HOM05D006276 ORTHO05D007724 8.3e-56 221.5 322 41.9
Mapoly0103s0015 Marchantia polymorpha HOM05D006276 ORTHO05D007724 1.6e-54 217.2 315 40.6
AagrBONN_evm.TU.Sc2ySwM_117.3789 Anthoceros agrestis HOM05D006276 ORTHO05D007724 4.3e-52 209.1 329 39.2
Pp3c14_20160 Physcomitrium patens HOM05D006276 ORTHO05D007724 1.1e-50 204.5 324 39.2
Eucgr.C03044 Eucalyptus grandis HOM05D006276 ORTHO05D007724 1.5e-49 200.7 322 38.2
TAR626G0576 Trochodendron aralioides HOM05D006276 ORTHO05D007724 1.3e-48 197.6 324 38.9
VMungo0647G0182 Vigna mungo HOM05D006276 ORTHO05D007724 7.1e-47 191.8 311 39.2
Phvul.001G034700 Phaseolus vulgaris HOM05D006276 ORTHO05D007724 7.8e-46 188.3 311 37.9
MD08G1060900 Malus domestica HOM05D006276 ORTHO05D007724 1.7e-45 187.2 306 39.2
Manes.16G079900 Manihot esculenta HOM05D006276 ORTHO05D007724 1.7e-45 187.2 313 38.0
arahy.Tifrunner.gnm1.ann1.C6FL8N Arachis hypogaea HOM05D006276 ORTHO05D007724 3.0e-45 186.4 311 38.9
RcHm_v2.0_Chr6g0310851 Rosa chinensis HOM05D006276 ORTHO05D007724 6.6e-45 185.3 316 37.3
arahy.Tifrunner.gnm1.ann1.PS3ZFP Arachis hypogaea HOM05D006276 ORTHO05D007724 8.6e-45 184.9 312 38.1
Dinv27981 Davidia involucrata HOM05D006276 ORTHO05D007724 8.6e-45 184.9 319 37.6
Glyma.17G229400 Glycine max HOM05D006276 ORTHO05D007724 8.6e-45 184.9 310 38.1
Thecc.09G053300 Theobroma cacao HOM05D006276 ORTHO05D007724 1.1e-44 184.5 323 36.8
Potri.006G230000 Populus trichocarpa HOM05D006276 ORTHO05D007724 1.5e-44 184.1 313 39.0
AUR62022071 Chenopodium quinoa HOM05D006276 ORTHO05D007724 1.9e-44 183.7 304 39.5
MD15G1060500 Malus domestica HOM05D006276 ORTHO05D007724 2.5e-44 183.3 317 37.5
TAR383G0425 Trochodendron aralioides HOM05D006276 ORTHO05D007724 4.3e-44 182.6 320 37.8
Rhsim07G0142500 Rhododendron simsii HOM05D006276 ORTHO05D007724 5.6e-44 182.2 317 36.3
DCAR_004430 Daucus carota HOM05D006276 ORTHO05D007724 7.3e-44 181.8 319 37.6
Actinidia01190 Actinidia chinensis HOM05D006276 ORTHO05D007724 1.2e-43 181.0 318 36.5
PSO210G2260 Papaver somniferum HOM05D006276 ORTHO05D007724 1.2e-43 181.0 316 37.7
QL02p001268 Quercus lobata HOM05D006276 ORTHO05D007724 1.6e-43 180.6 315 35.9
GSVIVG01035412001 Vitis vinifera HOM05D006276 ORTHO05D007724 1.6e-43 180.6 322 37.0
FvH4_2g31970 Fragaria vesca HOM05D006276 ORTHO05D007724 2.8e-43 179.9 315 35.9
CANSAT25G3436 Cannabis sativa HOM05D006276 ORTHO05D007724 4.7e-43 179.1 308 37.7
Lalb_Chr14g0367711 Lupinus albus HOM05D006276 ORTHO05D007724 4.7e-43 179.1 322 36.3
TWI34G0536 Tripterygium wilfordii HOM05D006276 ORTHO05D007724 8.1e-43 178.3 303 36.3
Aqoxy5G01259 Aquilegia oxysepala HOM05D006276 ORTHO05D007724 1.1e-42 177.9 317 36.9
HPP92_004831 Vanilla planifolia HOM05D006276 ORTHO05D007724 1.1e-42 177.9 319 39.2
Ciclev10008931m.g Citrus clementina HOM05D006276 ORTHO05D007724 1.8e-42 177.2 322 37.3
RcHm_v2.0_Chr6g0290791 Rosa chinensis HOM05D006276 ORTHO05D007724 1.8e-42 177.2 316 36.7
Cc08_g10550 Coffea canephora HOM05D006276 ORTHO05D007724 4.0e-42 176.0 315 37.1
Duzib168G0463 Durio zibethinus HOM05D006276 ORTHO05D007724 8.9e-42 174.9 318 36.2
Lj5g0000642 Lotus japonicus HOM05D006276 ORTHO05D007724 8.9e-42 174.9 312 38.8
Hma1.2p1_0482F.1_g162490 Hydrangea macrophylla HOM05D006276 ORTHO05D007724 1.2e-41 174.5 317 34.4
Atru.chr7.1056 Acer truncatum HOM05D006276 ORTHO05D007724 4.4e-41 172.6 319 36.1
Sabra06G0178200 Salix brachista HOM05D006276 ORTHO05D007724 4.4e-41 172.6 360 33.9
EL10Ac2g03891 Beta vulgaris HOM05D006276 ORTHO05D007724 5.8e-41 172.2 309 38.5
ClCG08G017020 Citrullus lanatus HOM05D006276 ORTHO05D007724 5.8e-41 172.2 316 38.9
Migut.E01562 Erythranthe guttata HOM05D006276 ORTHO05D007724 7.6e-41 171.8 308 36.0
CiPaw.16G028900 Carya illinoinensis HOM05D006276 ORTHO05D007724 1.3e-40 171.0 314 37.3
PSO210G3453 Papaver somniferum HOM05D006276 ORTHO05D007724 1.3e-40 171.0 317 36.3
COL.COLO4_21052 Corchorus olitorius HOM05D006276 ORTHO05D007724 1.7e-40 170.6 319 35.7
Carub.0006s1034 Capsella rubella HOM05D006276 ORTHO05D007724 2.2e-40 170.2 310 35.8
Gorai.009G045400 Gossypium raimondii HOM05D006276 ORTHO05D007724 2.9e-40 169.9 318 33.6
SHI18737 Sapria himalayana HOM05D006276 ORTHO05D007724 3.8e-40 169.5 308 35.4
Hund19457 Selenicereus undatus HOM05D006276 ORTHO05D007724 4.9e-40 169.1 310 36.1
MSTRG.11659 Avicennia marina HOM05D006276 ORTHO05D007724 6.4e-40 168.7 314 37.3
BraA03t09860Z Brassica rapa HOM05D006276 ORTHO05D007724 1.4e-39 167.5 310 35.5
AUR62009155 Chenopodium quinoa HOM05D006276 ORTHO05D007724 1.4e-39 167.5 328 35.4
CsaV3_2G025580 Cucumis sativus L. HOM05D006276 ORTHO05D007724 1.4e-39 167.5 316 36.7
Medtr1g016410 Medicago truncatula HOM05D006276 ORTHO05D007724 1.4e-39 167.5 313 35.8
SalBow1G4959 Salvia bowleyana HOM05D006276 ORTHO05D007724 1.4e-39 167.5 325 35.1
AT5G11810 Arabidopsis thaliana HOM05D006276 ORTHO05D007724 1.9e-39 167.2 310 35.5
BolC9t59330H Brassica oleracea HOM05D006276 ORTHO05D007724 1.9e-39 167.2 315 36.2
THA.LOC104811244 Tarenaya hassleriana HOM05D006276 ORTHO05D007724 1.9e-39 167.2 312 36.5
Sp6g31790 Schrenkiella parvula HOM05D006276 ORTHO05D007724 2.4e-39 166.8 310 35.5
A10p25940 Brassica napus HOM05D006276 ORTHO05D007724 4.2e-39 166.0 315 35.9
BolC3t13112H Brassica oleracea HOM05D006276 ORTHO05D007724 4.2e-39 166.0 307 35.8
A03p05210 Brassica napus HOM05D006276 ORTHO05D007724 5.4e-39 165.6 310 35.2
Thhalv10014178m.g Eutrema salsugineum HOM05D006276 ORTHO05D007724 5.4e-39 165.6 310 34.5
BraA10t44656Z Brassica rapa HOM05D006276 ORTHO05D007724 9.3e-39 164.9 315 35.9
HanXRQChr17g0538201 Helianthus annuus HOM05D006276 ORTHO05D007724 1.2e-38 164.5 312 35.3
Lsat_1_v5_gn_3_24381 Lactuca sativa HOM05D006276 ORTHO05D007724 1.6e-38 164.1 314 34.4
C03p06010 Brassica napus HOM05D006276 ORTHO05D007724 2.1e-38 163.7 307 35.5
SGA_v2.0_scaffold169G38688 Striga asiatica HOM05D006276 ORTHO05D007724 2.7e-38 163.3 314 35.0
C09p65020 Brassica napus HOM05D006276 ORTHO05D007724 3.5e-38 162.9 315 35.9
Peaxi162Scf00247g00720 Petunia axillaris HOM05D006276 ORTHO05D007724 3.5e-38 162.9 315 34.9
Nitab4.5_0001107g0140 Nicotiana tabacum HOM05D006276 ORTHO05D007724 4.6e-38 162.5 316 33.5
Ca_13170_v3 Cicer arietinum L. HOM05D006276 ORTHO05D007724 7.8e-38 161.8 309 37.2
Lj7A273T8 Lonicera japonica HOM05D006276 ORTHO05D007724 1.0e-37 161.4 312 34.9
Solyc11g070020.3 Solanum lycopersicum HOM05D006276 ORTHO05D007724 1.0e-37 161.4 316 32.9
Sopen11g028700 Solanum pennellii HOM05D006276 ORTHO05D007724 1.0e-37 161.4 316 32.9
Zm00001eb231620 Zea mays HOM05D006276 ORTHO05D007724 1.3e-37 161.0 334 34.7
Gohir.D05G044300 Gossypium hirsutum HOM05D006276 ORTHO05D007724 3.9e-37 159.5 309 33.3
Oeu003983.2 Olea europaea HOM05D006276 ORTHO05D007724 3.9e-37 159.5 313 36.4
Os02g0135600 Oryza sativa ssp. japonica HOM05D006276 ORTHO05D007724 3.9e-37 159.5 342 36.3
BcaC04g19193 Brassica carinata HOM05D006276 ORTHO05D007724 5.1e-37 159.1 317 36.3
TPR.G13142 Trifolium pratense HOM05D006276 ORTHO05D007724 5.1e-37 159.1 306 36.3
Actinidia18190 Actinidia chinensis HOM05D006276 ORTHO05D007724 6.6e-37 158.7 311 33.8
Sed0014483 Sechium edule HOM05D006276 ORTHO05D007724 6.6e-37 158.7 313 35.5
PGSC0003DMG400025517 Solanum tuberosum HOM05D006276 ORTHO05D007724 6.6e-37 158.7 316 32.6
Nitab4.5_0003550g0010 Nicotiana tabacum HOM05D006276 ORTHO05D007724 8.7e-37 158.3 319 34.5
Sed0008348 Sechium edule HOM05D006276 ORTHO05D007724 8.7e-37 158.3 311 35.7
PGR044G2277 Punica granatum HOM05D006276 ORTHO05D007724 1.6e-35 154.1 293 34.1
CDE06G0120 Ceratophyllum demersum HOM05D006276 ORTHO05D007724 2.8e-35 153.3 324 33.6
PSO478G1664 Papaver somniferum HOM05D006276 ORTHO05D007724 8.1e-35 151.8 327 34.3
Haze_18196 Corylus avellana HOM05D006276 ORTHO05D007724 1.1e-34 151.4 313 34.5
PSO782G4309 Papaver somniferum HOM05D006276 ORTHO05D007724 4.0e-34 149.4 302 36.4
Actinidia14712 Actinidia chinensis HOM05D006276 ORTHO05D007724 6.9e-34 148.7 308 33.1
BcaB01g05452 Brassica carinata HOM05D006276 ORTHO05D007724 6.9e-34 148.7 305 34.4
FAN24G2654 Fragaria x ananassa HOM05D006276 ORTHO05D007724 9.0e-34 148.3 390 29.5
SEGI_30057 Sequoiadendron giganteum HOM05D006276 ORTHO05D007724 2.0e-33 147.1 307 35.2
Nn3g20166 Nelumbo nucifera HOM05D006276 ORTHO05D007724 1.7e-32 144.1 282 35.1
ATR0564G292 Amborella trichopoda HOM05D006276 ORTHO05D007724 1.4e-31 141.0 297 34.0
MELO3C010755.2 Cucumis melo HOM05D006276 ORTHO05D007724 1.4e-31 141.0 313 36.1
Glyma.14G094000 Glycine max HOM05D006276 ORTHO05D007724 1.6e-30 137.5 225 38.7
Sc09g0009760 Simmondsia chinensis HOM05D006276 ORTHO05D007724 1.0e-29 134.8 288 34.0
FAN15G3491 Fragaria x ananassa HOM05D006276 ORTHO05D007724 1.5e-28 131.0 287 31.0
Cfa017950 Carpinus fangiana HOM05D006276 ORTHO05D007724 9.6e-28 128.3 234 35.5
CARHR201350 Cardamine hirsuta HOM05D006276 ORTHO05D007724 2.1e-27 127.1 267 33.7
vmacro14246 Vaccinium macrocarpon HOM05D006276 ORTHO05D007724 4.8e-27 125.9 271 32.1
AL6G22560 Arabidopsis lyrata HOM05D006276 ORTHO05D007724 1.4e-26 124.4 234 35.0
Ah.10g034420 Amaranthus hybridus HOM05D006276 ORTHO05D007724 3.1e-26 123.2 294 29.9
CSS0027263 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 5.3e-26 122.5 251 34.7
Prupe.1G412500 Prunus persica HOM05D006276 ORTHO05D007724 5.3e-26 122.5 252 34.9
Aa31LG3G15390 Aethionema arabicum HOM05D006276 ORTHO05D007724 2.0e-25 120.6 325 30.2
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 2.4e-23 113.6 218 36.2
Gohir.A05G042600 Gossypium hirsutum HOM05D006276 ORTHO05D007724 3.5e-22 109.8 259 29.3
Cpa.g.sc7.176 Carica papaya HOM05D006276 ORTHO05D007724 3.3e-20 103.2 228 34.2
CDE04G1132 Ceratophyllum demersum HOM05D000032 ORTHO05D002561 2.4e-18 97.1 276 29.3
FAN20G3006 Fragaria x ananassa HOM05D006276 ORTHO05D007724 1.2e-17 94.7 272 27.6
Lj7P276T14 Lonicera japonica HOM05D006276 ORTHO05D007724 1.2e-17 94.7 159 35.2
CiPaw.15G039400 Carya illinoinensis HOM05D006276 ORTHO05D007724 1.0e-16 91.7 319 25.7
FAN27G2524 Fragaria x ananassa HOM05D006276 ORTHO05D007724 4.2e-15 86.3 267 27.7
Thecc.08G113900 Theobroma cacao HOM05D006276 ORTHO05D007724 1.9e-12 77.4 114 41.2
Oeu018645.1 Olea europaea HOM05D006276 ORTHO05D007724 2.0e-09 67.4 55 60.0


User provided reference genes

Program Settings