Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 0.0e+00 1078.5 569 100.0
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 7.1e-22 109.8 199 32.7
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 2.3e-20 104.8 207 31.4
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 3.9e-20 104.0 207 30.9
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 6.7e-20 103.2 180 33.3
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 6.7e-20 103.2 226 29.2
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 8.7e-20 102.8 213 30.5
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 8.7e-20 102.8 180 32.2
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.5e-19 102.1 207 30.4
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.9e-19 101.7 180 32.2
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 1.9e-19 101.7 207 30.4
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.9e-19 101.7 207 30.4
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.9e-19 101.7 180 33.9
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 2.5e-19 101.3 229 30.1
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 2.5e-19 101.3 196 32.7
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 2.5e-19 101.3 179 32.4
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 3.3e-19 100.9 205 31.7
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 3.3e-19 100.9 212 30.2
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 3.3e-19 100.9 207 30.0
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 4.3e-19 100.5 172 34.3
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 5.6e-19 100.1 200 30.0
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 5.6e-19 100.1 205 32.2
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 7.4e-19 99.8 204 29.9
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 1.3e-18 99.0 206 30.1
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.3e-18 99.0 227 29.1
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 1.3e-18 99.0 226 28.8
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 1.3e-18 99.0 200 32.0
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.6e-18 98.6 180 32.8
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 2.1e-18 98.2 199 32.2
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 2.1e-18 98.2 200 31.0
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 2.8e-18 97.8 171 33.3
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 2.8e-18 97.8 200 31.5
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 2.8e-18 97.8 174 33.3
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 2.8e-18 97.8 206 29.6
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 2.8e-18 97.8 201 29.9
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 3.7e-18 97.4 189 31.2
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 3.7e-18 97.4 208 29.3
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 3.7e-18 97.4 197 31.0
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 3.7e-18 97.4 197 31.0
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 3.7e-18 97.4 197 29.9
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 4.8e-18 97.1 177 32.2
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 4.8e-18 97.1 178 32.0
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 4.8e-18 97.1 178 32.0
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 4.8e-18 97.1 177 31.6
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 6.2e-18 96.7 205 30.7
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 8.2e-18 96.3 176 31.2
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 8.2e-18 96.3 171 33.9
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 8.2e-18 96.3 178 32.0
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.1e-17 95.9 205 28.8
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 1.1e-17 95.9 206 33.5
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 1.1e-17 95.9 206 33.5
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 1.1e-17 95.9 230 28.7
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 1.1e-17 95.9 204 30.9
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.1e-17 95.9 204 29.4
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 1.1e-17 95.9 204 29.4
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 1.1e-17 95.9 197 29.9
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.1e-17 95.9 200 29.5
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 1.4e-17 95.5 203 31.0
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 1.4e-17 95.5 174 33.9
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 1.4e-17 95.5 177 32.2
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.8e-17 95.1 204 29.4
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 2.4e-17 94.7 178 34.8
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 2.4e-17 94.7 189 32.8
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 2.4e-17 94.7 169 30.8
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 3.1e-17 94.4 179 32.4
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 3.1e-17 94.4 178 33.7
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 4.0e-17 94.0 206 33.0
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 4.0e-17 94.0 193 29.5
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 4.0e-17 94.0 205 28.8
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 4.0e-17 94.0 229 28.4
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 5.3e-17 93.6 241 28.6
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 5.3e-17 93.6 172 32.0
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 5.3e-17 93.6 206 31.6
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 6.9e-17 93.2 229 26.6
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 6.9e-17 93.2 173 31.2
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 9.0e-17 92.8 199 29.1
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 9.0e-17 92.8 278 27.7
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 1.2e-16 92.4 240 26.7
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 1.2e-16 92.4 200 29.5
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 1.2e-16 92.4 178 31.5
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 1.5e-16 92.0 206 30.6
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.5e-16 92.0 182 30.2
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 1.5e-16 92.0 206 31.6
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 2.0e-16 91.7 240 26.7
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 2.0e-16 91.7 205 29.3
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 2.6e-16 91.3 200 29.0
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 3.4e-16 90.9 240 27.9
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 3.4e-16 90.9 240 27.9
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 3.4e-16 90.9 240 27.9
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 3.4e-16 90.9 216 29.2
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 4.5e-16 90.5 166 31.3
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 4.5e-16 90.5 176 30.7
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 4.5e-16 90.5 227 29.5
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 4.5e-16 90.5 177 31.6
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 4.5e-16 90.5 204 34.3
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 5.8e-16 90.1 241 26.6
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 5.8e-16 90.1 173 30.1
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 5.8e-16 90.1 205 28.3
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 5.8e-16 90.1 237 27.8
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 7.6e-16 89.7 174 29.9
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 1.0e-15 89.4 234 31.2
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 1.0e-15 89.4 174 31.0
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 1.0e-15 89.4 173 31.2
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 1.7e-15 88.6 165 34.5
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.7e-15 88.6 226 26.5
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 2.2e-15 88.2 205 28.8
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 2.2e-15 88.2 167 32.9
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 8.4e-15 86.3 176 30.7
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 1.1e-14 85.9 172 30.8
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 1.4e-14 85.5 201 30.3
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 5.5e-14 83.6 176 28.4
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 2.3e-12 78.2 185 29.2
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 6.7e-12 76.6 237 25.7
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 8.7e-12 76.3 126 36.5
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 1.1e-11 75.9 214 28.0
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 1.9e-11 75.1 151 29.8
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 1.9e-11 75.1 132 33.3
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 2.5e-11 74.7 179 30.7
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 2.8e-10 71.2 139 31.7
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 4.8e-10 70.5 147 29.9
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 5.9e-08 63.5 117 36.8
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 3.8e-07 60.8 75 38.7
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.8e-07 60.8 102 39.2
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 5.0e-07 60.5 102 39.2
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 2.5e-06 58.2 168 27.4


User provided reference genes

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