Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0207 Selaginella moellendorffii HOM05D004726 ORTHO05D005986 0.0e+00 1641.3 821 100.0
Aqoxy5G03586 Aquilegia oxysepala HOM05D004726 ORTHO05D005986 3.0e-308 1061.6 787 63.8
Nn4g22464 Nelumbo nucifera HOM05D004726 ORTHO05D005986 3.4e-307 1058.1 785 63.7
Manes.17G107900 Manihot esculenta HOM05D004726 ORTHO05D005986 3.7e-306 1054.7 772 64.4
Mapoly0014s0026 Marchantia polymorpha HOM05D004726 ORTHO05D005986 1.1e-305 1053.1 813 61.0
Ciclev10014283m.g Citrus clementina HOM05D004726 ORTHO05D005986 2.4e-305 1052.0 797 62.7
Thecc.04G026000 Theobroma cacao HOM05D004726 ORTHO05D005986 2.4e-305 1052.0 672 70.1
Prupe.3G298800 Prunus persica HOM05D004726 ORTHO05D005986 3.2e-305 1051.6 790 62.2
FAN02G2743 Fragaria x ananassa HOM05D004726 ORTHO05D005986 4.1e-305 1051.2 792 62.2
Phvul.004G058000 Phaseolus vulgaris HOM05D004726 ORTHO05D005986 4.1e-305 1051.2 793 62.4
FvH4_6g52410 Fragaria vesca HOM05D004726 ORTHO05D005986 9.2e-305 1050.0 792 62.8
RcHm_v2.0_Chr2g0174041 Rosa chinensis HOM05D004726 ORTHO05D005986 9.2e-305 1050.0 806 62.5
FAN05G3820 Fragaria x ananassa HOM05D004726 ORTHO05D005986 1.2e-304 1049.7 792 62.6
ATR0824G115 Amborella trichopoda HOM05D004726 ORTHO05D005986 1.6e-304 1049.3 753 64.0
FAN14G5799 Fragaria x ananassa HOM05D004726 ORTHO05D005986 4.5e-304 1047.7 792 62.6
VMungo0464G1053 Vigna mungo HOM05D004726 ORTHO05D005986 5.9e-304 1047.3 798 61.5
Lalb_Chr21g0317631 Lupinus albus HOM05D004726 ORTHO05D005986 7.8e-304 1047.0 798 61.5
Glyma.05G072300 Glycine max HOM05D004726 ORTHO05D005986 1.0e-303 1046.6 798 61.5
MD09G1018400 Malus domestica HOM05D004726 ORTHO05D005986 1.0e-303 1046.6 784 62.9
Gohir.D09G032300 Gossypium hirsutum HOM05D004726 ORTHO05D005986 1.9e-302 1042.3 672 69.0
PGR083G2241 Punica granatum HOM05D004726 ORTHO05D005986 2.5e-302 1042.0 801 62.4
Dinv33391 Davidia involucrata HOM05D004726 ORTHO05D005986 4.3e-302 1041.2 771 62.9
MD17G1018800 Malus domestica HOM05D004726 ORTHO05D005986 4.3e-302 1041.2 795 62.1
COL.COLO4_29260 Corchorus olitorius HOM05D004726 ORTHO05D005986 7.3e-302 1040.4 773 62.1
HPP92_015461 Vanilla planifolia HOM05D004726 ORTHO05D005986 7.3e-302 1040.4 804 61.2
Cfa007289 Carpinus fangiana HOM05D004726 ORTHO05D005986 9.5e-302 1040.0 774 63.2
Gohir.A09G032200 Gossypium hirsutum HOM05D004726 ORTHO05D005986 9.5e-302 1040.0 672 68.9
Gorai.006G037200 Gossypium raimondii HOM05D004726 ORTHO05D005986 9.5e-302 1040.0 672 68.9
Sc07g0004390 Simmondsia chinensis HOM05D004726 ORTHO05D005986 1.6e-301 1039.3 797 61.0
Duzib187G0212 Durio zibethinus HOM05D004726 ORTHO05D005986 2.1e-301 1038.9 756 63.8
Lju41A46T85 Lonicera japonica HOM05D004726 ORTHO05D005986 6.1e-301 1037.3 770 62.9
CSS0005841 Camellia sinensis var. sinensis HOM05D004726 ORTHO05D005986 8.0e-301 1036.9 673 70.3
Sabra16G0217200 Salix brachista HOM05D004726 ORTHO05D005986 1.0e-300 1036.6 778 62.7
GSVIVG01003968001 Vitis vinifera HOM05D004726 ORTHO05D005986 1.0e-300 1036.6 780 63.5
CSS0026983 Camellia sinensis var. sinensis HOM05D004726 ORTHO05D005986 4.0e-300 1034.6 673 70.1
CiPaw.03G049600 Carya illinoinensis HOM05D004726 ORTHO05D005986 6.8e-300 1033.9 780 62.8
QL02p073257 Quercus lobata HOM05D004726 ORTHO05D005986 6.8e-300 1033.9 799 61.8
Sed0019499 Sechium edule HOM05D004726 ORTHO05D005986 1.2e-299 1033.1 821 60.5
HanXRQChr14g0451431 Helianthus annuus HOM05D004726 ORTHO05D005986 1.5e-299 1032.7 777 62.7
Potri.001G336400 Populus trichocarpa HOM05D004726 ORTHO05D005986 1.5e-299 1032.7 782 62.1
Cpa.g.sc130.48 Carica papaya HOM05D004726 ORTHO05D005986 2.6e-299 1031.9 777 62.7
Sed0012188 Sechium edule HOM05D004726 ORTHO05D005986 5.8e-299 1030.8 804 60.7
TPR.G7511 Trifolium pratense HOM05D004726 ORTHO05D005986 5.8e-299 1030.8 786 61.8
ECA238G2031 Erigeron canadensis HOM05D004726 ORTHO05D005986 7.5e-299 1030.4 773 62.6
Ca_04399_v3 Cicer arietinum L. HOM05D004726 ORTHO05D005986 1.3e-298 1029.6 775 61.8
MELO3C014786.2 Cucumis melo HOM05D004726 ORTHO05D005986 2.2e-298 1028.9 801 61.2
DCAR_002964 Daucus carota HOM05D004726 ORTHO05D005986 2.2e-298 1028.9 802 61.5
PSO478G3762 Papaver somniferum HOM05D004726 ORTHO05D005986 2.2e-298 1028.9 798 60.8
Thhalv10020079m.g Eutrema salsugineum HOM05D004726 ORTHO05D005986 4.9e-298 1027.7 775 62.1
Oeu048592.1 Olea europaea HOM05D004726 ORTHO05D005986 4.9e-298 1027.7 809 60.3
Os01g0904500 Oryza sativa ssp. japonica HOM05D004726 ORTHO05D005986 4.9e-298 1027.7 794 61.7
PSO017G0372 Papaver somniferum HOM05D004726 ORTHO05D005986 4.9e-298 1027.7 773 61.8
Aa31LG5G10860 Aethionema arabicum HOM05D004726 ORTHO05D005986 1.1e-297 1026.5 799 60.7
TWI56G1181 Tripterygium wilfordii HOM05D004726 ORTHO05D005986 1.4e-297 1026.2 798 61.9
arahy.Tifrunner.gnm1.ann1.2353RE Arachis hypogaea HOM05D004726 ORTHO05D005986 1.9e-297 1025.8 797 61.4
CsaV3_3G027570 Cucumis sativus L. HOM05D004726 ORTHO05D005986 1.9e-297 1025.8 800 60.8
Cc07_g00350 Coffea canephora HOM05D004726 ORTHO05D005986 2.4e-297 1025.4 780 61.2
CANSAT64G1163 Cannabis sativa HOM05D004726 ORTHO05D005986 3.2e-297 1025.0 673 68.4
Medtr0044s0180 Medicago truncatula HOM05D004726 ORTHO05D005986 3.2e-297 1025.0 784 63.1
BraA03t12409Z Brassica rapa HOM05D004726 ORTHO05D005986 4.1e-297 1024.6 776 61.2
Lj2g0016129 Lotus japonicus HOM05D004726 ORTHO05D005986 4.1e-297 1024.6 801 60.9
Oeu033801.1 Olea europaea HOM05D004726 ORTHO05D005986 4.1e-297 1024.6 817 59.9
SGA_v2.0_scaffold135G34934 Striga asiatica HOM05D004726 ORTHO05D005986 4.1e-297 1024.6 805 60.2
AagrBONN_evm.TU.Sc2ySwM_344.876 Anthoceros agrestis HOM05D004726 ORTHO05D005986 7.0e-297 1023.8 854 57.5
A03p32390 Brassica napus HOM05D004726 ORTHO05D005986 9.2e-297 1023.5 776 61.2
C03p39450 Brassica napus HOM05D004726 ORTHO05D005986 9.2e-297 1023.5 801 59.7
Carub.0003s0033 Capsella rubella HOM05D004726 ORTHO05D005986 9.2e-297 1023.5 799 60.7
THA.LOC104821108 Tarenaya hassleriana HOM05D004726 ORTHO05D005986 9.2e-297 1023.5 794 61.1
SalBow2G0243 Salvia bowleyana HOM05D004726 ORTHO05D005986 1.2e-296 1023.1 695 67.6
Ah.11g044820 Amaranthus hybridus HOM05D004726 ORTHO05D005986 2.0e-296 1022.3 776 62.2
Glyma.16G063900 Glycine max HOM05D004726 ORTHO05D005986 2.7e-296 1021.9 686 68.8
AT3G01720 Arabidopsis thaliana HOM05D004726 ORTHO05D005986 3.5e-296 1021.5 794 60.6
arahy.Tifrunner.gnm1.ann1.Q8ZL0R Arachis hypogaea HOM05D004726 ORTHO05D005986 3.5e-296 1021.5 797 61.2
Psat1g083400 Pisum sativum HOM05D004726 ORTHO05D005986 3.5e-296 1021.5 774 62.1
EL10Ac2g03214 Beta vulgaris HOM05D004726 ORTHO05D005986 4.6e-296 1021.1 797 60.4
Lsat_1_v5_gn_2_93500 Lactuca sativa HOM05D004726 ORTHO05D005986 4.6e-296 1021.1 805 61.6
Nitab4.5_0004776g0030 Nicotiana tabacum HOM05D004726 ORTHO05D005986 6.0e-296 1020.8 679 67.5
BolC3t16213H Brassica oleracea HOM05D004726 ORTHO05D005986 7.8e-296 1020.4 800 59.6
Phvul.008G146800 Phaseolus vulgaris HOM05D004726 ORTHO05D005986 7.8e-296 1020.4 798 60.8
AL3G10420 Arabidopsis lyrata HOM05D004726 ORTHO05D005986 1.7e-295 1019.2 794 60.7
Lj1g0014024 Lotus japonicus HOM05D004726 ORTHO05D005986 3.9e-295 1018.1 794 61.3
PSO017G1160 Papaver somniferum HOM05D004726 ORTHO05D005986 6.6e-295 1017.3 697 66.4
Sopen05g004100 Solanum pennellii HOM05D004726 ORTHO05D005986 8.6e-295 1016.9 721 65.0
Sp3g00330 Schrenkiella parvula HOM05D004726 ORTHO05D005986 1.5e-294 1016.1 796 61.1
Solyc05g008260.3 Solanum lycopersicum HOM05D004726 ORTHO05D005986 1.5e-294 1016.1 719 64.8
PGSC0003DMG400030549 Solanum tuberosum HOM05D004726 ORTHO05D005986 2.5e-294 1015.4 692 66.8
AUR62018238 Chenopodium quinoa HOM05D004726 ORTHO05D005986 3.3e-294 1015.0 674 68.5
Psat0s1369g0120 Pisum sativum HOM05D004726 ORTHO05D005986 3.3e-294 1015.0 785 61.8
TPR.G9063 Trifolium pratense HOM05D004726 ORTHO05D005986 1.2e-293 1013.1 780 62.6
Ca_03877_v3 Cicer arietinum L. HOM05D004726 ORTHO05D005986 6.2e-293 1010.7 673 68.4
Pp3c10_20040 Physcomitrium patens HOM05D004726 ORTHO05D005986 8.0e-293 1010.4 773 61.2
Migut.G00516 Erythranthe guttata HOM05D004726 ORTHO05D005986 5.2e-292 1007.7 869 56.5
PSO386G0103 Papaver somniferum HOM05D004726 ORTHO05D005986 1.2e-291 1006.5 775 60.9
Lalb_Chr22g0360561 Lupinus albus HOM05D004726 ORTHO05D005986 8.3e-290 1000.3 673 66.1
AUR62037765 Chenopodium quinoa HOM05D004726 ORTHO05D005986 7.8e-288 993.8 778 60.4
Hund13042 Selenicereus undatus HOM05D004726 ORTHO05D005986 6.2e-285 984.2 856 56.3
ClCG05G012910 Citrullus lanatus HOM05D004726 ORTHO05D005986 1.1e-284 983.4 766 60.7
SHI03847 Sapria himalayana HOM05D004726 ORTHO05D005986 1.8e-284 982.6 676 66.9
BcaC01g04537 Brassica carinata HOM05D004726 ORTHO05D005986 4.4e-283 978.0 683 65.4
Ah.12g055330 Amaranthus hybridus HOM05D004726 ORTHO05D005986 2.2e-282 975.7 652 67.6
Medtr6g022320 Medicago truncatula HOM05D004726 ORTHO05D005986 1.3e-279 966.5 930 52.2
Rhsim05G0094900 Rhododendron simsii HOM05D004726 ORTHO05D005986 3.6e-277 958.4 673 65.8
Nn3g16582 Nelumbo nucifera HOM05D004726 ORTHO05D005986 2.2e-274 949.1 693 63.9
Actinidia36156 Actinidia chinensis HOM05D004726 ORTHO05D005986 1.9e-270 936.0 662 65.4
Glyma.19G055500 Glycine max HOM05D004726 ORTHO05D005986 2.4e-268 929.1 710 61.0
Duzib147G0777 Durio zibethinus HOM05D004726 ORTHO05D005986 1.0e-263 913.7 672 62.8
vmacro05911 Vaccinium macrocarpon HOM05D004726 ORTHO05D005986 6.6e-263 911.0 603 67.5
vmacro05915 Vaccinium macrocarpon HOM05D004726 ORTHO05D005986 6.6e-263 911.0 603 67.5
Haze_14803 Corylus avellana HOM05D004726 ORTHO05D005986 9.6e-262 907.1 774 57.2
Eucgr.J02276 Eucalyptus grandis HOM05D004726 ORTHO05D005986 1.7e-258 896.3 794 55.0
Peaxi162Scf00205g00121 Petunia axillaris HOM05D004726 ORTHO05D005986 2.8e-245 852.4 682 57.9
Oeu050441.1 Olea europaea HOM05D004726 ORTHO05D005986 1.1e-228 797.3 613 60.5
Pp3c3_33250 Physcomitrium patens HOM05D004726 ORTHO05D005986 5.1e-223 778.5 621 61.4
Oeu054664.1 Olea europaea HOM05D004726 ORTHO05D005986 2.2e-210 736.5 597 57.6
TAR374G1052 Trochodendron aralioides HOM05D004726 ORTHO05D005986 4.7e-192 675.6 569 58.2
VMungo1383G2700 Vigna mungo HOM05D004726 ORTHO05D005986 7.8e-179 631.7 451 65.2
Atru.BG.103.p Acer truncatum HOM05D004726 ORTHO05D005986 4.6e-155 552.7 386 65.0
Atru.chr3.2443 Acer truncatum HOM05D004726 ORTHO05D005986 1.1e-143 515.0 415 60.0
Atru.chr3.1245 Acer truncatum HOM05D004726 ORTHO05D005986 4.3e-137 493.0 300 73.7
CARHR075200 Cardamine hirsuta HOM05D004726 ORTHO05D005986 6.5e-133 479.2 418 55.7
TAR622G0871 Trochodendron aralioides HOM05D004726 ORTHO05D005986 1.6e-131 474.6 387 60.2
VMungo1383G3734 Vigna mungo HOM05D004726 ORTHO05D005986 1.3e-101 375.2 339 55.2
Cre12.g520450 Chlamydomonas reinhardtii HOM05D004726 ORTHO05D005986 5.7e-97 359.8 731 31.5
Gohir.D07G232450 Gossypium hirsutum HOM05D004726 ORTHO05D005986 1.4e-95 355.1 446 43.5
Gorai.001G267700 Gossypium raimondii HOM05D004726 ORTHO05D005986 1.7e-93 348.2 446 43.5
Zm00001eb144300 Zea mays HOM05D004726 ORTHO05D005986 7.0e-87 326.2 232 65.9
unitig_37.g12422 Utricularia gibba HOM05D004726 ORTHO05D005986 3.8e-77 293.9 248 51.6
PRCOL_00002880 Prasinoderma coloniale HOM05D004726 ORTHO05D005986 1.2e-73 282.3 329 43.2
Psat5g191640 Pisum sativum HOM05D004726 ORTHO05D005986 4.9e-72 276.9 164 73.2
MD04G1153000 Malus domestica HOM05D004726 ORTHO05D005986 4.1e-71 273.9 171 69.6
Zm00001eb344270 Zea mays HOM05D004726 ORTHO05D005986 4.1e-71 273.9 169 71.6
Zm00001eb350950 Zea mays HOM05D004726 ORTHO05D005986 9.2e-71 272.7 192 63.5
CBR_g52139 Chara braunii HOM05D000019 ORTHO05D000002 7.5e-65 253.1 188 58.5
PRCOL_00003197 Prasinoderma coloniale HOM05D004726 ORTHO05D005986 1.1e-58 232.6 419 34.6
Zm00001eb128230 Zea mays HOM05D004726 ORTHO05D005986 9.8e-57 226.1 124 78.2
Zm00001eb389090 Zea mays HOM05D004726 ORTHO05D005986 1.1e-55 222.6 126 75.4
Zm00001eb128240 Zea mays HOM05D004726 ORTHO05D005986 3.9e-53 214.2 148 68.9
Zm00001eb311070 Zea mays HOM05D004726 ORTHO05D005986 1.9e-52 211.8 108 83.3
MCO03G447 Micromonas commoda HOM05D004726 ORTHO05D005986 1.3e-48 199.1 338 36.4
RcHm_v2.0_Chr2g0174051 Rosa chinensis HOM05D004726 ORTHO05D005986 6.2e-27 127.1 148 43.2
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 2.0e-25 122.1 79 68.4
CAN.G1334.7 Capsicum annuum HOM05D004726 ORTHO05D005986 4.5e-25 120.9 71 74.6
TAR622G0354 Trochodendron aralioides HOM05D004726 ORTHO05D005986 1.7e-24 119.0 68 77.9
HanXRQChr17g0562941 Helianthus annuus HOM05D004726 ORTHO05D005986 1.1e-18 99.8 114 47.4
HanXRQChr13g0417601 Helianthus annuus HOM05D004726 ORTHO05D005986 1.0e-16 93.2 51 78.4
Psat1g035560 Pisum sativum HOM05D000639 ORTHO05D003485 3.8e-16 91.3 78 56.4
Psat2g089280 Pisum sativum HOM05D004726 ORTHO05D005986 3.8e-16 91.3 78 56.4
MD04G1152900 Malus domestica HOM05D004726 ORTHO05D005986 1.5e-12 79.3 51 68.6
PRCOL_00001236 Prasinoderma coloniale HOM05D001570 ORTHO05D001566 3.3e-12 78.2 294 24.5
MCO05G056 Micromonas commoda HOM05D001570 ORTHO05D001566 4.8e-11 74.3 290 24.1
PRCOL_00000161 Prasinoderma coloniale HOM05D001570 ORTHO05D001566 6.3e-11 73.9 263 25.9
Phvul.006G014000 Phaseolus vulgaris HOM05D001570 ORTHO05D001566 1.4e-10 72.8 275 23.3
Ah.10g030270 Amaranthus hybridus HOM05D001570 ORTHO05D001566 2.4e-10 72.0 222 26.6
HanXRQChr15g0481461 Helianthus annuus HOM05D001570 ORTHO05D001566 3.1e-10 71.6 299 23.1
Pp3c14_17200 Physcomitrium patens HOM05D001570 ORTHO05D001566 9.0e-10 70.1 281 23.5
THA.LOC104816926 Tarenaya hassleriana HOM05D001570 ORTHO05D001566 9.0e-10 70.1 276 24.6
VMungo0540G2325 Vigna mungo HOM05D001570 ORTHO05D001566 5.9e-09 67.4 279 24.0
vmacro17548 Vaccinium macrocarpon HOM05D004726 ORTHO05D005986 1.7e-08 65.9 36 77.8
Lalb_Chr17g0347911 Lupinus albus HOM05D001570 ORTHO05D001566 1.4e-07 62.8 219 23.3
Potri.001G275600 Populus trichocarpa HOM05D001570 ORTHO05D001566 1.4e-07 62.8 223 24.2
Glyma.20G040500 Glycine max HOM05D001570 ORTHO05D001566 1.9e-07 62.4 241 25.3
MD03G1165800 Malus domestica HOM05D001570 ORTHO05D001566 3.2e-07 61.6 218 23.9
CAN.G1285.3 Capsicum annuum HOM05D004726 ORTHO05D005986 9.3e-07 60.1 46 60.9
Glyma.07G231500 Glycine max HOM05D001570 ORTHO05D001566 1.6e-06 59.3 241 24.5


User provided reference genes

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