Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.2e-49 199.5 98 100.0
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 4.8e-35 151.0 98 78.6
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 8.5e-24 113.6 98 58.2
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.9e-23 112.5 93 61.3
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 3.2e-23 111.7 93 61.3
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 4.2e-23 111.3 98 54.1
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 1.2e-22 109.8 98 53.1
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 2.7e-22 108.6 98 55.1
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 4.7e-22 107.8 98 52.0
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 6.1e-22 107.5 98 54.1
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 1.4e-21 106.3 93 59.1
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.8e-21 105.9 98 52.0
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 1.8e-21 105.9 98 53.1
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 1.8e-21 105.9 98 55.1
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 3.0e-21 105.1 93 55.9
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 4.0e-21 104.8 98 53.1
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 5.2e-21 104.4 98 52.0
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 5.2e-21 104.4 98 54.1
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 5.2e-21 104.4 98 54.1
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 8.8e-21 103.6 98 53.1
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 1.1e-20 103.2 98 50.0
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.1e-20 103.2 68 75.0
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 1.1e-20 103.2 98 52.0
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 2.0e-20 102.4 98 51.0
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 2.6e-20 102.1 98 53.1
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 3.3e-20 101.7 98 52.0
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 3.3e-20 101.7 98 52.0
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 3.3e-20 101.7 98 51.0
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 4.4e-20 101.3 98 51.0
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 4.4e-20 101.3 98 50.0
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 4.4e-20 101.3 98 54.1
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 5.7e-20 100.9 98 51.0
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 5.7e-20 100.9 98 51.0
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 5.7e-20 100.9 98 49.0
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 5.7e-20 100.9 98 49.0
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 5.7e-20 100.9 98 49.0
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 5.7e-20 100.9 98 52.0
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 7.4e-20 100.5 98 51.0
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 9.7e-20 100.1 98 49.0
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 9.7e-20 100.1 93 53.8
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 1.3e-19 99.8 98 50.0
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 1.3e-19 99.8 93 54.8
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 1.7e-19 99.4 98 49.0
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 1.7e-19 99.4 98 49.0
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.7e-19 99.4 98 46.9
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 1.7e-19 99.4 93 52.7
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 2.2e-19 99.0 98 50.0
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 2.8e-19 98.6 98 46.9
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 2.8e-19 98.6 93 53.8
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 2.8e-19 98.6 98 50.0
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 3.7e-19 98.2 98 50.0
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 3.7e-19 98.2 98 48.0
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 4.8e-19 97.8 98 48.0
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 4.8e-19 97.8 98 49.0
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 6.3e-19 97.4 98 50.0
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 6.3e-19 97.4 98 49.0
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 6.3e-19 97.4 93 52.7
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 6.3e-19 97.4 98 49.0
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 6.3e-19 97.4 98 49.0
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 6.3e-19 97.4 98 48.0
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 8.2e-19 97.1 98 48.0
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 8.2e-19 97.1 98 49.0
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 8.2e-19 97.1 98 48.0
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 8.2e-19 97.1 98 49.0
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 8.2e-19 97.1 98 48.0
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 8.2e-19 97.1 98 49.0
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 8.2e-19 97.1 98 48.0
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 8.2e-19 97.1 98 49.0
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 8.2e-19 97.1 98 48.0
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 8.2e-19 97.1 98 49.0
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 8.2e-19 97.1 98 50.0
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 8.2e-19 97.1 98 50.0
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 8.2e-19 97.1 98 50.0
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 8.2e-19 97.1 98 50.0
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.1e-18 96.7 98 49.0
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 1.1e-18 96.7 98 49.0
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 1.1e-18 96.7 98 50.0
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 1.4e-18 96.3 98 48.0
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 1.4e-18 96.3 98 48.0
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 1.4e-18 96.3 98 46.9
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 1.8e-18 95.9 98 48.0
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 1.8e-18 95.9 98 48.0
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 1.8e-18 95.9 98 49.0
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 1.8e-18 95.9 98 50.0
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 2.4e-18 95.5 98 46.9
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 2.4e-18 95.5 98 49.0
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 2.4e-18 95.5 98 50.0
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 2.4e-18 95.5 98 49.0
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 2.4e-18 95.5 98 50.0
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 3.1e-18 95.1 98 48.0
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 4.1e-18 94.7 98 48.0
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 4.1e-18 94.7 98 49.0
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 4.1e-18 94.7 98 48.0
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 4.1e-18 94.7 98 48.0
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 4.1e-18 94.7 98 48.0
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 5.3e-18 94.4 98 48.0
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 5.3e-18 94.4 98 48.0
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 5.3e-18 94.4 98 49.0
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 7.0e-18 94.0 98 46.9
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 7.0e-18 94.0 98 49.0
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 9.1e-18 93.6 98 46.9
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.6e-17 92.8 98 44.9
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 3.5e-17 91.7 98 45.9
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 3.5e-17 91.7 92 50.0
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 4.5e-17 91.3 98 45.9
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 1.0e-16 90.1 98 45.9
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 1.3e-16 89.7 98 45.9
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 2.2e-16 89.0 98 45.9
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 2.2e-16 89.0 98 44.9
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 1.1e-15 86.7 82 54.9
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 1.2e-14 83.2 98 44.9
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 1.2e-14 83.2 98 43.9
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 2.1e-14 82.4 98 42.9
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 2.1e-14 82.4 98 42.9
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 2.7e-14 82.0 77 50.6
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 2.7e-14 82.0 98 40.8
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 4.7e-14 81.3 98 42.9
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 6.1e-14 80.9 98 40.8
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 1.0e-13 80.1 98 40.8
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 1.8e-13 79.3 99 41.4
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 1.8e-13 79.3 99 41.4
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 2.3e-13 79.0 98 42.9
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 8.8e-13 77.0 98 41.8
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 3.4e-12 75.1 98 39.8
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 1.3e-11 73.2 98 39.8
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 2.2e-11 72.4 65 50.8
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 2.4e-10 68.9 98 40.8
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 2.4e-10 68.9 98 40.8
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 3.1e-10 68.6 65 49.2
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 3.5e-09 65.1 77 39.0
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 2.2e-08 62.4 69 43.5


User provided reference genes

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