Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 4.7e-30 133.7 58 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 2.6e-20 101.3 58 70.7
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 3.4e-20 100.9 58 70.7
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 7.5e-20 99.8 58 70.7
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 7.5e-20 99.8 58 70.7
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 9.8e-20 99.4 58 72.4
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 9.8e-20 99.4 58 69.0
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 1.3e-19 99.0 58 69.0
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 1.3e-19 99.0 58 70.7
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 1.7e-19 98.6 58 69.0
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 1.7e-19 98.6 58 69.0
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 1.7e-19 98.6 58 69.0
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 1.7e-19 98.6 58 69.0
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 2.2e-19 98.2 58 69.0
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 2.9e-19 97.8 58 67.2
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 3.7e-19 97.4 58 67.2
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 3.7e-19 97.4 58 67.2
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 3.7e-19 97.4 58 67.2
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 3.7e-19 97.4 58 67.2
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 4.9e-19 97.1 58 67.2
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 6.4e-19 96.7 56 67.9
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 6.4e-19 96.7 58 70.7
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 8.3e-19 96.3 57 64.9
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 1.1e-18 95.9 58 67.2
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 1.1e-18 95.9 58 67.2
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 1.4e-18 95.5 58 67.2
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 1.9e-18 95.1 58 67.2
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 1.9e-18 95.1 58 65.5
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 1.9e-18 95.1 58 65.5
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.9e-18 95.1 58 69.0
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 2.4e-18 94.7 58 63.8
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 2.4e-18 94.7 58 67.2
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 3.2e-18 94.4 58 65.5
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 3.2e-18 94.4 58 65.5
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 4.1e-18 94.0 58 65.5
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 4.1e-18 94.0 58 65.5
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 4.1e-18 94.0 58 65.5
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 4.1e-18 94.0 58 65.5
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 4.1e-18 94.0 58 63.8
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 5.4e-18 93.6 58 65.5
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 5.4e-18 93.6 58 67.2
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 5.4e-18 93.6 58 65.5
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 5.4e-18 93.6 58 65.5
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 5.4e-18 93.6 58 65.5
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 5.4e-18 93.6 58 65.5
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 5.4e-18 93.6 58 65.5
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 7.0e-18 93.2 58 65.5
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 7.0e-18 93.2 57 66.7
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 7.0e-18 93.2 58 65.5
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 7.0e-18 93.2 58 65.5
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 7.0e-18 93.2 58 63.8
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 9.2e-18 92.8 58 65.5
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 9.2e-18 92.8 54 66.7
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 9.2e-18 92.8 54 66.7
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 9.2e-18 92.8 58 63.8
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 9.2e-18 92.8 58 65.5
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 1.2e-17 92.4 58 63.8
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 1.2e-17 92.4 58 65.5
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 1.6e-17 92.0 58 65.5
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 1.6e-17 92.0 59 66.1
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 1.6e-17 92.0 58 63.8
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 1.6e-17 92.0 58 62.1
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 1.6e-17 92.0 59 66.1
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 1.6e-17 92.0 59 66.1
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.6e-17 92.0 58 63.8
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.6e-17 92.0 58 63.8
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 2.0e-17 91.7 58 62.1
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 2.0e-17 91.7 58 65.5
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 2.0e-17 91.7 58 65.5
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 2.0e-17 91.7 58 63.8
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 2.0e-17 91.7 58 63.8
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 2.0e-17 91.7 58 62.1
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 2.0e-17 91.7 58 65.5
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 2.0e-17 91.7 58 62.1
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 2.0e-17 91.7 58 63.8
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 2.7e-17 91.3 58 65.5
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 2.7e-17 91.3 58 65.5
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 2.7e-17 91.3 58 63.8
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 2.7e-17 91.3 58 62.1
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 2.7e-17 91.3 58 63.8
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 2.7e-17 91.3 57 63.2
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 3.5e-17 90.9 58 62.1
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 3.5e-17 90.9 58 63.8
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 3.5e-17 90.9 58 63.8
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 3.5e-17 90.9 58 62.1
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 4.6e-17 90.5 58 62.1
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 4.6e-17 90.5 56 62.5
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 4.6e-17 90.5 56 62.5
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 4.6e-17 90.5 56 62.5
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 4.6e-17 90.5 56 62.5
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 4.6e-17 90.5 58 63.8
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 4.6e-17 90.5 58 65.5
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 4.6e-17 90.5 58 65.5
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 4.6e-17 90.5 58 63.8
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 6.0e-17 90.1 58 65.5
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 7.8e-17 89.7 58 63.8
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 7.8e-17 89.7 58 65.5
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 7.8e-17 89.7 58 65.5
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 7.8e-17 89.7 58 63.8
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 7.8e-17 89.7 58 63.8
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 7.8e-17 89.7 58 65.5
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 7.8e-17 89.7 58 63.8
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.0e-16 89.4 58 62.1
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 1.0e-16 89.4 56 64.3
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 1.3e-16 89.0 58 58.6
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 1.7e-16 88.6 58 63.8
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 1.7e-16 88.6 58 62.1
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 1.7e-16 88.6 58 62.1
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 1.7e-16 88.6 58 62.1
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 1.7e-16 88.6 58 60.3
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 2.3e-16 88.2 58 60.3
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 2.3e-16 88.2 58 62.1
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 2.3e-16 88.2 58 62.1
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 2.3e-16 88.2 58 62.1
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 3.0e-16 87.8 56 66.1
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 3.0e-16 87.8 58 58.6
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 3.9e-16 87.4 58 62.1
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 3.9e-16 87.4 58 60.3
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 3.9e-16 87.4 58 60.3
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 3.9e-16 87.4 58 62.1
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 3.9e-16 87.4 58 60.3
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 5.0e-16 87.0 58 60.3
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 5.0e-16 87.0 58 60.3
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 5.0e-16 87.0 58 60.3
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 6.6e-16 86.7 58 60.3
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 6.6e-16 86.7 58 58.6
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 8.6e-16 86.3 58 62.1
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 8.6e-16 86.3 58 58.6
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 8.6e-16 86.3 58 58.6
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 8.6e-16 86.3 58 60.3
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 1.1e-15 85.9 58 58.6
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 1.1e-15 85.9 58 56.9
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 1.1e-15 85.9 58 60.3
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 1.1e-15 85.9 58 60.3
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 1.5e-15 85.5 58 55.2
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 1.5e-15 85.5 58 55.2
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.9e-15 85.1 58 62.1
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.9e-15 85.1 56 60.7
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 1.9e-15 85.1 58 56.9
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 2.5e-15 84.7 58 60.3
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 3.3e-15 84.3 58 60.3
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.3e-15 84.3 58 60.3
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 3.3e-15 84.3 58 55.2
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 3.3e-15 84.3 58 56.9
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 4.3e-15 84.0 58 58.6
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.3e-15 84.0 58 60.3
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 5.6e-15 83.6 58 60.3
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 1.2e-14 82.4 58 58.6
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 1.2e-14 82.4 58 58.6
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.2e-14 82.4 49 61.2
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 1.2e-14 82.4 58 51.7
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 2.1e-14 81.6 58 53.4
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 2.1e-14 81.6 58 58.6
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 2.1e-14 81.6 58 55.2
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.8e-14 81.3 58 55.2
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 2.8e-14 81.3 58 60.3
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 2.8e-14 81.3 58 60.3
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 6.2e-14 80.1 58 53.4
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 8.1e-14 79.7 54 57.4
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.8e-13 78.6 58 56.9
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 2.3e-13 78.2 51 56.9
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 4.0e-13 77.4 61 52.5
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 6.8e-13 76.6 58 51.7
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 8.9e-13 76.3 51 56.9
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 3.4e-12 74.3 58 53.4
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 5.8e-12 73.6 58 55.2
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 5.8e-12 73.6 87 42.5
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 4.9e-11 70.5 54 53.7
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 4.9e-11 70.5 58 53.4
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 6.4e-11 70.1 58 51.7
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 6.4e-11 70.1 58 51.7
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 1.4e-10 68.9 58 55.2
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 2.7e-09 64.7 46 58.7
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 2.7e-09 64.7 46 58.7
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 7.8e-09 63.2 37 59.5
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 1.0e-08 62.8 33 69.7
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 1.3e-08 62.4 32 71.9
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 1.3e-08 62.4 32 71.9
Os02g0541700 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 3.6e-06 54.3 58 44.8
Zm00001eb243140 Zea mays HOM05D003896 ORTHO05D004517 4.7e-06 53.9 58 44.8
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 6.2e-06 53.5 58 44.8


User provided reference genes

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