Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 2.7e-92 342.0 177 100.0
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 2.1e-52 209.5 178 59.6
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 3.6e-49 198.7 172 58.1
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 1.4e-48 196.8 176 56.8
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 6.8e-48 194.5 175 58.3
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 6.8e-48 194.5 171 59.1
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 1.5e-47 193.4 173 58.4
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 2.6e-47 192.6 171 57.9
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 5.8e-47 191.4 173 56.6
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 5.8e-47 191.4 170 55.9
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 7.6e-47 191.0 173 57.2
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 7.6e-47 191.0 172 55.2
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 9.9e-47 190.7 172 54.7
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 1.3e-46 190.3 175 57.7
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 1.7e-46 189.9 178 55.1
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.7e-46 189.9 169 58.6
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.7e-46 189.9 174 57.5
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 2.2e-46 189.5 176 55.7
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 2.9e-46 189.1 172 54.7
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 4.9e-46 188.3 169 58.0
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 1.4e-45 186.8 172 53.5
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 1.4e-45 186.8 170 57.1
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 2.4e-45 186.0 166 56.6
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 3.2e-45 185.7 166 59.0
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 4.2e-45 185.3 184 52.2
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 7.1e-45 184.5 165 57.0
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 9.3e-45 184.1 169 57.4
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 1.2e-44 183.7 172 55.2
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 2.1e-44 183.0 174 53.4
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 2.1e-44 183.0 169 56.8
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 2.7e-44 182.6 175 54.9
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 2.7e-44 182.6 178 55.1
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 2.7e-44 182.6 158 58.9
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 2.7e-44 182.6 166 56.0
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.6e-44 181.8 167 56.9
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 7.8e-44 181.0 169 55.6
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 1.0e-43 180.6 175 53.1
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.7e-43 179.9 167 56.3
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.7e-43 179.9 174 52.3
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 2.3e-43 179.5 169 54.4
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 2.3e-43 179.5 172 52.9
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 2.3e-43 179.5 171 56.1
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 2.3e-43 179.5 174 54.6
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.0e-43 179.1 167 56.3
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 3.0e-43 179.1 173 53.2
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 3.0e-43 179.1 176 53.4
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 3.0e-43 179.1 166 55.4
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 3.0e-43 179.1 171 54.4
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 3.9e-43 178.7 173 54.9
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 5.1e-43 178.3 186 50.5
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 5.1e-43 178.3 169 55.6
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 5.1e-43 178.3 171 56.1
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 8.7e-43 177.6 167 55.7
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 8.7e-43 177.6 170 55.9
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 1.5e-42 176.8 169 54.4
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.5e-42 176.8 175 52.0
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.9e-42 176.4 173 53.8
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 1.9e-42 176.4 172 52.3
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 1.9e-42 176.4 171 53.8
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 1.9e-42 176.4 174 52.3
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 5.6e-42 174.9 167 54.5
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 5.6e-42 174.9 167 54.5
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 5.6e-42 174.9 190 50.0
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 2.1e-41 172.9 207 45.4
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 2.8e-41 172.6 181 51.4
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 4.8e-41 171.8 155 54.8
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 8.1e-41 171.0 169 51.5
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.4e-40 170.2 171 52.0
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 1.8e-40 169.9 139 61.9
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.0e-40 168.7 175 50.9
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 6.9e-40 167.9 164 53.7
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 9.0e-40 167.5 181 50.3
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 2.6e-39 166.0 132 63.6
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 7.6e-39 164.5 133 61.7
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 7.6e-39 164.5 160 54.4
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 2.2e-38 162.9 132 63.6
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 2.9e-38 162.5 161 52.8
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.9e-37 159.8 139 61.2
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 2.4e-37 159.5 157 50.3
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 2.4e-37 159.5 169 54.4
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 7.1e-37 157.9 234 41.5
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 7.1e-37 157.9 163 50.3
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 1.2e-36 157.1 128 60.2
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 6.0e-36 154.8 122 63.1
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.3e-35 153.7 173 49.1
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 2.3e-35 152.9 185 45.4
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.1e-34 150.6 185 45.4
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.1e-34 150.6 184 46.2
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.5e-34 150.2 168 49.4
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 2.5e-34 149.4 169 46.7
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 3.3e-34 149.1 176 51.7
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 4.3e-34 148.7 186 44.6
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 9.6e-34 147.5 169 49.1
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 2.8e-33 146.0 187 44.9
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 2.8e-33 146.0 184 45.7
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 2.8e-33 146.0 106 67.9
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 6.2e-33 144.8 169 47.9
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 8.1e-33 144.4 165 48.5
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 1.8e-32 143.3 180 46.1
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 2.4e-32 142.9 164 47.0
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 2.4e-32 142.9 164 47.0
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 5.3e-32 141.7 165 46.1
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 6.9e-32 141.4 188 44.7
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 9.9e-31 137.5 188 44.1
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 8.4e-30 134.4 143 49.7
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 2.7e-28 129.4 186 41.4
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 4.6e-28 128.6 180 42.8
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 1.0e-27 127.5 180 42.2
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 9.6e-26 120.9 117 53.8
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 6.2e-25 118.2 169 40.8
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 8.1e-25 117.9 181 39.8
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 1.4e-24 117.1 139 45.3
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 4.0e-24 115.5 166 42.8
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 5.3e-24 115.2 192 37.0
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 6.9e-24 114.8 120 50.0
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 9.0e-24 114.4 115 53.0
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 2.0e-23 113.2 173 38.2
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 4.5e-23 112.1 174 38.5
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 5.8e-23 111.7 174 38.5
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.0e-22 110.9 167 39.5
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 1.3e-22 110.5 174 37.9
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.9e-22 109.4 116 51.7
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 1.1e-21 107.5 133 45.9
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 5.5e-21 105.1 193 34.7
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 9.3e-21 104.4 153 42.5
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 9.3e-21 104.4 120 45.8
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.1e-20 103.2 177 36.2
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 4.6e-20 102.1 162 35.8
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 1.8e-19 100.1 118 46.6
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 6.7e-19 98.2 163 35.6
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 5.7e-18 95.1 134 40.3
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 6.2e-17 91.7 152 36.8
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 4.1e-16 89.0 101 46.5
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 5.3e-16 88.6 121 42.1
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 5.0e-14 82.0 82 56.1
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 5.0e-14 82.0 75 53.3
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 8.4e-14 81.3 55 69.1
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 1.4e-13 80.5 76 55.3
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 2.5e-13 79.7 53 69.8
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 2.5e-13 79.7 54 70.4
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 3.2e-13 79.3 58 65.5
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 1.2e-12 77.4 159 30.8
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.0e-11 72.8 55 61.8
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 3.9e-11 72.4 157 33.8
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 1.5e-07 60.5 41 63.4
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 2.2e-06 56.6 126 33.3
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 3.8e-06 55.8 53 50.9


User provided reference genes

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