Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0168 Selaginella moellendorffii HOM05D004676 ORTHO05D005661 3.0e-79 299.3 266 100.0
Mapoly0006s0051 Marchantia polymorpha HOM05D004676 ORTHO05D005661 5.1e-39 165.6 172 62.8
SEGI_40255 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 6.3e-37 158.7 187 54.0
unitig_747.g22032 Utricularia gibba HOM05D004676 ORTHO05D005661 8.2e-37 158.3 172 59.3
Rhsim01G0227600 Rhododendron simsii HOM05D004676 ORTHO05D005661 1.4e-36 157.5 113 71.7
unitig_0.g1557 Utricularia gibba HOM05D004676 ORTHO05D005661 1.4e-36 157.5 172 60.5
vmacro05212 Vaccinium macrocarpon HOM05D004676 ORTHO05D005661 1.4e-36 157.5 113 71.7
Potri.001G148000 Populus trichocarpa HOM05D004676 ORTHO05D005661 1.8e-36 157.1 128 66.4
Thecc.09G321600 Theobroma cacao HOM05D004676 ORTHO05D005661 1.8e-36 157.1 140 61.4
MBI14_g16284_MAGBIO Magnolia biondii HOM05D004676 ORTHO05D005661 2.4e-36 156.8 114 71.1
Migut.L00698 Erythranthe guttata HOM05D004676 ORTHO05D005661 3.1e-36 156.4 132 62.9
CDE04G1893 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 5.3e-36 155.6 115 66.1
Sabra01G0116300 Salix brachista HOM05D004676 ORTHO05D005661 5.3e-36 155.6 128 64.8
Sabra01G0117800 Salix brachista HOM05D004676 ORTHO05D005661 5.3e-36 155.6 128 64.8
TWI75G1679 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 5.3e-36 155.6 112 69.6
Lj1P153T22 Lonicera japonica HOM05D004676 ORTHO05D005661 9.0e-36 154.8 112 71.4
Sc21g0005490 Simmondsia chinensis HOM05D004676 ORTHO05D005661 9.0e-36 154.8 171 59.6
PGR119G2251 Punica granatum HOM05D004676 ORTHO05D005661 1.2e-35 154.5 113 70.8
Migut.D02100 Erythranthe guttata HOM05D004676 ORTHO05D005661 1.5e-35 154.1 174 60.3
Nitab4.5_0001424g0070 Nicotiana tabacum HOM05D004676 ORTHO05D005661 1.5e-35 154.1 125 63.2
Nitab4.5_0005880g0060 Nicotiana tabacum HOM05D004676 ORTHO05D005661 1.5e-35 154.1 125 63.2
TWI79G0464 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 1.5e-35 154.1 112 68.8
Gohir.A07G098600 Gossypium hirsutum HOM05D004676 ORTHO05D005661 2.0e-35 153.7 141 61.7
Gohir.D07G102900 Gossypium hirsutum HOM05D004676 ORTHO05D005661 2.0e-35 153.7 141 61.7
Gorai.001G110800 Gossypium raimondii HOM05D004676 ORTHO05D005661 2.0e-35 153.7 141 61.7
MD11G1108100 Malus domestica HOM05D004676 ORTHO05D005661 2.0e-35 153.7 124 66.1
Peaxi162Scf00045g00052 Petunia axillaris HOM05D004676 ORTHO05D005661 2.0e-35 153.7 127 65.4
ATR0733G034 Amborella trichopoda HOM05D004676 ORTHO05D005661 2.6e-35 153.3 140 60.0
CDE07G0255 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 2.6e-35 153.3 111 66.7
Cc01_g12890 Coffea canephora HOM05D004676 ORTHO05D005661 2.6e-35 153.3 122 68.0
Nitab4.5_0003154g0010 Nicotiana tabacum HOM05D004676 ORTHO05D005661 2.6e-35 153.3 167 61.7
Ah.04g160390 Amaranthus hybridus HOM05D004676 ORTHO05D005661 3.4e-35 152.9 128 60.2
Cpa.g.sc81.149 Carica papaya HOM05D004676 ORTHO05D005661 3.4e-35 152.9 128 64.1
MD03G1093300 Malus domestica HOM05D004676 ORTHO05D005661 3.4e-35 152.9 124 66.1
PGSC0003DMG400018489 Solanum tuberosum HOM05D004676 ORTHO05D005661 3.4e-35 152.9 127 63.8
Hund18907 Selenicereus undatus HOM05D004676 ORTHO05D005661 4.5e-35 152.5 110 69.1
Eucgr.E01882 Eucalyptus grandis HOM05D004676 ORTHO05D005661 5.9e-35 152.1 113 69.9
Manes.02G133000 Manihot esculenta HOM05D004676 ORTHO05D005661 5.9e-35 152.1 122 65.6
Sed0011846 Sechium edule HOM05D004676 ORTHO05D005661 5.9e-35 152.1 115 71.3
Solyc08g005450.3 Solanum lycopersicum HOM05D004676 ORTHO05D005661 5.9e-35 152.1 127 63.0
THA.LOC104800662 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 5.9e-35 152.1 126 66.7
EL10Ac4g09397 Beta vulgaris HOM05D004676 ORTHO05D005661 7.6e-35 151.8 128 59.4
DCAR_025381 Daucus carota HOM05D004676 ORTHO05D005661 7.6e-35 151.8 130 62.3
Eucgr.E01963 Eucalyptus grandis HOM05D004676 ORTHO05D005661 7.6e-35 151.8 113 69.0
Lsat_1_v5_gn_5_170600 Lactuca sativa HOM05D004676 ORTHO05D005661 7.6e-35 151.8 129 62.0
Sopen08g001490 Solanum pennellii HOM05D004676 ORTHO05D005661 7.6e-35 151.8 127 63.0
THA.LOC104826325 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 7.6e-35 151.8 126 65.9
HanXRQChr01g0009481 Helianthus annuus HOM05D004676 ORTHO05D005661 1.0e-34 151.4 170 59.4
Lalb_Chr06g0163861 Lupinus albus HOM05D004676 ORTHO05D005661 1.0e-34 151.4 132 60.6
Prupe.6G077300 Prunus persica HOM05D004676 ORTHO05D005661 1.0e-34 151.4 124 65.3
TAR633G1457 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.0e-34 151.4 174 59.2
Duzib168G2248 Durio zibethinus HOM05D004676 ORTHO05D005661 1.3e-34 151.0 136 61.8
Manes.01G173800 Manihot esculenta HOM05D004676 ORTHO05D005661 1.3e-34 151.0 146 57.5
QL09p008735 Quercus lobata HOM05D004676 ORTHO05D005661 1.3e-34 151.0 123 65.0
CAN.G137.34 Capsicum annuum HOM05D004676 ORTHO05D005661 1.7e-34 150.6 127 64.6
MELO3C025917.2 Cucumis melo HOM05D004676 ORTHO05D005661 1.7e-34 150.6 136 62.5
CsaV3_6G016860 Cucumis sativus L. HOM05D004676 ORTHO05D005661 1.7e-34 150.6 136 62.5
Dinv12426 Davidia involucrata HOM05D004676 ORTHO05D005661 1.7e-34 150.6 113 68.1
Migut.L00671 Erythranthe guttata HOM05D004676 ORTHO05D005661 1.7e-34 150.6 132 62.1
Hma1.2p1_0418F.1_g149200 Hydrangea macrophylla HOM05D004676 ORTHO05D005661 1.7e-34 150.6 174 61.5
Pp3c8_12040 Physcomitrium patens HOM05D004676 ORTHO05D005661 1.7e-34 150.6 171 52.6
ClCG02G020150 Citrullus lanatus HOM05D004676 ORTHO05D005661 2.2e-34 150.2 136 62.5
Oeu051436.2 Olea europaea HOM05D004676 ORTHO05D005661 2.2e-34 150.2 117 68.4
SHI01165 Sapria himalayana HOM05D004676 ORTHO05D005661 2.2e-34 150.2 168 50.6
SGA_v2.0_scaffold154G37155 Striga asiatica HOM05D004676 ORTHO05D005661 2.2e-34 150.2 116 66.4
Aqoxy7G03598 Aquilegia oxysepala HOM05D004676 ORTHO05D005661 2.9e-34 149.8 118 67.8
AUR62000799 Chenopodium quinoa HOM05D004676 ORTHO05D005661 2.9e-34 149.8 110 70.0
Ciclev10028807m.g Citrus clementina HOM05D004676 ORTHO05D005661 2.9e-34 149.8 122 63.1
PSO151G0082 Papaver somniferum HOM05D004676 ORTHO05D005661 2.9e-34 149.8 131 58.8
PSO339G5531 Papaver somniferum HOM05D004676 ORTHO05D005661 2.9e-34 149.8 131 58.8
RcHm_v2.0_Chr5g0064541 Rosa chinensis HOM05D004676 ORTHO05D005661 2.9e-34 149.8 124 64.5
Thecc.09G321800 Theobroma cacao HOM05D004676 ORTHO05D005661 3.8e-34 149.4 139 58.3
HPP92_003389 Vanilla planifolia HOM05D004676 ORTHO05D005661 3.8e-34 149.4 126 62.7
Atru.chr3.3906 Acer truncatum HOM05D004676 ORTHO05D005661 6.5e-34 148.7 123 59.3
AagrBONN_evm.TU.Sc2ySwM_228.4612 Anthoceros agrestis HOM05D004676 ORTHO05D005661 6.5e-34 148.7 117 67.5
AUR62005169 Chenopodium quinoa HOM05D004676 ORTHO05D005661 6.5e-34 148.7 110 69.1
Nn1g00565 Nelumbo nucifera HOM05D004676 ORTHO05D005661 6.5e-34 148.7 128 60.9
Oeu019194.1 Olea europaea HOM05D004676 ORTHO05D005661 6.5e-34 148.7 115 69.6
Aa31LG5G7310 Aethionema arabicum HOM05D004676 ORTHO05D005661 8.5e-34 148.3 167 58.7
Cpa.g.sc161.42 Carica papaya HOM05D004676 ORTHO05D005661 8.5e-34 148.3 128 61.7
Cfa011505 Carpinus fangiana HOM05D004676 ORTHO05D005661 1.1e-33 147.9 122 62.3
Lalb_Chr02g0143571 Lupinus albus HOM05D004676 ORTHO05D005661 1.4e-33 147.5 132 59.8
SGA_v2.0_scaffold47G17549 Striga asiatica HOM05D004676 ORTHO05D005661 1.4e-33 147.5 117 65.0
FAN11G0391 Fragaria x ananassa HOM05D004676 ORTHO05D005661 1.9e-33 147.1 133 62.4
FAN16G2805 Fragaria x ananassa HOM05D004676 ORTHO05D005661 1.9e-33 147.1 133 62.4
FAN21G2159 Fragaria x ananassa HOM05D004676 ORTHO05D005661 1.9e-33 147.1 126 65.1
FAN25G1996 Fragaria x ananassa HOM05D004676 ORTHO05D005661 1.9e-33 147.1 133 62.4
Sp4g11720 Schrenkiella parvula HOM05D004676 ORTHO05D005661 1.9e-33 147.1 126 62.7
CiPaw.14G068300 Carya illinoinensis HOM05D004676 ORTHO05D005661 2.5e-33 146.7 122 61.5
Glyma.10G284600 Glycine max HOM05D004676 ORTHO05D005661 3.2e-33 146.4 112 65.2
BolC4t27336H Brassica oleracea HOM05D004676 ORTHO05D005661 4.2e-33 146.0 126 62.7
Haze_12047 Corylus avellana HOM05D004676 ORTHO05D005661 4.2e-33 146.0 109 69.7
Glyma.20G104700 Glycine max HOM05D004676 ORTHO05D005661 5.5e-33 145.6 172 55.2
Phvul.007G016200 Phaseolus vulgaris HOM05D004676 ORTHO05D005661 5.5e-33 145.6 112 67.0
AL4G23440 Arabidopsis lyrata HOM05D004676 ORTHO05D005661 7.2e-33 145.2 126 61.9
AT2G28910 Arabidopsis thaliana HOM05D004676 ORTHO05D005661 7.2e-33 145.2 126 62.7
CANSAT21G2535 Cannabis sativa HOM05D004676 ORTHO05D005661 7.2e-33 145.2 135 60.7
CARHR122080 Cardamine hirsuta HOM05D004676 ORTHO05D005661 7.2e-33 145.2 126 61.9
CiPaw.13G094200 Carya illinoinensis HOM05D004676 ORTHO05D005661 7.2e-33 145.2 114 65.8
Ca_09918_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 7.2e-33 145.2 111 67.6
Haze_24097 Corylus avellana HOM05D004676 ORTHO05D005661 7.2e-33 145.2 122 62.3
BcaB02g10212 Brassica carinata HOM05D004676 ORTHO05D005661 9.3e-33 144.8 117 65.8
Psat0s2898g0040 Pisum sativum HOM05D004676 ORTHO05D005661 9.3e-33 144.8 111 64.9
arahy.Tifrunner.gnm1.ann1.ID2MIU Arachis hypogaea HOM05D004676 ORTHO05D005661 1.2e-32 144.4 120 61.7
Carub.0004s0990 Capsella rubella HOM05D004676 ORTHO05D005661 1.2e-32 144.4 168 58.3
VMungo0720G1898 Vigna mungo HOM05D004676 ORTHO05D005661 1.2e-32 144.4 112 66.1
A07p19390 Brassica napus HOM05D004676 ORTHO05D005661 1.6e-32 144.1 111 68.5
BcaC02g08125 Brassica carinata HOM05D004676 ORTHO05D005661 2.7e-32 143.3 111 67.6
FvH4_3g36111 Fragaria vesca HOM05D004676 ORTHO05D005661 2.7e-32 143.3 133 61.7
BcaC02g11024 Brassica carinata HOM05D004676 ORTHO05D005661 3.6e-32 142.9 126 61.9
A04p05090 Brassica napus HOM05D004676 ORTHO05D005661 3.6e-32 142.9 110 68.2
A04p21940 Brassica napus HOM05D004676 ORTHO05D005661 3.6e-32 142.9 110 68.2
C04p22070 Brassica napus HOM05D004676 ORTHO05D005661 3.6e-32 142.9 126 61.9
BolC4t23730H Brassica oleracea HOM05D004676 ORTHO05D005661 3.6e-32 142.9 126 61.9
BraA04t17761Z Brassica rapa HOM05D004676 ORTHO05D005661 3.6e-32 142.9 110 68.2
Ca_11220_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 3.6e-32 142.9 170 57.6
TPR.G18864 Trifolium pratense HOM05D004676 ORTHO05D005661 7.9e-32 141.7 110 65.5
Os09g0103700 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 1.0e-31 141.4 172 51.2
COL.COLO4_18509 Corchorus olitorius HOM05D004676 ORTHO05D005661 1.8e-31 140.6 102 73.5
DCAR_024536 Daucus carota HOM05D004676 ORTHO05D005661 1.8e-31 140.6 121 59.5
Eucgr.J02052 Eucalyptus grandis HOM05D004676 ORTHO05D005661 1.8e-31 140.6 142 56.3
Zm00001eb095710 Zea mays HOM05D004676 ORTHO05D005661 1.8e-31 140.6 142 54.9
Zm00001eb307410 Zea mays HOM05D004676 ORTHO05D005661 2.3e-31 140.2 135 57.8
TAR677G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 5.1e-31 139.0 166 54.2
Lj5g0019317 Lotus japonicus HOM05D004676 ORTHO05D005661 1.9e-30 137.1 113 65.5
RcHm_v2.0_Chr5g0064551 Rosa chinensis HOM05D004676 ORTHO05D005661 1.9e-30 137.1 113 65.5
ECA248G3797 Erigeron canadensis HOM05D004676 ORTHO05D005661 4.3e-30 136.0 128 56.2
Actinidia23939 Actinidia chinensis HOM05D004676 ORTHO05D005661 9.7e-30 134.8 115 59.1
ECA233G5350 Erigeron canadensis HOM05D004676 ORTHO05D005661 9.7e-30 134.8 128 57.0
Actinidia34405 Actinidia chinensis HOM05D004676 ORTHO05D005661 1.3e-29 134.4 171 49.7
TAR100G0004 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.3e-29 134.4 142 57.7
TAR383G0008 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.3e-29 134.4 113 65.5
TAR455G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.3e-29 134.4 113 65.5
TAR588G0001 Trochodendron aralioides HOM05D004676 ORTHO05D005661 3.7e-29 132.9 142 57.0
RcHm_v2.0_Chr5g0064841 Rosa chinensis HOM05D004676 ORTHO05D005661 1.1e-28 131.3 110 62.7
FvH4_3g36120 Fragaria vesca HOM05D002246 ORTHO05D002308 2.4e-28 130.2 113 61.1
FAN11G1736 Fragaria x ananassa HOM05D002246 ORTHO05D002308 2.4e-28 130.2 113 61.1
BraA07t29644Z Brassica rapa HOM05D004676 ORTHO05D005661 1.5e-27 127.5 102 65.7
Os05g0297400 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 5.9e-27 125.6 125 56.0
C04p58100 Brassica napus HOM05D004676 ORTHO05D005661 7.7e-27 125.2 97 67.0
ECA233G0785 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.1e-22 111.3 93 62.4
BraA07t30700Z Brassica rapa HOM05D004676 ORTHO05D005661 1.7e-21 107.5 90 66.7
CBR_g53496 Chara braunii HOM05D004676 ORTHO05D137281 1.7e-21 107.5 110 51.8
ECA233G0017 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.1e-20 104.8 93 61.3
ATR0693G379 Amborella trichopoda HOM05D004676 ORTHO05D005661 9.1e-20 101.7 140 47.9
MD11G1107700 Malus domestica HOM05D004676 ORTHO05D005661 7.2e-17 92.0 72 68.1
Dinv42954 Davidia involucrata HOM05D004736 ORTHO05D006424 1.4e-15 87.8 43 93.0
Dinv43146 Davidia involucrata HOM05D004736 ORTHO05D006424 1.4e-15 87.8 43 93.0
ECA233G2734 Erigeron canadensis HOM05D004676 ORTHO05D005661 2.2e-13 80.5 43 88.4
HPP92_003385 Vanilla planifolia HOM05D004676 ORTHO05D005661 1.1e-12 78.2 65 60.0
ECA233G4946 Erigeron canadensis HOM05D004676 ORTHO05D005661 4.1e-12 76.3 72 58.3
ECA247G4102 Erigeron canadensis HOM05D004676 ORTHO05D005661 7.0e-12 75.5 101 46.5
Eucgr.E01961 Eucalyptus grandis HOM05D004676 ORTHO05D005661 3.5e-11 73.2 57 64.9
RcHm_v2.0_Chr5g0064811 Rosa chinensis HOM05D004676 ORTHO05D005661 6.5e-10 68.9 110 43.6
TAR625G0807 Trochodendron aralioides HOM05D004676 ORTHO05D005661 4.2e-09 66.2 57 61.4
SEGI_06382 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 9.7e-06 55.1 43 62.8


User provided reference genes

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