Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.8e-193 677.9 330 100.0
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.8e-127 459.1 285 81.8
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.9e-108 395.2 260 77.3
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.1e-95 353.2 297 64.6
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 1.8e-89 333.6 353 46.2
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 6.7e-89 331.6 348 46.0
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 1.1e-88 330.9 348 45.1
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.1e-88 330.9 348 45.1
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 1.1e-88 330.9 348 44.8
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 1.5e-88 330.5 356 46.9
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 1.5e-88 330.5 348 45.1
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.5e-88 330.5 349 45.3
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 3.3e-88 329.3 347 45.2
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 5.7e-88 328.6 352 45.7
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 7.4e-88 328.2 348 44.5
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 7.4e-88 328.2 349 45.0
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.4e-88 328.2 179 87.7
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 2.2e-87 326.6 353 46.2
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 2.8e-87 326.2 349 45.8
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 3.7e-87 325.9 346 46.0
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 4.8e-87 325.5 349 47.3
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 4.8e-87 325.5 349 47.3
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 1.1e-86 324.3 343 45.5
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 2.4e-86 323.2 346 45.1
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 5.3e-86 322.0 340 45.9
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 9.0e-86 321.2 349 44.4
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 1.5e-85 320.5 351 45.6
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 1.5e-85 320.5 344 45.1
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.5e-85 320.5 255 65.1
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 2.0e-85 320.1 350 45.1
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 3.4e-85 319.3 346 46.2
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 4.5e-85 318.9 345 47.8
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 4.5e-85 318.9 341 47.8
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 5.9e-85 318.5 350 44.3
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 7.7e-85 318.2 343 44.9
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 7.7e-85 318.2 354 44.6
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 7.7e-85 318.2 349 44.1
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 2.2e-84 316.6 347 44.7
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 2.9e-84 316.2 350 45.4
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 3.8e-84 315.8 350 42.6
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 1.4e-83 313.9 342 47.1
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 3.2e-83 312.8 343 44.0
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 3.2e-83 312.8 349 44.1
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 4.2e-83 312.4 349 44.1
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 3.6e-82 309.3 325 48.6
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 6.1e-82 308.5 347 44.4
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 7.9e-82 308.1 350 42.9
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.8e-81 307.0 273 61.9
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 3.9e-81 305.8 356 44.1
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 5.1e-81 305.4 353 43.1
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 6.7e-81 305.1 352 41.8
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 8.8e-81 304.7 347 43.2
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 1.1e-80 304.3 365 41.4
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 1.5e-80 303.9 352 44.3
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 2.0e-80 303.5 347 41.8
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 2.0e-80 303.5 343 42.0
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 2.5e-80 303.1 357 42.3
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 3.3e-80 302.8 352 42.6
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 3.3e-80 302.8 354 43.5
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 1.7e-79 300.4 351 41.3
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 4.8e-79 298.9 348 42.2
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 4.8e-79 298.9 348 42.5
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 6.3e-79 298.5 351 42.2
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 1.8e-78 297.0 352 42.0
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 3.1e-78 296.2 346 42.2
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 4.1e-78 295.8 351 41.9
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 9.1e-78 294.7 352 41.5
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 2.6e-77 293.1 351 42.2
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 2.6e-77 293.1 337 44.5
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 4.5e-77 292.4 351 41.0
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 4.5e-77 292.4 325 44.6
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.3e-76 290.8 317 45.4
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 2.2e-76 290.0 353 41.4
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 3.8e-76 289.3 324 43.2
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 5.0e-76 288.9 351 41.0
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 8.5e-76 288.1 351 39.6
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.4e-75 287.3 333 43.5
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 1.9e-75 287.0 349 41.3
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 4.2e-75 285.8 351 39.9
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 7.2e-75 285.0 391 36.8
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 4.7e-74 282.3 352 40.3
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.1e-74 282.0 207 71.5
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.8e-73 280.4 341 40.5
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 2.3e-73 280.0 353 39.7
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 2.3e-73 280.0 353 40.2
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 1.1e-72 277.7 345 40.9
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 1.5e-72 277.3 357 39.5
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 2.0e-72 276.9 332 41.9
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 2.6e-72 276.6 345 39.7
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 9.7e-72 274.6 353 39.4
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 2.2e-71 273.5 351 40.7
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 6.3e-71 271.9 349 40.4
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 3.1e-70 269.6 321 41.7
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.1e-70 269.6 273 57.9
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 7.7e-69 265.0 290 44.8
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 1.3e-68 264.2 445 34.8
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.1e-67 261.2 356 38.5
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.4e-65 254.2 348 38.5
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.3e-64 249.6 347 38.0
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 1.4e-62 244.2 293 41.6
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 7.0e-62 241.9 296 41.6
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 3.5e-61 239.6 348 35.9
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.2e-60 236.9 214 60.3
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.4e-57 227.6 250 55.2
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.5e-56 224.2 187 66.8
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 3.1e-54 216.5 334 35.9
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.5e-53 213.0 135 80.0
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 5.9e-53 212.2 325 35.4
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.9e-51 207.2 253 51.4
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 2.6e-48 196.8 206 45.1
SMO009G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.8e-48 194.9 144 72.9
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.3e-47 194.5 131 77.1
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 8.6e-44 181.8 238 39.9
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 8.9e-41 171.8 162 49.4
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 1.4e-38 164.5 302 32.1
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 4.7e-34 149.4 183 41.0
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 1.5e-32 144.4 168 44.0
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 5.0e-28 129.4 313 28.8
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.6e-28 128.6 81 82.7
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 1.4e-22 111.3 124 41.1
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 1.2e-21 108.2 149 36.2
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 1.3e-20 104.8 109 45.9
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 1.2e-18 98.2 132 37.1
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 2.1e-18 97.4 262 29.4
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 3.2e-14 83.6 193 33.7
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 3.9e-12 76.6 109 37.6
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 4.0e-09 66.6 86 43.0
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 5.2e-09 66.2 94 35.1
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 3.4e-08 63.5 56 46.4
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 5.8e-08 62.8 100 30.0
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 9.9e-08 62.0 111 30.6
SMO174G0213 Selaginella moellendorffii HOM05D004701 ORTHO05D374209 1.1e-06 58.5 51 56.9
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 1.4e-06 58.2 48 50.0


User provided reference genes

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