Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 4.4e-121 438.0 221 100.0
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 5.3e-82 308.1 220 68.2
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 2.2e-80 302.8 219 68.5
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 7.9e-78 294.3 224 65.2
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.4e-77 293.5 218 66.5
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 3.0e-77 292.4 224 64.3
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 1.5e-76 290.0 221 60.2
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 3.3e-76 288.9 218 64.2
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 4.3e-76 288.5 218 65.1
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.7e-75 286.6 221 61.1
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 6.3e-75 284.6 219 64.4
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 6.3e-75 284.6 219 61.2
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 8.2e-75 284.3 219 62.6
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 1.1e-74 283.9 227 60.4
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 1.4e-74 283.5 222 62.2
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 1.8e-74 283.1 221 62.4
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 2.4e-74 282.7 222 61.7
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 2.4e-74 282.7 218 61.0
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 3.1e-74 282.3 219 59.8
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 4.1e-74 282.0 220 60.9
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 9.1e-74 280.8 221 62.4
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 1.2e-73 280.4 214 64.5
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.5e-73 280.0 219 63.0
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 1.5e-73 280.0 219 61.6
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.0e-73 279.6 220 62.7
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 2.0e-73 279.6 219 61.2
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 2.6e-73 279.3 219 62.6
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 3.4e-73 278.9 215 62.3
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 4.5e-73 278.5 223 62.3
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 4.5e-73 278.5 219 62.6
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 5.9e-73 278.1 219 62.6
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 5.9e-73 278.1 223 62.3
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 5.9e-73 278.1 221 61.5
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 7.7e-73 277.7 222 62.6
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 7.7e-73 277.7 221 60.6
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 7.7e-73 277.7 219 62.1
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 7.7e-73 277.7 220 60.0
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 7.7e-73 277.7 219 62.1
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 1.0e-72 277.3 223 62.3
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 1.3e-72 276.9 221 60.6
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 1.3e-72 276.9 222 62.2
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 1.7e-72 276.6 222 59.5
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 2.2e-72 276.2 216 61.6
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.2e-72 276.2 219 62.1
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.2e-72 276.2 220 59.5
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.2e-72 276.2 220 59.5
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 2.2e-72 276.2 225 61.3
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 2.9e-72 275.8 219 60.7
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 3.8e-72 275.4 221 59.7
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 3.8e-72 275.4 217 60.8
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 5.0e-72 275.0 218 62.8
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 5.0e-72 275.0 221 62.4
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 5.0e-72 275.0 221 61.5
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 5.0e-72 275.0 215 61.9
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 6.5e-72 274.6 221 62.4
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 8.5e-72 274.2 223 62.3
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 1.1e-71 273.9 224 60.7
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 1.4e-71 273.5 221 59.7
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 1.4e-71 273.5 221 62.0
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 1.9e-71 273.1 216 62.5
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 1.9e-71 273.1 219 61.2
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 4.2e-71 271.9 220 61.8
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 5.5e-71 271.6 220 61.4
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 5.5e-71 271.6 215 60.0
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 7.2e-71 271.2 212 60.4
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 7.2e-71 271.2 220 59.1
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 9.4e-71 270.8 208 63.5
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 9.4e-71 270.8 230 60.0
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 9.4e-71 270.8 220 60.0
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 1.6e-70 270.0 221 61.5
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 1.6e-70 270.0 221 61.5
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 1.6e-70 270.0 220 59.1
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 2.1e-70 269.6 215 59.5
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 2.7e-70 269.2 221 60.6
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 3.6e-70 268.9 219 59.4
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 3.6e-70 268.9 219 59.4
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 3.6e-70 268.9 224 58.9
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 4.7e-70 268.5 215 61.9
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 6.1e-70 268.1 228 59.2
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 7.9e-70 267.7 217 59.4
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 1.0e-69 267.3 219 59.4
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 1.0e-69 267.3 223 61.0
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.4e-69 266.9 211 61.6
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 1.4e-69 266.9 217 60.4
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 1.4e-69 266.9 220 58.2
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 3.0e-69 265.8 219 57.5
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 3.9e-69 265.4 219 57.5
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 3.9e-69 265.4 215 60.0
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 1.1e-68 263.8 223 57.0
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.5e-68 263.5 218 57.3
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 2.0e-68 263.1 215 60.5
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 2.6e-68 262.7 220 58.6
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 3.3e-68 262.3 222 58.1
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 7.4e-68 261.2 226 54.0
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 1.3e-67 260.4 218 56.4
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 2.2e-67 259.6 215 58.1
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 2.2e-67 259.6 215 59.1
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.4e-66 256.9 208 60.6
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 1.4e-66 256.9 208 55.3
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 1.4e-66 256.9 215 58.1
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 1.8e-66 256.5 208 60.6
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 1.8e-66 256.5 216 59.3
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 2.4e-66 256.1 215 57.7
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 3.1e-66 255.8 208 60.6
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 5.3e-66 255.0 245 53.9
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.2e-65 253.8 208 60.6
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.2e-65 253.8 226 53.1
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 1.2e-65 253.8 226 53.1
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 1.6e-65 253.4 212 57.1
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 1.6e-65 253.4 214 56.1
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.6e-65 253.4 227 52.0
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 2.6e-65 252.7 230 57.4
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 2.6e-65 252.7 212 56.6
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 5.9e-65 251.5 218 52.8
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 7.7e-65 251.1 219 53.4
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 1.0e-61 240.7 320 43.1
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 4.0e-61 238.8 221 54.3
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 8.8e-61 237.7 260 50.8
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 9.7e-60 234.2 219 53.9
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 1.7e-59 233.4 223 52.9
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 1.1e-58 230.7 221 52.9
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 5.9e-57 224.9 352 38.1
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 6.5e-56 221.5 173 64.2
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 1.1e-55 220.7 153 69.3
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 8.0e-54 214.5 152 69.1
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 2.3e-53 213.0 153 67.3
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 4.1e-50 202.2 176 60.2
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 5.4e-50 201.8 152 65.8
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 1.3e-43 180.6 165 58.2
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 4.1e-42 175.6 125 67.2
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 3.5e-41 172.6 130 64.6
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 5.0e-40 168.7 107 75.7
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 1.2e-38 164.1 136 59.6
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 8.0e-38 161.4 111 70.3
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 8.0e-38 161.4 111 70.3
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 3.4e-36 156.0 198 44.9
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 7.5e-36 154.8 189 42.9
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 1.8e-34 150.2 99 70.7
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 1.5e-31 140.6 95 69.5
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 9.5e-31 137.9 218 36.2
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 3.2e-26 122.9 112 51.8
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 4.1e-26 122.5 113 51.3
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 2.3e-24 116.7 116 51.7
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 1.2e-20 104.4 83 57.8
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 2.0e-20 103.6 102 47.1
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 5.4e-18 95.5 139 36.0
MCO08G354 Micromonas commoda HOM05D004698 ORTHO05D005699 3.0e-16 89.7 199 29.6
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 6.6e-16 88.6 117 39.3
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 1.2e-14 84.3 81 51.9
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 7.6e-12 75.1 123 37.4
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 3.9e-08 62.8 55 52.7
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 5.6e-07 58.9 78 37.2
Pp3s30_940 Physcomitrium patens HOM05D001730 ORTHO05D308549 1.2e-06 57.8 198 25.8
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 1.6e-06 57.4 47 55.3


User provided reference genes

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