Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 2.6e-186 655.2 329 100.0
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 1.1e-102 377.5 336 56.0
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 4.2e-99 365.5 321 57.6
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 1.3e-97 360.5 287 60.6
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 5.1e-97 358.6 344 54.4
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 2.1e-95 353.2 307 57.0
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 4.8e-95 352.1 324 55.9
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 6.2e-95 351.7 333 55.0
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 3.1e-94 349.4 330 55.5
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 4.0e-94 349.0 304 56.9
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 1.2e-93 347.4 323 55.4
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.2e-93 347.4 338 55.0
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 3.4e-93 345.9 328 54.3
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 3.4e-93 345.9 333 54.4
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 4.5e-93 345.5 333 54.4
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 5.8e-93 345.1 333 54.7
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 5.8e-93 345.1 307 56.7
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 7.6e-93 344.7 307 56.7
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 7.6e-93 344.7 328 54.6
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 7.6e-93 344.7 329 54.1
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 7.6e-93 344.7 324 55.6
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 9.9e-93 344.4 321 55.5
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 1.3e-92 344.0 318 55.3
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 1.7e-92 343.6 324 54.9
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 2.2e-92 343.2 294 58.8
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 2.2e-92 343.2 323 55.1
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 2.9e-92 342.8 324 54.6
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 6.4e-92 341.7 335 54.6
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 6.4e-92 341.7 326 54.9
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 6.4e-92 341.7 302 56.0
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 8.4e-92 341.3 321 54.8
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 8.4e-92 341.3 307 56.4
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 8.4e-92 341.3 330 54.2
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 8.4e-92 341.3 282 58.9
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 1.1e-91 340.9 334 53.3
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 1.4e-91 340.5 321 54.2
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 1.4e-91 340.5 325 53.5
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 1.4e-91 340.5 329 54.1
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 1.9e-91 340.1 282 57.1
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 2.4e-91 339.7 330 53.9
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 3.2e-91 339.3 316 56.6
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 3.2e-91 339.3 332 54.5
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 3.2e-91 339.3 327 54.7
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 4.2e-91 339.0 334 53.6
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 5.5e-91 338.6 322 55.0
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 7.1e-91 338.2 331 53.2
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 9.3e-91 337.8 330 54.2
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.2e-90 337.4 336 54.5
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 1.2e-90 337.4 323 54.2
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 1.6e-90 337.0 302 54.3
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 1.6e-90 337.0 340 53.5
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 1.6e-90 337.0 332 53.9
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 2.1e-90 336.7 308 55.2
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 2.1e-90 336.7 332 53.3
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 2.7e-90 336.3 329 52.9
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 2.7e-90 336.3 311 55.6
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 2.7e-90 336.3 333 54.1
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 2.7e-90 336.3 312 54.8
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 4.6e-90 335.5 339 53.4
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 6.0e-90 335.1 331 53.5
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 6.0e-90 335.1 286 57.3
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 7.9e-90 334.7 333 52.9
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 1.0e-89 334.3 337 52.8
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 1.8e-89 333.6 300 57.7
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 1.8e-89 333.6 322 54.0
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.8e-89 333.6 331 52.6
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 1.8e-89 333.6 331 52.6
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.8e-89 333.6 324 52.5
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 2.3e-89 333.2 325 52.9
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 3.0e-89 332.8 321 53.9
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 3.0e-89 332.8 308 54.5
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 5.1e-89 332.0 331 52.3
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 6.7e-89 331.6 309 55.0
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 8.7e-89 331.3 334 52.1
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 1.1e-88 330.9 323 53.6
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 1.5e-88 330.5 329 53.5
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 1.9e-88 330.1 309 56.3
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 1.9e-88 330.1 323 52.0
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 3.3e-88 329.3 341 53.1
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 3.3e-88 329.3 338 53.0
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 4.3e-88 328.9 323 52.9
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 7.4e-88 328.2 282 57.8
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 7.4e-88 328.2 339 52.8
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 7.4e-88 328.2 313 55.0
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 8.2e-87 324.7 340 51.2
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 1.1e-86 324.3 310 54.2
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.4e-86 323.9 335 51.6
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 1.8e-86 323.6 324 52.5
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 1.8e-86 323.6 324 52.2
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 1.8e-86 323.6 337 51.0
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 2.4e-86 323.2 321 52.3
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 2.4e-86 323.2 320 51.9
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 3.1e-86 322.8 321 52.6
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 3.1e-86 322.8 336 51.8
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 4.0e-86 322.4 328 50.6
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 6.9e-86 321.6 309 52.8
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 6.9e-86 321.6 288 55.2
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 9.0e-86 321.2 337 51.3
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 9.0e-86 321.2 313 52.7
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 9.0e-86 321.2 318 55.0
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 9.0e-86 321.2 328 51.5
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 1.5e-85 320.5 325 51.1
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 1.5e-85 320.5 325 51.1
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 1.5e-85 320.5 316 53.2
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 3.4e-85 319.3 336 50.9
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 7.6e-85 318.2 325 50.5
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 7.6e-85 318.2 349 50.1
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 7.6e-85 318.2 321 53.0
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 1.3e-84 317.4 334 51.5
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 1.3e-84 317.4 343 49.6
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 2.2e-84 316.6 325 50.2
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 2.2e-84 316.6 325 50.8
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 2.9e-84 316.2 327 50.2
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 6.5e-84 315.1 334 50.0
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 6.5e-84 315.1 332 50.0
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 6.5e-84 315.1 325 50.8
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 8.4e-84 314.7 328 50.6
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 1.1e-83 314.3 333 49.5
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 1.1e-83 314.3 325 50.5
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 1.9e-83 313.5 331 49.5
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 4.2e-83 312.4 328 49.4
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 7.1e-83 311.6 331 49.8
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 7.1e-83 311.6 331 49.8
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 4.6e-82 308.9 271 56.5
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 4.6e-82 308.9 313 51.8
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 1.3e-81 307.4 328 50.0
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 1.8e-81 307.0 331 48.9
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 3.9e-81 305.8 362 48.3
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 2.5e-80 303.1 309 52.8
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 7.4e-80 301.6 315 50.5
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 9.7e-80 301.2 318 50.9
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.3e-79 300.8 310 51.6
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.8e-79 299.7 333 49.2
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 6.3e-79 298.5 312 50.3
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 1.4e-78 297.4 263 57.8
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 6.1e-74 282.0 264 52.7
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 1.0e-73 281.2 321 47.4
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 4.3e-72 275.8 258 55.0
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 5.3e-70 268.9 324 45.4
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 9.1e-70 268.1 289 46.4
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 4.7e-66 255.8 266 50.0
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 4.8e-63 245.7 316 46.2
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 1.4e-62 244.2 279 48.4
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 8.8e-57 224.9 276 46.7
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 3.3e-56 223.0 217 52.5
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 9.7e-56 221.5 185 57.8
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 9.7e-56 221.5 186 57.0
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 9.7e-56 221.5 192 54.7
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 1.4e-54 217.6 201 52.7
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 3.1e-54 216.5 218 49.5
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 5.5e-51 205.7 182 58.2
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 2.4e-46 190.3 247 43.7
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 9.5e-35 151.8 298 31.5
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 4.5e-29 132.9 116 54.3
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 1.7e-28 131.0 111 61.3
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.9e-27 127.5 155 45.2
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 2.8e-26 123.6 112 57.1
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.0e-25 121.7 100 60.0
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 2.4e-22 110.5 217 30.9
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 1.0e-20 105.1 104 48.1
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 1.3e-20 104.8 109 48.6
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 1.2e-13 81.6 88 42.0
Cfa027263 Carpinus fangiana HOM05D004378 ORTHO05D125857 2.4e-06 57.4 225 26.2


User provided reference genes

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