Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0175 Selaginella moellendorffii HOM05D006517 ORTHO05D007886 2.4e-162 575.5 303 100.0
Potri.018G047000 Populus trichocarpa HOM05D006517 ORTHO05D007886 2.8e-65 253.1 302 46.7
CAN.G55.2 Capsicum annuum HOM05D006517 ORTHO05D007886 1.4e-64 250.8 296 47.0
Ca_21351_v3 Cicer arietinum L. HOM05D006517 ORTHO05D007886 3.1e-64 249.6 302 43.4
Phvul.003G125800 Phaseolus vulgaris HOM05D006517 ORTHO05D007886 2.6e-63 246.5 299 44.8
Lj4g0027818 Lotus japonicus HOM05D006517 ORTHO05D007886 7.6e-63 245.0 297 45.8
CSS0016512 Camellia sinensis var. sinensis HOM05D006517 ORTHO05D007886 9.9e-63 244.6 312 46.5
Glyma.13G116000 Glycine max HOM05D006517 ORTHO05D007886 9.9e-63 244.6 295 44.7
Oeu000272.2 Olea europaea HOM05D006517 ORTHO05D007886 9.9e-63 244.6 308 45.1
PGR124G0001 Punica granatum HOM05D006517 ORTHO05D007886 9.9e-63 244.6 301 45.2
PGR142G0057 Punica granatum HOM05D006517 ORTHO05D007886 9.9e-63 244.6 301 45.2
Glyma.17G043800 Glycine max HOM05D006517 ORTHO05D007886 1.3e-62 244.2 302 46.0
Nitab4.5_0000987g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 1.3e-62 244.2 300 45.3
Potri.006G217100 Populus trichocarpa HOM05D006517 ORTHO05D007886 1.3e-62 244.2 302 50.7
Mapoly0086s0040 Marchantia polymorpha HOM05D006517 ORTHO05D007886 3.8e-62 242.7 305 44.9
ATR0006G021 Amborella trichopoda HOM05D006517 ORTHO05D007886 6.4e-62 241.9 299 44.1
Atru.chr7.1806 Acer truncatum HOM05D006517 ORTHO05D007886 8.4e-62 241.5 299 45.8
Medtr4g124370 Medicago truncatula HOM05D006517 ORTHO05D007886 8.4e-62 241.5 300 43.7
THA.LOC104804445 Tarenaya hassleriana HOM05D006517 ORTHO05D007886 1.9e-61 240.4 297 45.1
Duzib168G1027 Durio zibethinus HOM05D006517 ORTHO05D007886 2.4e-61 240.0 302 44.4
Manes.03G055100 Manihot esculenta HOM05D006517 ORTHO05D007886 3.2e-61 239.6 296 44.6
RcHm_v2.0_Chr2g0096541 Rosa chinensis HOM05D006517 ORTHO05D007886 3.2e-61 239.6 294 44.9
Lalb_Chr13g0299091 Lupinus albus HOM05D006517 ORTHO05D007886 5.4e-61 238.8 309 44.3
CiPaw.03G198900 Carya illinoinensis HOM05D006517 ORTHO05D007886 1.6e-60 237.3 310 44.5
Eucgr.C00754 Eucalyptus grandis HOM05D006517 ORTHO05D007886 1.6e-60 237.3 301 45.5
Thecc.09G067300 Theobroma cacao HOM05D006517 ORTHO05D007886 1.6e-60 237.3 304 44.1
Cfa010680 Carpinus fangiana HOM05D006517 ORTHO05D007886 2.7e-60 236.5 305 43.9
Lsat_1_v5_gn_8_118080 Lactuca sativa HOM05D006517 ORTHO05D007886 2.7e-60 236.5 295 44.1
COL.COLO4_21178 Corchorus olitorius HOM05D006517 ORTHO05D007886 7.8e-60 235.0 311 44.4
GSVIVG01000273001 Vitis vinifera HOM05D006517 ORTHO05D007886 1.0e-59 234.6 300 44.3
TPR.G12541 Trifolium pratense HOM05D006517 ORTHO05D007886 1.3e-59 234.2 297 42.8
Nitab4.5_0005239g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 2.3e-59 233.4 294 48.6
QL11p003516 Quercus lobata HOM05D006517 ORTHO05D007886 2.3e-59 233.4 313 44.7
Dinv42443 Davidia involucrata HOM05D006517 ORTHO05D007886 6.6e-59 231.9 304 44.4
CANSAT56G3804 Cannabis sativa HOM05D006517 ORTHO05D007886 8.7e-59 231.5 295 50.8
Migut.J00866 Erythranthe guttata HOM05D006517 ORTHO05D007886 1.1e-58 231.1 297 46.1
SGA_v2.0_scaffold318G48507 Striga asiatica HOM05D006517 ORTHO05D007886 1.1e-58 231.1 301 44.5
PSO675G5415 Papaver somniferum HOM05D006517 ORTHO05D007886 1.5e-58 230.7 297 44.8
PSO541G2149 Papaver somniferum HOM05D006517 ORTHO05D007886 4.3e-58 229.2 297 44.4
TAR383G1010 Trochodendron aralioides HOM05D006517 ORTHO05D007886 7.3e-58 228.4 303 43.6
unitig_26.g9120 Utricularia gibba HOM05D006517 ORTHO05D007886 7.3e-58 228.4 303 44.6
Sc18g0002960 Simmondsia chinensis HOM05D006517 ORTHO05D007886 9.6e-58 228.0 298 43.6
Prupe.7G189300 Prunus persica HOM05D006517 ORTHO05D007886 1.2e-57 227.6 303 42.6
AUR62025324 Chenopodium quinoa HOM05D006517 ORTHO05D007886 1.6e-57 227.3 299 44.5
Ciclev10009053m.g Citrus clementina HOM05D006517 ORTHO05D007886 1.6e-57 227.3 297 48.8
Duzib150G1397 Durio zibethinus HOM05D006517 ORTHO05D007886 1.6e-57 227.3 301 44.9
ClCG03G014700 Citrullus lanatus HOM05D006517 ORTHO05D007886 2.1e-57 226.9 301 44.5
HanXRQChr09g0258421 Helianthus annuus HOM05D006517 ORTHO05D007886 2.8e-57 226.5 303 43.6
CDE05G1274 Ceratophyllum demersum HOM05D006517 ORTHO05D007886 6.2e-57 225.3 296 43.9
Sed0014627 Sechium edule HOM05D006517 ORTHO05D007886 8.1e-57 224.9 300 44.3
CsaV3_1G041470 Cucumis sativus L. HOM05D006517 ORTHO05D007886 1.1e-56 224.6 297 44.1
Gohir.D08G268100 Gossypium hirsutum HOM05D006517 ORTHO05D007886 1.4e-56 224.2 296 42.6
Gorai.004G285800 Gossypium raimondii HOM05D006517 ORTHO05D007886 1.4e-56 224.2 296 42.6
CANSAT56G0784 Cannabis sativa HOM05D006517 ORTHO05D007886 1.8e-56 223.8 295 49.8
arahy.Tifrunner.gnm1.ann1.2S6U7G Arachis hypogaea HOM05D006517 ORTHO05D007886 9.0e-56 221.5 281 43.4
FAN23G1398 Fragaria x ananassa HOM05D006517 ORTHO05D007886 1.5e-55 220.7 298 47.3
Gohir.A08G246900 Gossypium hirsutum HOM05D006517 ORTHO05D007886 3.4e-55 219.5 294 42.5
EL10Ac8g18944 Beta vulgaris HOM05D006517 ORTHO05D007886 9.9e-55 218.0 299 43.5
MD15G1225700 Malus domestica HOM05D006517 ORTHO05D007886 9.9e-55 218.0 294 46.9
Aqoxy7G00916 Aquilegia oxysepala HOM05D006517 ORTHO05D007886 1.3e-54 217.6 307 48.9
Hund08920 Selenicereus undatus HOM05D006517 ORTHO05D007886 4.9e-54 215.7 298 41.3
FvH4_1g09680 Fragaria vesca HOM05D006517 ORTHO05D007886 4.2e-53 212.6 298 46.6
FAN26G1998 Fragaria x ananassa HOM05D006517 ORTHO05D007886 4.2e-53 212.6 298 46.6
Sabra06G0167400 Salix brachista HOM05D006517 ORTHO05D007886 9.3e-53 211.5 317 40.7
ECA232G0292 Erigeron canadensis HOM05D001622 ORTHO05D002989 1.6e-52 210.7 279 43.0
Os07g0618600 Oryza sativa ssp. japonica HOM05D006517 ORTHO05D007886 1.6e-52 210.7 311 46.6
VMungo1215G1783 Vigna mungo HOM05D006517 ORTHO05D007886 3.0e-51 206.5 305 46.2
MBI13_g05966_MAGBIO Magnolia biondii HOM05D006517 ORTHO05D007886 3.9e-51 206.1 310 45.8
Zm00001eb327610 Zea mays HOM05D006517 ORTHO05D007886 1.5e-50 204.1 311 38.9
MELO3C015558.2 Cucumis melo HOM05D006517 ORTHO05D007886 3.3e-50 203.0 301 46.2
MD02G1105800 Malus domestica HOM05D006517 ORTHO05D007886 5.8e-47 192.2 294 44.6
arahy.Tifrunner.gnm1.ann1.0410DC Arachis hypogaea HOM05D006517 ORTHO05D007886 1.3e-46 191.0 254 41.7
AUR62028338 Chenopodium quinoa HOM05D000417 ORTHO05D007886 1.7e-46 190.7 297 41.1
Pp3c18_11010 Physcomitrium patens HOM05D006517 ORTHO05D007886 1.1e-45 188.0 307 42.0
Oeu000950.1 Olea europaea HOM05D006517 ORTHO05D007886 7.1e-45 185.3 262 41.2
Actinidia39601 Actinidia chinensis HOM05D006517 ORTHO05D007886 9.3e-45 184.9 252 44.0
CBR_g36802 Chara braunii HOM05D006517 ORTHO05D007886 2.7e-44 183.3 288 37.8
Psat4g020160 Pisum sativum HOM05D006517 ORTHO05D007886 2.7e-44 183.3 260 41.5
FAN26G3113 Fragaria x ananassa HOM05D006517 ORTHO05D007886 1.1e-42 177.9 298 43.0
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 1.1e-42 177.9 254 42.1
SGA_v2.0_scaffold31G12706 Striga asiatica HOM05D006517 ORTHO05D007886 1.6e-41 174.1 260 43.1
Duzib187G0844 Durio zibethinus HOM05D006517 ORTHO05D007886 3.7e-41 172.9 300 36.7
Actinidia39602 Actinidia chinensis HOM05D006517 ORTHO05D007886 4.8e-41 172.6 253 42.3
Nn8g38504 Nelumbo nucifera HOM05D006517 ORTHO05D007886 1.1e-40 171.4 294 36.1
AagrBONN_evm.TU.Sc2ySwM_362.2898 Anthoceros agrestis HOM05D006517 ORTHO05D007886 9.0e-40 168.3 234 42.7
SalBow6G1494 Salvia bowleyana HOM05D006517 ORTHO05D007886 1.1e-37 161.4 271 39.5
HPP92_002241 Vanilla planifolia HOM05D000872 ORTHO05D000777 3.5e-36 156.4 249 44.6
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 7.9e-36 155.2 270 36.3
Cc09_g04390 Coffea canephora HOM05D006517 ORTHO05D007886 6.9e-32 142.1 147 49.7
BraA04t17607Z Brassica rapa HOM05D006517 ORTHO05D007886 2.0e-31 140.6 167 45.5
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 4.5e-31 139.4 172 45.3
A04p20280 Brassica napus HOM05D006517 ORTHO05D007886 4.5e-31 139.4 167 45.5
C04p55990 Brassica napus HOM05D006517 ORTHO05D007886 4.5e-31 139.4 167 44.9
BolC4t27132H Brassica oleracea HOM05D006517 ORTHO05D007886 4.5e-31 139.4 167 44.9
Sp4g06310 Schrenkiella parvula HOM05D006517 ORTHO05D007886 5.8e-31 139.0 172 44.8
Carub.0004s0605 Capsella rubella HOM05D006517 ORTHO05D007886 1.3e-30 137.9 177 42.9
AT2G26210 Arabidopsis thaliana HOM05D006517 ORTHO05D007886 1.7e-30 137.5 177 44.6
AL4G18760 Arabidopsis lyrata HOM05D006517 ORTHO05D007886 2.9e-30 136.7 177 44.6
Aa31LG5G9580 Aethionema arabicum HOM05D006517 ORTHO05D007886 6.5e-30 135.6 219 38.4
FAN23G2301 Fragaria x ananassa HOM05D006517 ORTHO05D007886 6.5e-30 135.6 298 38.3
FAN28G2617 Fragaria x ananassa HOM05D006517 ORTHO05D007886 6.5e-30 135.6 312 33.7
Solyc06g031680.2 Solanum lycopersicum HOM05D006517 ORTHO05D007886 2.5e-29 133.7 138 48.6
CARHR115040 Cardamine hirsuta HOM05D006517 ORTHO05D007886 3.2e-29 133.3 172 44.8
Sopen06g010170 Solanum pennellii HOM05D006517 ORTHO05D007886 2.7e-28 130.2 138 47.8
SEGI_24061 Sequoiadendron giganteum HOM05D006517 ORTHO05D007886 3.5e-28 129.8 154 43.5
Solyc06g031690.4 Solanum lycopersicum HOM05D006517 ORTHO05D007886 1.0e-27 128.3 92 66.3
DCAR_010521 Daucus carota HOM05D006517 ORTHO05D007886 8.7e-27 125.2 310 31.3
Cpa.g.sc82.30 Carica papaya HOM05D006517 ORTHO05D007886 1.1e-26 124.8 109 56.9
BcaNung07167 Brassica carinata HOM05D006517 ORTHO05D007886 5.7e-26 122.5 170 41.8
Cc09_g04380 Coffea canephora HOM05D006517 ORTHO05D007886 2.8e-25 120.2 92 63.0
Cpa.g.sc82.25 Carica papaya HOM05D006517 ORTHO05D007886 9.0e-24 115.2 60 76.7
Rhsim05G0081000 Rhododendron simsii HOM05D006517 ORTHO05D007886 1.2e-23 114.8 270 33.0
FAN19G3155 Fragaria x ananassa HOM05D006517 ORTHO05D007886 5.9e-15 85.9 89 52.8
Thhalv10002200m.g Eutrema salsugineum HOM05D006517 ORTHO05D007886 2.9e-14 83.6 176 41.5
vmacro13145 Vaccinium macrocarpon HOM05D006517 ORTHO05D007886 3.2e-13 80.1 223 31.4
Peaxi162Scf00658g00031 Petunia axillaris HOM05D000115 ORTHO05D000464 1.7e-09 67.8 43 72.1
Medtr4g036440 Medicago truncatula HOM05D006517 ORTHO05D007886 4.1e-08 63.2 75 46.7
Medtr5g081760 Medicago truncatula HOM05D006517 ORTHO05D007886 1.5e-07 61.2 81 43.2
CDE05G2100 Ceratophyllum demersum HOM05D003211 ORTHO05D003621 1.7e-06 57.8 55 45.5
Dinv40121 Davidia involucrata HOM05D003211 ORTHO05D003621 2.9e-06 57.0 91 30.8
Glyma.06G023000 Glycine max HOM05D003211 ORTHO05D003621 2.9e-06 57.0 89 34.8
CSS0050063 Camellia sinensis var. sinensis HOM05D003211 ORTHO05D003621 5.0e-06 56.2 148 28.4
Gohir.A02G083400 Gossypium hirsutum HOM05D003211 ORTHO05D003621 5.0e-06 56.2 85 30.6
Gohir.D02G098700 Gossypium hirsutum HOM05D003211 ORTHO05D003621 5.0e-06 56.2 85 30.6
Gorai.005G112600 Gossypium raimondii HOM05D003211 ORTHO05D003621 5.0e-06 56.2 85 30.6
Lalb_Chr09g0327171 Lupinus albus HOM05D005126 ORTHO05D006169 5.0e-06 56.2 104 29.8
vmacro18428 Vaccinium macrocarpon HOM05D003211 ORTHO05D003621 5.0e-06 56.2 55 45.5
CDE05G2134 Ceratophyllum demersum HOM05D003211 ORTHO05D003621 6.5e-06 55.8 55 43.6
MBI05_g22093_MAGBIO Magnolia biondii HOM05D003211 ORTHO05D003621 6.5e-06 55.8 55 43.6
SEGI_01879 Sequoiadendron giganteum HOM05D003211 ORTHO05D003621 6.5e-06 55.8 64 40.6
arahy.Tifrunner.gnm1.ann1.WVQ74Q Arachis hypogaea HOM05D003211 ORTHO05D003621 8.5e-06 55.5 55 43.6
arahy.Tifrunner.gnm1.ann1.YJZ5EZ Arachis hypogaea HOM05D003211 ORTHO05D003621 8.5e-06 55.5 55 43.6
Lsat_1_v5_gn_5_30201 Lactuca sativa HOM05D006517 ORTHO05D007886 8.5e-06 55.5 99 32.3
Lalb_Chr19g0131471 Lupinus albus HOM05D003211 ORTHO05D003621 8.5e-06 55.5 55 43.6
Medtr8g098885 Medicago truncatula HOM05D006517 ORTHO05D007886 8.5e-06 55.5 49 55.1
TAR381G1330 Trochodendron aralioides HOM05D003211 ORTHO05D003621 8.5e-06 55.5 150 26.0
HPP92_002479 Vanilla planifolia HOM05D003211 ORTHO05D003621 8.5e-06 55.5 55 45.5


User provided reference genes

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