Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0178 Selaginella moellendorffii HOM05D005560 ORTHO05D006862 2.4e-50 201.8 101 100.0
Mapoly0008s0274 Marchantia polymorpha HOM05D005560 ORTHO05D006862 1.9e-31 139.0 98 66.3
PSO063G2615 Papaver somniferum HOM05D005560 ORTHO05D006862 7.4e-31 137.1 101 67.3
PSO782G0665 Papaver somniferum HOM05D005560 ORTHO05D006862 9.7e-31 136.7 101 66.3
AagrBONN_evm.TU.Sc2ySwM_362.2649 Anthoceros agrestis HOM05D005560 ORTHO05D006862 1.2e-28 129.8 98 65.3
Lalb_Chr20g0120691 Lupinus albus HOM05D005560 ORTHO05D006862 1.2e-28 129.8 99 61.6
Lj6E694T0 Lonicera japonica HOM05D005560 ORTHO05D006862 1.5e-28 129.4 101 61.4
Lalb_Chr18g0058561 Lupinus albus HOM05D005560 ORTHO05D006862 1.5e-28 129.4 99 61.6
MSTRG.3846 Avicennia marina HOM05D005560 ORTHO05D006862 2.0e-28 129.0 96 63.5
CDE06G0356 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 2.6e-28 128.6 101 60.4
Potri.008G102200 Populus trichocarpa HOM05D005560 ORTHO05D006862 2.6e-28 128.6 101 60.4
THA.LOC104827102 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 3.4e-28 128.3 101 65.3
Gohir.A10G174500 Gossypium hirsutum HOM05D005560 ORTHO05D006862 5.9e-28 127.5 101 59.4
Cc06_g13180 Coffea canephora HOM05D005560 ORTHO05D006862 7.7e-28 127.1 101 58.4
Glyma.15G138200 Glycine max HOM05D005560 ORTHO05D006862 1.0e-27 126.7 99 60.6
MD16G1149600 Malus domestica HOM05D005560 ORTHO05D006862 1.0e-27 126.7 101 59.4
Thhalv10005160m.g Eutrema salsugineum HOM05D005560 ORTHO05D006862 1.3e-27 126.3 101 60.4
A06p38280 Brassica napus HOM05D005560 ORTHO05D006862 1.7e-27 125.9 101 61.4
Ca_00962_v3 Cicer arietinum L. HOM05D005560 ORTHO05D006862 1.7e-27 125.9 99 60.6
Nn3g21792 Nelumbo nucifera HOM05D005560 ORTHO05D006862 1.7e-27 125.9 101 58.4
SEGI_13216 Sequoiadendron giganteum HOM05D005560 ORTHO05D006862 1.7e-27 125.9 98 60.2
VMungo0540G1255 Vigna mungo HOM05D005560 ORTHO05D006862 1.7e-27 125.9 99 60.6
Lj6g0013029 Lotus japonicus HOM05D005560 ORTHO05D006862 2.2e-27 125.6 99 59.6
MD13G1149300 Malus domestica HOM05D005560 ORTHO05D006862 2.2e-27 125.6 101 57.4
Phvul.006G120000 Phaseolus vulgaris HOM05D005560 ORTHO05D006862 2.2e-27 125.6 99 60.6
Prupe.1G113300 Prunus persica HOM05D005560 ORTHO05D006862 2.2e-27 125.6 97 59.8
Sp2g19850 Schrenkiella parvula HOM05D005560 ORTHO05D006862 2.2e-27 125.6 101 60.4
Manes.11G109500 Manihot esculenta HOM05D005560 ORTHO05D006862 2.9e-27 125.2 101 56.4
TWI09G0868 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 2.9e-27 125.2 96 58.3
AT5G49540 Arabidopsis thaliana HOM05D005560 ORTHO05D006862 3.8e-27 124.8 101 59.4
Manes.11G060400 Manihot esculenta HOM05D005560 ORTHO05D006862 3.8e-27 124.8 101 56.4
AL8G23330 Arabidopsis lyrata HOM05D005560 ORTHO05D006862 5.0e-27 124.4 101 59.4
BcaB04g19617 Brassica carinata HOM05D005560 ORTHO05D006862 6.5e-27 124.0 101 59.4
BcaC04g23733 Brassica carinata HOM05D005560 ORTHO05D006862 6.5e-27 124.0 101 59.4
A09p04870 Brassica napus HOM05D005560 ORTHO05D006862 6.5e-27 124.0 101 59.4
C09p05260 Brassica napus HOM05D005560 ORTHO05D006862 6.5e-27 124.0 101 59.4
BolC9t53453H Brassica oleracea HOM05D005560 ORTHO05D006862 6.5e-27 124.0 101 59.4
CARHR287970 Cardamine hirsuta HOM05D005560 ORTHO05D006862 6.5e-27 124.0 101 58.4
CsaV3_1G038810 Cucumis sativus L. HOM05D005560 ORTHO05D006862 6.5e-27 124.0 96 63.5
Dinv44258 Davidia involucrata HOM05D005560 ORTHO05D006862 6.5e-27 124.0 95 58.9
Glyma.17G036700 Glycine max HOM05D005560 ORTHO05D006862 6.5e-27 124.0 101 59.4
Medtr2g097970 Medicago truncatula HOM05D005560 ORTHO05D006862 6.5e-27 124.0 99 59.6
Sed0008051 Sechium edule HOM05D005560 ORTHO05D006862 6.5e-27 124.0 96 62.5
FAN12G4019 Fragaria x ananassa HOM05D005560 ORTHO05D006862 8.5e-27 123.6 101 56.4
Sc13g0007210 Simmondsia chinensis HOM05D005560 ORTHO05D006862 8.5e-27 123.6 96 58.3
TPR.G30159 Trifolium pratense HOM05D005560 ORTHO05D006862 8.5e-27 123.6 99 59.6
TPR.G33875 Trifolium pratense HOM05D005560 ORTHO05D006862 8.5e-27 123.6 99 59.6
Dinv15139 Davidia involucrata HOM05D005560 ORTHO05D006862 1.1e-26 123.2 101 56.4
Carub.0008s0942 Capsella rubella HOM05D005560 ORTHO05D006862 1.4e-26 122.9 101 58.4
Migut.G00039 Erythranthe guttata HOM05D005560 ORTHO05D006862 1.4e-26 122.9 96 59.4
Medtr2g033590 Medicago truncatula HOM05D005560 ORTHO05D006862 1.4e-26 122.9 99 58.6
FvH4_4g20620 Fragaria vesca HOM05D005560 ORTHO05D006862 1.9e-26 122.5 96 58.3
CAN.G938.2 Capsicum annuum HOM05D005560 ORTHO05D006862 2.5e-26 122.1 101 55.4
FAN07G2916 Fragaria x ananassa HOM05D005560 ORTHO05D006862 3.2e-26 121.7 101 55.4
HanXRQChr01g0022341 Helianthus annuus HOM05D005560 ORTHO05D006862 3.2e-26 121.7 96 58.3
AagrBONN_evm.TU.Sc2ySwM_340.65 Anthoceros agrestis HOM05D005560 ORTHO05D006862 4.2e-26 121.3 92 65.2
Nitab4.5_0012592g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 4.2e-26 121.3 101 56.4
RcHm_v2.0_Chr4g0425981 Rosa chinensis HOM05D005560 ORTHO05D006862 4.2e-26 121.3 101 56.4
Solyc01g058280.4 Solanum lycopersicum HOM05D005560 ORTHO05D006862 4.2e-26 121.3 101 56.4
Sopen01g023770 Solanum pennellii HOM05D005560 ORTHO05D006862 4.2e-26 121.3 101 56.4
Zm00001eb343110 Zea mays HOM05D005560 ORTHO05D006862 4.2e-26 121.3 97 57.7
vmacro09713 Vaccinium macrocarpon HOM05D005560 ORTHO05D006862 1.2e-25 119.8 96 58.3
Cpa.g.sc9.16 Carica papaya HOM05D005560 ORTHO05D006862 1.6e-25 119.4 101 56.4
Oeu048287.1 Olea europaea HOM05D005560 ORTHO05D006862 2.7e-25 118.6 95 57.9
CBR_g22909 Chara braunii HOM05D005560 ORTHO05D006862 3.6e-25 118.2 94 58.5
Gohir.D10G181000 Gossypium hirsutum HOM05D005560 ORTHO05D006862 3.6e-25 118.2 101 56.4
GSVIVG01034955001 Vitis vinifera HOM05D001281 ORTHO05D001139 3.6e-25 118.2 101 57.4
Atru.chr4.3063 Acer truncatum HOM05D005560 ORTHO05D006862 4.6e-25 117.9 101 54.5
BolC7t44528H Brassica oleracea HOM05D005560 ORTHO05D006862 4.6e-25 117.9 97 57.7
CiPaw.02G072600 Carya illinoinensis HOM05D005560 ORTHO05D006862 4.6e-25 117.9 101 56.4
Duzib212G0918 Durio zibethinus HOM05D005560 ORTHO05D006862 4.6e-25 117.9 101 55.4
ECA246G4816 Erigeron canadensis HOM05D005560 ORTHO05D006862 4.6e-25 117.9 96 57.3
Peaxi162Scf00228g00733 Petunia axillaris HOM05D005560 ORTHO05D006862 6.1e-25 117.5 101 53.5
Zm00001eb295100 Zea mays HOM05D005560 ORTHO05D006862 6.1e-25 117.5 97 55.7
Potri.010G148600 Populus trichocarpa HOM05D005560 ORTHO05D006862 1.0e-24 116.7 101 56.4
THA.LOC104818873 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 1.0e-24 116.7 96 62.5
Aa31LG11G8340 Aethionema arabicum HOM05D005560 ORTHO05D006862 1.4e-24 116.3 92 64.1
CANSAT78G0499 Cannabis sativa HOM05D005560 ORTHO05D006862 1.4e-24 116.3 101 53.5
Aqoxy5G02923 Aquilegia oxysepala HOM05D005560 ORTHO05D006862 2.3e-24 115.5 88 63.6
CiPaw.01G134900 Carya illinoinensis HOM05D005560 ORTHO05D006862 2.3e-24 115.5 96 58.3
CSS0010593 Camellia sinensis var. sinensis HOM05D005560 ORTHO05D006862 3.0e-24 115.2 92 56.5
Gohir.A02G055900 Gossypium hirsutum HOM05D005560 ORTHO05D006862 3.0e-24 115.2 101 54.5
Gohir.D02G061100 Gossypium hirsutum HOM05D005560 ORTHO05D006862 3.0e-24 115.2 101 54.5
TAR371G1140 Trochodendron aralioides HOM05D005560 ORTHO05D006862 3.0e-24 115.2 87 60.9
arahy.Tifrunner.gnm1.ann1.JWH7Q7 Arachis hypogaea HOM05D005560 ORTHO05D006862 3.9e-24 114.8 90 58.9
COL.COLO4_34571 Corchorus olitorius HOM05D005560 ORTHO05D006862 3.9e-24 114.8 92 57.6
unitig_37.g12416 Utricularia gibba HOM05D005560 ORTHO05D007484 3.9e-24 114.8 98 56.1
CDE07G1301 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 5.1e-24 114.4 88 61.4
CAN.G484.71 Capsicum annuum HOM05D005560 ORTHO05D006862 6.7e-24 114.0 96 57.3
Ah.13g071490 Amaranthus hybridus HOM05D005560 ORTHO05D006862 8.8e-24 113.6 88 59.1
Sabra10G0114700 Salix brachista HOM05D005560 ORTHO05D006862 8.8e-24 113.6 100 53.0
Ciclev10006078m.g Citrus clementina HOM05D005560 ORTHO05D006862 1.5e-23 112.8 92 56.5
Gorai.011G202500 Gossypium raimondii HOM05D005560 ORTHO05D006862 2.0e-23 112.5 101 54.5
EL10Ac3g05546 Beta vulgaris HOM05D005560 ORTHO05D006862 2.5e-23 112.1 92 54.3
QL06p012974 Quercus lobata HOM05D005560 ORTHO05D006862 3.3e-23 111.7 87 60.9
BraA09t36124Z Brassica rapa HOM05D005560 ORTHO05D006862 4.3e-23 111.3 97 55.7
SGA_v2.0_scaffold157G37338 Striga asiatica HOM05D005560 ORTHO05D006862 1.3e-22 109.8 89 56.2
HPP92_015326 Vanilla planifolia HOM05D005560 ORTHO05D006862 1.3e-22 109.8 88 58.0
PGR004G2070 Punica granatum HOM05D005560 ORTHO05D006862 2.8e-22 108.6 96 53.1
MELO3C015305.2 Cucumis melo HOM05D005560 ORTHO05D006862 6.3e-22 107.5 87 59.8
CAN.G1860.1 Capsicum annuum HOM05D005560 ORTHO05D006862 1.1e-21 106.7 95 51.6
HanXRQChr10g0310551 Helianthus annuus HOM05D005560 ORTHO05D006862 1.1e-21 106.7 88 56.8
PGSC0003DMG401029058 Solanum tuberosum HOM05D005560 ORTHO05D006862 1.1e-21 106.7 95 51.6
ATR0598G271 Amborella trichopoda HOM05D005560 ORTHO05D006862 9.1e-21 103.6 85 58.8
AUR62016242 Chenopodium quinoa HOM05D005560 ORTHO05D006862 1.2e-20 103.2 81 58.0
Glyma.09G033400 Glycine max HOM05D005560 ORTHO05D006862 4.5e-20 101.3 93 54.8
Gorai.005G068700 Gossypium raimondii HOM05D005560 ORTHO05D006862 4.5e-20 101.3 126 43.7
TWI53G0383 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 4.5e-20 101.3 80 55.0
arahy.Tifrunner.gnm1.ann1.K4HITJ Arachis hypogaea HOM05D005560 ORTHO05D006862 7.7e-20 100.5 83 55.4
Psat0s5068g0040 Pisum sativum HOM05D005560 ORTHO05D006862 1.0e-19 100.1 83 55.4
DCAR_026978 Daucus carota HOM05D005560 ORTHO05D006862 2.2e-19 99.0 85 54.1
Nn8g38759 Nelumbo nucifera HOM05D005560 ORTHO05D006862 2.9e-19 98.6 89 52.8
ClCG03G017390 Citrullus lanatus HOM05D005560 ORTHO05D006862 3.8e-19 98.2 80 56.2
Sed0013449 Sechium edule HOM05D005560 ORTHO05D006862 3.8e-19 98.2 80 57.5
MBI10_g06741_MAGBIO Magnolia biondii HOM05D005560 ORTHO05D006862 8.5e-19 97.1 80 52.5
Hund11992 Selenicereus undatus HOM05D005560 ORTHO05D006862 8.5e-19 97.1 85 51.8
Haze_01347 Corylus avellana HOM05D005560 ORTHO05D006862 1.4e-18 96.3 85 54.1
Migut.O00585 Erythranthe guttata HOM05D005560 ORTHO05D006862 1.4e-18 96.3 84 53.6
BraA06t26743Z Brassica rapa HOM05D005560 ORTHO05D006862 2.5e-18 95.5 90 53.3
Nitab4.5_0002561g0080 Nicotiana tabacum HOM05D005560 ORTHO05D006862 4.2e-18 94.7 85 50.6
Hma1.2p1_1400F.1_g280950 Hydrangea macrophylla HOM05D005560 ORTHO05D006862 9.4e-18 93.6 85 50.6
QL02p001630 Quercus lobata HOM05D005560 ORTHO05D006862 9.4e-18 93.6 84 52.4
Eucgr.F02752 Eucalyptus grandis HOM05D005560 ORTHO05D006862 2.7e-17 92.0 103 45.6
Lsat_1_v5_gn_6_116081 Lactuca sativa HOM05D005560 ORTHO05D006862 1.0e-16 90.1 80 50.0
SalBow8G4800 Salvia bowleyana HOM05D005560 ORTHO05D006862 1.0e-16 90.1 100 48.0
Thecc.04G305600 Theobroma cacao HOM05D005560 ORTHO05D006862 2.3e-16 89.0 91 48.4
Lsat_1_v5_gn_3_139661 Lactuca sativa HOM05D005560 ORTHO05D006862 5.1e-16 87.8 78 50.0
AUR62032779 Chenopodium quinoa HOM05D005560 ORTHO05D006862 2.2e-14 82.4 70 60.0
PRCOL_00001634 Prasinoderma coloniale HOM05D005560 ORTHO05D006862 3.5e-12 75.1 93 44.1
Oeu052158.1 Olea europaea HOM05D005560 ORTHO05D006862 7.7e-12 73.9 87 44.8
Nitab4.5_0008521g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 2.2e-11 72.4 67 50.7
arahy.Tifrunner.gnm1.ann1.CCFX3U Arachis hypogaea HOM05D001281 ORTHO05D001139 5.0e-11 71.2 91 47.3
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 5.0e-11 71.2 66 50.0
Nn8g41304 Nelumbo nucifera HOM05D005560 ORTHO05D006862 1.9e-10 69.3 59 55.9
MCO06G009 Micromonas commoda HOM05D005560 ORTHO05D006862 4.7e-09 64.7 99 36.4
Cre14.g614250 Chlamydomonas reinhardtii HOM05D005560 ORTHO05D006862 8.8e-08 60.5 91 31.9


User provided reference genes

Program Settings