Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 1.3e-207 726.1 365 100.0
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 1.5e-89 334.0 396 49.0
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 1.3e-88 330.9 386 51.8
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 4.1e-87 325.9 377 48.0
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 5.3e-87 325.5 381 47.2
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 1.2e-86 324.3 386 48.2
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 1.2e-86 324.3 372 51.3
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 2.0e-86 323.6 380 47.1
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 2.6e-86 323.2 382 47.9
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 2.6e-86 323.2 376 47.6
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 5.9e-86 322.0 376 47.6
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 1.3e-85 320.9 384 47.4
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 1.7e-85 320.5 373 46.9
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 2.2e-85 320.1 373 46.9
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 2.9e-85 319.7 384 47.1
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 1.9e-84 317.0 374 46.3
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 2.5e-84 316.6 369 49.1
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 2.5e-84 316.6 384 47.1
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 4.2e-84 315.8 380 47.4
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 7.2e-84 315.1 382 46.6
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 7.2e-84 315.1 375 47.7
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 9.4e-84 314.7 386 46.9
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 2.1e-83 313.5 380 45.3
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 2.7e-83 313.2 379 45.6
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 2.7e-83 313.2 384 45.6
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 2.7e-83 313.2 379 46.4
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 3.6e-83 312.8 380 44.5
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 4.6e-83 312.4 395 45.6
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 6.1e-83 312.0 380 46.3
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 6.1e-83 312.0 369 48.8
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 7.9e-83 311.6 377 46.2
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 1.4e-82 310.8 380 45.5
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 2.3e-82 310.1 380 44.7
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.3e-82 310.1 381 46.5
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 2.3e-82 310.1 380 45.0
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 3.0e-82 309.7 380 46.1
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 3.9e-82 309.3 378 45.8
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 3.9e-82 309.3 375 45.3
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 5.1e-82 308.9 395 45.6
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 5.1e-82 308.9 378 46.8
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 5.1e-82 308.9 380 45.8
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 6.7e-82 308.5 379 45.6
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 6.7e-82 308.5 375 45.1
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 8.8e-82 308.1 380 47.1
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 8.8e-82 308.1 380 45.8
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 1.1e-81 307.8 379 45.4
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 1.1e-81 307.8 376 46.3
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 1.1e-81 307.8 376 47.1
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 2.5e-81 306.6 372 45.7
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 3.3e-81 306.2 382 45.0
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 3.3e-81 306.2 384 46.4
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 5.7e-81 305.4 381 46.2
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.7e-81 305.4 380 45.3
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 5.7e-81 305.4 380 45.3
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 9.7e-81 304.7 381 43.6
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 1.3e-80 304.3 385 46.0
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 1.7e-80 303.9 382 44.5
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.7e-80 303.9 380 45.0
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 2.2e-80 303.5 380 45.3
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 2.2e-80 303.5 371 45.3
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 2.2e-80 303.5 380 44.5
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 2.2e-80 303.5 375 44.5
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 2.8e-80 303.1 380 45.8
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.8e-80 302.4 380 44.7
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 4.8e-80 302.4 379 45.9
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 6.3e-80 302.0 377 46.2
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 6.3e-80 302.0 381 44.4
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 8.2e-80 301.6 380 44.5
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 1.1e-79 301.2 386 43.5
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.4e-79 300.1 394 44.2
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 2.4e-79 300.1 380 43.4
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 3.1e-79 299.7 385 44.9
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 3.1e-79 299.7 388 44.8
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 4.1e-79 299.3 370 44.9
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.2e-78 297.7 380 44.2
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 1.5e-78 297.4 407 43.2
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 3.4e-78 296.2 433 41.6
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 1.3e-77 294.3 378 42.6
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 2.2e-77 293.5 379 44.3
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 2.2e-77 293.5 385 45.2
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 3.8e-77 292.7 385 44.4
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 1.1e-76 291.2 379 42.7
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 1.9e-76 290.4 382 44.2
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 4.2e-76 289.3 371 44.5
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.2e-75 287.7 371 44.2
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.6e-75 287.3 405 42.0
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 6.1e-75 285.4 381 42.5
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 7.9e-75 285.0 383 43.3
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 5.1e-74 282.3 394 43.4
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 8.8e-74 281.6 374 43.3
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 1.7e-72 277.3 381 41.7
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 2.2e-72 276.9 407 39.6
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 2.4e-71 273.5 377 44.3
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.2e-70 271.2 350 44.6
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 3.5e-70 269.6 415 42.9
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 1.0e-69 268.1 363 43.3
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 2.9e-69 266.5 389 42.4
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 3.2e-68 263.1 374 41.2
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 9.4e-68 261.5 382 40.3
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.0e-66 258.1 411 38.9
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 1.0e-66 258.1 299 46.5
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 2.3e-66 256.9 376 41.2
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 3.3e-65 253.1 369 41.5
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 7.5e-65 251.9 392 39.8
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 9.7e-65 251.5 401 39.7
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 1.4e-63 247.7 381 39.6
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 6.1e-59 232.3 380 39.5
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 1.2e-57 228.0 412 36.9
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 5.7e-57 225.7 383 37.6
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 2.2e-56 223.8 264 45.5
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 1.2e-54 218.0 386 38.9
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 1.0e-53 214.9 378 36.5
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 5.4e-47 192.6 296 38.2
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 2.7e-46 190.3 288 40.6
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 5.6e-44 182.6 419 32.5
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 1.5e-41 174.5 227 43.2
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 4.6e-38 162.9 255 40.0
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 7.0e-31 139.0 323 34.1
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 3.3e-28 130.2 340 32.4
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 9.5e-28 128.6 149 50.3
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 6.8e-26 122.5 157 40.8
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 4.6e-22 109.8 217 32.7
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 3.1e-18 97.1 127 44.1
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 6.4e-16 89.4 111 45.0
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.9e-15 87.8 111 44.1
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.1e-15 86.7 111 44.1
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.1e-14 84.3 111 43.2
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 1.1e-12 78.6 90 45.6
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 7.3e-12 75.9 97 43.3
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 5.2e-10 69.7 94 42.6
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 4.4e-09 66.6 110 40.9
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 7.6e-09 65.9 59 59.3
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 2.2e-08 64.3 58 55.2
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 2.9e-08 63.9 267 24.7
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 2.4e-07 60.8 92 35.9
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 4.2e-07 60.1 58 55.2


User provided reference genes

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