Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0166 Selaginella moellendorffii HOM05D006673 ORTHO05D008458 6.6e-80 300.8 173 100.0
SEGI_08209 Sequoiadendron giganteum HOM05D006673 ORTHO05D008458 3.5e-49 198.7 174 51.7
ATR0582G160 Amborella trichopoda HOM05D006673 ORTHO05D008458 1.3e-46 190.3 166 59.6
MBI07_g11065_MAGBIO Magnolia biondii HOM05D006673 ORTHO05D008458 3.4e-44 182.2 168 48.8
HPP92_003450 Vanilla planifolia HOM05D006673 ORTHO05D008458 4.5e-44 181.8 161 49.1
Manes.10G153800 Manihot esculenta HOM05D006673 ORTHO05D008458 1.0e-43 180.6 163 47.9
Nn4g22041 Nelumbo nucifera HOM05D006673 ORTHO05D008458 2.2e-43 179.5 161 50.3
arahy.Tifrunner.gnm1.ann1.P1HIL5 Arachis hypogaea HOM05D006673 ORTHO05D008458 1.1e-42 177.2 164 49.4
Pp3c15_12800 Physcomitrium patens HOM05D006673 ORTHO05D008458 1.1e-42 177.2 179 52.0
TWI36G0954 Tripterygium wilfordii HOM05D006673 ORTHO05D008458 1.9e-42 176.4 166 49.4
Aa31LG8G16640 Aethionema arabicum HOM05D006673 ORTHO05D008458 5.5e-42 174.9 160 56.2
Dinv29754 Davidia involucrata HOM05D006673 ORTHO05D008458 5.5e-42 174.9 163 48.5
Solyc09g090030.2 Solanum lycopersicum HOM05D006673 ORTHO05D008458 5.5e-42 174.9 166 58.4
Sopen09g032940 Solanum pennellii HOM05D006673 ORTHO05D008458 5.5e-42 174.9 166 57.8
Lj4g0022593 Lotus japonicus HOM05D006673 ORTHO05D008458 9.4e-42 174.1 173 62.4
THA.LOC104820538 Tarenaya hassleriana HOM05D006673 ORTHO05D008458 1.2e-41 173.7 162 64.8
TPR.G11866 Trifolium pratense HOM05D006673 ORTHO05D008458 1.6e-41 173.3 184 51.1
Eucgr.J01694 Eucalyptus grandis HOM05D006673 ORTHO05D008458 2.1e-41 172.9 167 53.9
SalBow2G2533 Salvia bowleyana HOM05D006673 ORTHO05D008458 2.1e-41 172.9 149 64.4
C09p14800 Brassica napus HOM05D006673 ORTHO05D008458 4.6e-41 171.8 159 56.0
BolC9t54380H Brassica oleracea HOM05D006673 ORTHO05D008458 4.6e-41 171.8 159 57.9
Zm00001eb413710 Zea mays HOM05D006673 ORTHO05D008458 4.6e-41 171.8 176 56.2
VMungo0251G3148 Vigna mungo HOM05D006673 ORTHO05D008458 6.1e-41 171.4 167 47.9
Potri.001G071700 Populus trichocarpa HOM05D006673 ORTHO05D008458 7.9e-41 171.0 163 46.0
Sabra01G0050400 Salix brachista HOM05D006673 ORTHO05D008458 7.9e-41 171.0 163 46.0
EL10Ac1g00795 Beta vulgaris HOM05D006673 ORTHO05D008458 1.0e-40 170.6 158 51.3
AL3G48590 Arabidopsis lyrata HOM05D006673 ORTHO05D008458 1.4e-40 170.2 166 54.2
Gohir.A09G235100 Gossypium hirsutum HOM05D006673 ORTHO05D008458 1.4e-40 170.2 166 56.0
Gohir.D09G235900 Gossypium hirsutum HOM05D006673 ORTHO05D008458 1.4e-40 170.2 166 47.0
Gorai.006G259000 Gossypium raimondii HOM05D006673 ORTHO05D008458 1.4e-40 170.2 166 56.0
BcaC04g22837 Brassica carinata HOM05D006673 ORTHO05D008458 1.8e-40 169.9 163 59.5
Lalb_Chr13g0293391 Lupinus albus HOM05D006673 ORTHO05D008458 1.8e-40 169.9 173 47.4
Ciclev10028653m.g Citrus clementina HOM05D006673 ORTHO05D008458 2.3e-40 169.5 157 48.4
Phvul.002G185500 Phaseolus vulgaris HOM05D006673 ORTHO05D008458 2.3e-40 169.5 171 46.8
PSO675G2922 Papaver somniferum HOM05D006673 ORTHO05D008458 3.0e-40 169.1 176 45.5
Sc02g0002970 Simmondsia chinensis HOM05D006673 ORTHO05D008458 3.0e-40 169.1 162 50.0
Glyma.08G091700 Glycine max HOM05D006673 ORTHO05D008458 3.9e-40 168.7 167 47.3
QL02p002326 Quercus lobata HOM05D006673 ORTHO05D008458 3.9e-40 168.7 169 55.0
PGSC0003DMG400017176 Solanum tuberosum HOM05D006673 ORTHO05D008458 5.1e-40 168.3 169 55.6
AT2G19640 Arabidopsis thaliana HOM05D006673 ORTHO05D008458 6.7e-40 167.9 166 50.0
CAN.G793.53 Capsicum annuum HOM05D006673 ORTHO05D008458 6.7e-40 167.9 169 63.3
CARHR110080 Cardamine hirsuta HOM05D006673 ORTHO05D008458 6.7e-40 167.9 159 46.5
Thecc.04G298100 Theobroma cacao HOM05D006673 ORTHO05D008458 6.7e-40 167.9 163 46.6
PGR119G0473 Punica granatum HOM05D006673 ORTHO05D008458 8.8e-40 167.5 157 60.5
CiPaw.05G097000 Carya illinoinensis HOM05D006673 ORTHO05D008458 1.1e-39 167.2 169 52.1
CBR_g8931 Chara braunii HOM05D006673 ORTHO05D008458 1.1e-39 167.2 242 45.0
DCAR_030439 Daucus carota HOM05D006673 ORTHO05D008458 1.1e-39 167.2 173 48.6
Thhalv10002010m.g Eutrema salsugineum HOM05D006673 ORTHO05D008458 1.1e-39 167.2 163 63.2
BraA09t36893Z Brassica rapa HOM05D006673 ORTHO05D008458 1.5e-39 166.8 165 61.8
Hma1.2p1_0738F.1_g211070 Hydrangea macrophylla HOM05D006673 ORTHO05D008458 1.5e-39 166.8 169 63.3
Atru.chr12.1483 Acer truncatum HOM05D006673 ORTHO05D008458 2.5e-39 166.0 166 57.8
CARHR237330 Cardamine hirsuta HOM05D006673 ORTHO05D008458 2.5e-39 166.0 165 54.5
A09p12490 Brassica napus HOM05D006673 ORTHO05D008458 3.3e-39 165.6 166 56.6
Carub.0003s3394 Capsella rubella HOM05D006673 ORTHO05D008458 3.3e-39 165.6 165 53.3
Duzib151G0613 Durio zibethinus HOM05D006673 ORTHO05D008458 4.3e-39 165.2 168 44.6
Os08g0205300 Oryza sativa ssp. japonica HOM05D006673 ORTHO05D008458 5.7e-39 164.9 172 54.7
Cpa.g.sc38.24 Carica papaya HOM05D006673 ORTHO05D008458 7.4e-39 164.5 177 47.5
Migut.I00849 Erythranthe guttata HOM05D006673 ORTHO05D008458 1.7e-38 163.3 164 63.4
Eucgr.J01690 Eucalyptus grandis HOM05D006673 ORTHO05D008458 4.8e-38 161.8 161 46.6
Hund17075 Selenicereus undatus HOM05D006673 ORTHO05D008458 6.3e-38 161.4 151 49.0
AagrBONN_evm.TU.Sc2ySwM_368.2743 Anthoceros agrestis HOM05D006673 ORTHO05D008458 1.4e-37 160.2 166 42.2
Aqoxy5G02914 Aquilegia oxysepala HOM05D006673 ORTHO05D008458 1.8e-37 159.8 171 43.3
MSTRG.22700 Avicennia marina HOM05D006673 ORTHO05D008458 1.8e-37 159.8 167 51.5
Prupe.1G210500 Prunus persica HOM05D006673 ORTHO05D008458 2.4e-37 159.5 172 57.6
Rhsim01G0183300 Rhododendron simsii HOM05D006673 ORTHO05D008458 3.1e-37 159.1 171 45.0
Haze_12539 Corylus avellana HOM05D006673 ORTHO05D008458 4.1e-37 158.7 165 57.6
Nitab4.5_0011884g0020 Nicotiana tabacum HOM05D006673 ORTHO05D000046 5.3e-37 158.3 164 55.5
TAR371G1163 Trochodendron aralioides HOM05D006673 ORTHO05D008458 6.9e-37 157.9 158 49.4
TAR371G1265 Trochodendron aralioides HOM05D006673 ORTHO05D008458 6.9e-37 157.9 158 46.8
Ah.05g173360 Amaranthus hybridus HOM05D006673 ORTHO05D008458 9.1e-37 157.5 154 59.1
HanXRQChr06g0175351 Helianthus annuus HOM05D006673 ORTHO05D008458 1.2e-36 157.1 166 53.6
MD13G1134900 Malus domestica HOM05D006673 ORTHO05D008458 2.0e-36 156.4 170 59.4
unitig_744.g24339 Utricularia gibba HOM05D006673 ORTHO05D008458 2.0e-36 156.4 164 54.9
Cc03_g11070 Coffea canephora HOM05D006673 ORTHO05D008458 4.5e-36 155.2 172 47.1
Nitab4.5_0000044g0230 Nicotiana tabacum HOM05D000052 ORTHO05D008458 7.7e-36 154.5 159 52.8
MD16G1130700 Malus domestica HOM05D006673 ORTHO05D008458 2.9e-35 152.5 185 48.6
SGA_v2.0_scaffold37G14814 Striga asiatica HOM05D006673 ORTHO05D008458 2.9e-35 152.5 162 48.8
Sp3g33010 Schrenkiella parvula HOM05D006673 ORTHO05D008458 5.0e-35 151.8 189 49.2
FAN07G2695 Fragaria x ananassa HOM05D006673 ORTHO05D008458 1.4e-34 150.2 171 52.6
FAN12G2690 Fragaria x ananassa HOM05D006673 ORTHO05D008458 2.5e-34 149.4 172 41.3
FvH4_4g22020 Fragaria vesca HOM05D006673 ORTHO05D008458 7.2e-34 147.9 172 45.9
Lsat_1_v5_gn_3_33341 Lactuca sativa HOM05D006673 ORTHO05D008458 7.2e-34 147.9 170 41.8
RcHm_v2.0_Chr4g0428221 Rosa chinensis HOM05D006673 ORTHO05D008458 7.2e-34 147.9 168 54.8
Ca_25111_v3 Cicer arietinum L. HOM05D006673 ORTHO05D008458 2.1e-33 146.4 155 41.9
ECA246G2067 Erigeron canadensis HOM05D006673 ORTHO05D008458 7.9e-33 144.4 171 40.4
AUR62004124 Chenopodium quinoa HOM05D006673 ORTHO05D008458 1.8e-32 143.3 159 42.8
Medtr5g027020 Medicago truncatula HOM05D006673 ORTHO05D008458 5.1e-32 141.7 158 42.4
TPR.G29135 Trifolium pratense HOM05D006673 ORTHO05D008458 5.1e-32 141.7 158 42.4
Psat6g087440 Pisum sativum HOM05D006673 ORTHO05D008458 3.3e-31 139.0 183 42.1
VMungo1215G0951 Vigna mungo HOM05D006673 ORTHO05D008458 4.4e-31 138.7 155 40.6
EL10Ac1g00801 Beta vulgaris HOM05D006673 ORTHO05D008458 7.4e-31 137.9 154 45.5
Psat2g141640 Pisum sativum HOM05D006673 ORTHO05D008458 1.7e-30 136.7 158 40.5
Psat2g141600 Pisum sativum HOM05D006673 ORTHO05D008458 6.3e-30 134.8 157 39.5
CDE02G2773 Ceratophyllum demersum HOM05D006673 ORTHO05D008458 1.2e-28 130.6 75 68.0
Glyma.01G148700 Glycine max HOM05D006673 ORTHO05D008458 1.5e-28 130.2 159 39.0
Ca_18201_v3 Cicer arietinum L. HOM05D006673 ORTHO05D008458 2.0e-28 129.8 84 66.7
GSVIVG01001133001 Vitis vinifera HOM05D006673 ORTHO05D008458 2.0e-28 129.8 77 68.8
Lalb_Chr05g0215481 Lupinus albus HOM05D006673 ORTHO05D008458 3.5e-28 129.0 160 36.2
Lj3P1076T29 Lonicera japonica HOM05D006673 ORTHO05D008458 1.1e-26 124.0 80 65.0
RcHm_v2.0_Chr4g0427831 Rosa chinensis HOM05D006673 ORTHO05D008458 2.5e-26 122.9 155 49.0
Actinidia30570 Actinidia chinensis HOM05D006673 ORTHO05D008458 3.6e-25 119.0 129 55.8
arahy.Tifrunner.gnm1.ann1.HTSI62 Arachis hypogaea HOM05D006673 ORTHO05D008458 1.1e-21 107.5 81 54.3
arahy.Tifrunner.gnm1.ann1.ZW62G6 Arachis hypogaea HOM05D006673 ORTHO05D008458 1.1e-21 107.5 81 54.3
CSS0030693 Camellia sinensis var. sinensis HOM05D006673 ORTHO05D008458 9.1e-21 104.4 71 59.2
ATR1159G049 Amborella trichopoda HOM05D006673 ORTHO05D008458 1.6e-20 103.6 121 49.6
Cre06.g299850 Chlamydomonas reinhardtii HOM05D006673 ORTHO05D008458 3.2e-18 95.9 254 32.3
AUR62013717 Chenopodium quinoa HOM05D006673 ORTHO05D008458 1.0e-16 90.9 61 59.0
Medtr1g038390 Medicago truncatula HOM05D006673 ORTHO05D008458 4.4e-15 85.5 74 52.7
MCO13G074 Micromonas commoda HOM05D006673 ORTHO05D008458 4.4e-15 85.5 213 25.4
PRCOL_00003758 Prasinoderma coloniale HOM05D006673 ORTHO05D008458 8.3e-14 81.3 175 31.4
Actinidia22101 Actinidia chinensis HOM05D006673 ORTHO05D008458 1.1e-13 80.9 61 55.7
ATR0759G085 Amborella trichopoda HOM05D006673 ORTHO05D008458 2.4e-13 79.7 102 44.1
COL.COLO4_34640 Corchorus olitorius HOM05D006673 ORTHO05D008458 1.4e-08 63.9 35 68.6
SMO361G0130 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 8.8e-08 61.2 77 33.8
Mapoly0048s0091 Marchantia polymorpha HOM05D003388 ORTHO05D003616 3.4e-07 59.3 75 36.0
CsaV3_5G032950 Cucumis sativus L. HOM05D003388 ORTHO05D003616 4.4e-07 58.9 78 38.5
SMO367G0641 Selaginella moellendorffii HOM05D004492 ORTHO05D030137 4.4e-07 58.9 71 33.8
MELO3C012115.2 Cucumis melo HOM05D003388 ORTHO05D003616 5.7e-07 58.5 78 37.2
ClCG05G024100 Citrullus lanatus HOM05D003388 ORTHO05D003616 1.3e-06 57.4 78 38.5
Lalb_Chr06g0173431 Lupinus albus HOM05D007640 ORTHO05D009514 1.3e-06 57.4 71 36.6
Lj5g0008255 Lotus japonicus HOM05D007640 ORTHO05D009514 1.7e-06 57.0 69 37.7
Oeu041941.2 Olea europaea HOM05D001891 ORTHO05D005832 2.2e-06 56.6 73 41.1
Zm00001eb048280 Zea mays HOM05D007640 ORTHO05D009514 2.8e-06 56.2 69 36.2
Cre02.g116850 Chlamydomonas reinhardtii HOM05D001891 ORTHO05D009514 3.7e-06 55.8 74 40.5
PRCOL_00006858 Prasinoderma coloniale HOM05D004492 ORTHO05D005602 3.7e-06 55.8 76 34.2
arahy.Tifrunner.gnm1.ann1.HT4QGD Arachis hypogaea HOM05D007640 ORTHO05D009514 4.9e-06 55.5 69 37.7
A09p40170 Brassica napus HOM05D003388 ORTHO05D003616 4.9e-06 55.5 77 35.1
BraA09t39515Z Brassica rapa HOM05D003388 ORTHO05D003616 4.9e-06 55.5 77 35.1
MCO03G599 Micromonas commoda HOM05D003388 ORTHO05D003616 4.9e-06 55.5 78 34.6
arahy.Tifrunner.gnm1.ann1.RTBW6H Arachis hypogaea HOM05D007640 ORTHO05D009514 6.3e-06 55.1 69 37.7
DCAR_017043 Daucus carota HOM05D007640 ORTHO05D009514 6.3e-06 55.1 69 34.8
Migut.K00015 Erythranthe guttata HOM05D007640 ORTHO05D009514 6.3e-06 55.1 71 33.8
Mapoly0082s0074 Marchantia polymorpha HOM05D004492 ORTHO05D030137 6.3e-06 55.1 71 35.2
MSTRG.25402 Avicennia marina HOM05D004492 ORTHO05D005602 8.3e-06 54.7 157 23.6
CsaV3_2G035180 Cucumis sativus L. HOM05D001891 ORTHO05D005832 8.3e-06 54.7 73 37.0
SMO203G0010 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 8.3e-06 54.7 77 36.4


User provided reference genes

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