Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0113 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 5.1e-66 254.2 125 100.0
SMO116G0459 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 9.7e-49 196.8 123 80.5
SMO117G0342 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 5.2e-34 147.9 79 88.6
AagrBONN_evm.TU.Sc2ySwM_362.1715 Anthoceros agrestis HOM05D004536 ORTHO05D005628 3.4e-33 145.2 123 54.5
Pp3c16_16660 Physcomitrium patens HOM05D004536 ORTHO05D005628 2.4e-31 139.0 121 54.5
Mapoly0002s0169 Marchantia polymorpha HOM05D004536 ORTHO05D005628 2.0e-30 136.0 124 50.8
ECA236G2131 Erigeron canadensis HOM05D004536 ORTHO05D005628 6.6e-29 131.0 124 47.6
ATR0598G141 Amborella trichopoda HOM05D004536 ORTHO05D005628 8.6e-29 130.6 123 47.2
SMO201G0127 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 1.1e-28 130.2 83 75.9
VMungo1383G2476 Vigna mungo HOM05D004536 ORTHO05D005628 1.5e-28 129.8 121 47.1
Psat3g023800 Pisum sativum HOM05D004536 ORTHO05D005628 1.9e-28 129.4 123 47.2
CBR_g44348 Chara braunii HOM05D004536 ORTHO05D005628 2.5e-28 129.0 125 50.4
HanXRQChr06g0163971 Helianthus annuus HOM05D004536 ORTHO05D005628 3.3e-28 128.6 123 48.0
Lsat_1_v5_gn_8_54521 Lactuca sativa HOM05D004536 ORTHO05D005628 5.6e-28 127.9 123 47.2
TPR.G9637 Trifolium pratense HOM05D004536 ORTHO05D005628 7.3e-28 127.5 123 48.0
Ca_09139_v3 Cicer arietinum L. HOM05D004536 ORTHO05D005628 9.5e-28 127.1 123 47.2
Migut.N01407 Erythranthe guttata HOM05D004536 ORTHO05D005628 1.6e-27 126.3 123 46.3
Nn4g25926 Nelumbo nucifera HOM05D004536 ORTHO05D005628 3.6e-27 125.2 123 44.7
arahy.Tifrunner.gnm1.ann1.RD3VC2 Arachis hypogaea HOM05D004536 ORTHO05D005628 4.7e-27 124.8 123 44.7
Aqoxy5G00653 Aquilegia oxysepala HOM05D005016 ORTHO05D005628 6.1e-27 124.4 123 45.5
Medtr7g108500 Medicago truncatula HOM05D004536 ORTHO05D005628 6.1e-27 124.4 123 44.7
arahy.Tifrunner.gnm1.ann1.BFHA12 Arachis hypogaea HOM05D004536 ORTHO05D005628 8.0e-27 124.0 123 44.7
Lalb_Chr18g0047231 Lupinus albus HOM05D004536 ORTHO05D005628 8.0e-27 124.0 123 45.5
CDE10G0909 Ceratophyllum demersum HOM05D000137 ORTHO05D000503 1.0e-26 123.6 124 45.2
Manes.05G065100 Manihot esculenta HOM05D004536 ORTHO05D005628 1.8e-26 122.9 123 44.7
Rhsim01G0282800 Rhododendron simsii HOM05D004536 ORTHO05D005628 1.8e-26 122.9 123 46.3
CAN.G339.41 Capsicum annuum HOM05D004536 ORTHO05D005628 3.0e-26 122.1 123 45.5
Nitab4.5_0009457g0010 Nicotiana tabacum HOM05D004536 ORTHO05D005628 5.2e-26 121.3 123 45.5
PGR090G0002 Punica granatum HOM05D004536 ORTHO05D005628 5.2e-26 121.3 123 43.9
PGR119G2278 Punica granatum HOM05D004536 ORTHO05D005628 5.2e-26 121.3 123 43.9
Solyc09g074830.3 Solanum lycopersicum HOM05D004536 ORTHO05D005628 5.2e-26 121.3 123 46.3
Aa31LG1G9600 Aethionema arabicum HOM05D004536 ORTHO05D005628 6.8e-26 120.9 121 47.1
Carub.0001s0210 Capsella rubella HOM05D004536 ORTHO05D005628 6.8e-26 120.9 121 47.1
Migut.M00484 Erythranthe guttata HOM05D004536 ORTHO05D005628 6.8e-26 120.9 123 45.5
Glyma.03G211900 Glycine max HOM05D004536 ORTHO05D005628 6.8e-26 120.9 121 44.6
CARHR002300 Cardamine hirsuta HOM05D004536 ORTHO05D005628 8.9e-26 120.6 121 47.1
Cfa005976 Carpinus fangiana HOM05D004536 ORTHO05D005628 8.9e-26 120.6 121 47.1
DCAR_012399 Daucus carota HOM05D004536 ORTHO05D005628 8.9e-26 120.6 123 43.9
Nitab4.5_0001697g0010 Nicotiana tabacum HOM05D004536 ORTHO05D005628 8.9e-26 120.6 123 45.5
Oeu024513.3 Olea europaea HOM05D004536 ORTHO05D005628 8.9e-26 120.6 123 45.5
Zm00001eb209170 Zea mays HOM05D004536 ORTHO05D005628 8.9e-26 120.6 118 44.9
AL1G12410 Arabidopsis lyrata HOM05D004536 ORTHO05D005628 1.2e-25 120.2 121 46.3
BcaB03g13494 Brassica carinata HOM05D004536 ORTHO05D005628 1.2e-25 120.2 121 46.3
A08p37490 Brassica napus HOM05D004536 ORTHO05D005628 1.2e-25 120.2 121 47.1
BraA08t35647Z Brassica rapa HOM05D004536 ORTHO05D005628 1.2e-25 120.2 121 47.1
GSVIVG01010948001 Vitis vinifera HOM05D004536 ORTHO05D005628 1.2e-25 120.2 123 46.3
Actinidia24840 Actinidia chinensis HOM05D004536 ORTHO05D005628 1.5e-25 119.8 124 44.4
SalBow2G0652 Salvia bowleyana HOM05D004536 ORTHO05D005628 1.5e-25 119.8 129 44.2
AT1G02970 Arabidopsis thaliana HOM05D004536 ORTHO05D005628 2.0e-25 119.4 121 46.3
BcaC07g42280 Brassica carinata HOM05D004536 ORTHO05D005628 2.0e-25 119.4 121 46.3
Carub.0033s0002 Capsella rubella HOM05D004536 ORTHO05D005628 2.0e-25 119.4 120 46.7
CiPaw.07G104100 Carya illinoinensis HOM05D004536 ORTHO05D005628 2.0e-25 119.4 123 44.7
COL.COLO4_23401 Corchorus olitorius HOM05D004536 ORTHO05D005628 2.0e-25 119.4 123 45.5
Lj2A1189G43 Lonicera japonica HOM05D004536 ORTHO05D005628 2.0e-25 119.4 123 44.7
Lj1g0006956 Lotus japonicus HOM05D004536 ORTHO05D005628 2.0e-25 119.4 121 45.5
Phvul.001G204900 Phaseolus vulgaris HOM05D004536 ORTHO05D005628 2.0e-25 119.4 121 43.8
Sp1g01960 Schrenkiella parvula HOM05D004536 ORTHO05D005628 2.0e-25 119.4 121 46.3
BcaB01g06383 Brassica carinata HOM05D004536 ORTHO05D005628 2.6e-25 119.0 121 46.3
C08p00400 Brassica napus HOM05D004536 ORTHO05D005628 2.6e-25 119.0 121 46.3
BolC8t46839H Brassica oleracea HOM05D004536 ORTHO05D005628 2.6e-25 119.0 121 46.3
Dinv33024 Davidia involucrata HOM05D004536 ORTHO05D005628 2.6e-25 119.0 123 44.7
Os02g0135300 Oryza sativa ssp. japonica HOM05D004536 ORTHO05D005628 2.6e-25 119.0 118 45.8
Peaxi162Scf00067g00235 Petunia axillaris HOM05D004536 ORTHO05D005628 2.6e-25 119.0 123 45.5
Sopen09g029670 Solanum pennellii HOM05D004536 ORTHO05D005628 2.6e-25 119.0 123 45.5
PGSC0003DMG400011389 Solanum tuberosum HOM05D004536 ORTHO05D005628 2.6e-25 119.0 123 46.3
Eucgr.H01178 Eucalyptus grandis HOM05D004536 ORTHO05D005628 4.4e-25 118.2 116 45.7
Eucgr.H01182 Eucalyptus grandis HOM05D004536 ORTHO05D005628 4.4e-25 118.2 116 45.7
Thhalv10007445m.g Eutrema salsugineum HOM05D004536 ORTHO05D005628 4.4e-25 118.2 121 46.3
Potri.002G208251 Populus trichocarpa HOM05D004536 ORTHO05D005628 4.4e-25 118.2 121 43.8
Prupe.8G256300 Prunus persica HOM05D004536 ORTHO05D005628 4.4e-25 118.2 123 44.7
QL12p030151 Quercus lobata HOM05D004536 ORTHO05D005628 4.4e-25 118.2 123 45.5
Sabra02G0151200 Salix brachista HOM05D004536 ORTHO05D005628 4.4e-25 118.2 121 43.0
MD03G1283400 Malus domestica HOM05D004536 ORTHO05D005628 7.5e-25 117.5 121 43.8
MD11G1303200 Malus domestica HOM05D004536 ORTHO05D005628 7.5e-25 117.5 123 43.9
Sc17g0003350 Simmondsia chinensis HOM05D004536 ORTHO05D005628 7.5e-25 117.5 121 45.5
Ciclev10024323m.g Citrus clementina HOM05D004536 ORTHO05D005628 9.8e-25 117.1 123 43.9
Cc01_g20560 Coffea canephora HOM05D004536 ORTHO05D005628 9.8e-25 117.1 123 42.3
Gohir.A11G115900 Gossypium hirsutum HOM05D004536 ORTHO05D005628 9.8e-25 117.1 123 43.9
Gohir.D11G120800 Gossypium hirsutum HOM05D004536 ORTHO05D005628 9.8e-25 117.1 123 43.9
MBI16_g23764_MAGBIO Magnolia biondii HOM05D004536 ORTHO05D005628 9.8e-25 117.1 123 43.1
SHI15387 Sapria himalayana HOM05D004536 ORTHO05D005628 1.3e-24 116.7 123 43.9
TAR636G0132 Trochodendron aralioides HOM05D000319 ORTHO05D000903 1.3e-24 116.7 123 43.1
Haze_04870 Corylus avellana HOM05D004536 ORTHO05D005628 1.7e-24 116.3 111 49.5
DCAR_018342 Daucus carota HOM05D004536 ORTHO05D005628 1.7e-24 116.3 123 43.9
THA.LOC104801260 Tarenaya hassleriana HOM05D004536 ORTHO05D005628 1.7e-24 116.3 112 47.3
vmacro14989 Vaccinium macrocarpon HOM05D004536 ORTHO05D005628 1.7e-24 116.3 121 45.5
Ah.15g093870 Amaranthus hybridus HOM05D000154 ORTHO05D000092 2.9e-24 115.5 121 44.6
BcaC07g42414 Brassica carinata HOM05D004536 ORTHO05D005628 2.9e-24 115.5 121 45.5
A09p68450 Brassica napus HOM05D004536 ORTHO05D005628 2.9e-24 115.5 121 45.5
C08p53070 Brassica napus HOM05D004536 ORTHO05D005628 2.9e-24 115.5 121 45.5
BraA09t42188Z Brassica rapa HOM05D004536 ORTHO05D005628 2.9e-24 115.5 121 45.5
Manes.01G215900 Manihot esculenta HOM05D004536 ORTHO05D005628 3.7e-24 115.2 123 43.9
SEGI_27037 Sequoiadendron giganteum HOM05D004536 ORTHO05D005628 3.7e-24 115.2 118 43.2
Gorai.007G129700 Gossypium raimondii HOM05D004536 ORTHO05D005628 8.3e-24 114.0 123 43.1
PSO832G3458 Papaver somniferum HOM05D004536 ORTHO05D005628 8.3e-24 114.0 123 43.1
Potri.014G132400 Populus trichocarpa HOM05D004536 ORTHO05D005628 8.3e-24 114.0 121 43.8
MD11G1302700 Malus domestica HOM05D004536 ORTHO05D005628 1.1e-23 113.6 117 44.4
RcHm_v2.0_Chr6g0293261 Rosa chinensis HOM05D004536 ORTHO05D005628 1.9e-23 112.8 121 42.1
PSO210G1618 Papaver somniferum HOM05D004536 ORTHO05D005628 2.4e-23 112.5 123 43.1
SGA_v2.0_scaffold36G14354 Striga asiatica HOM05D004536 ORTHO05D005628 3.2e-23 112.1 109 46.8
AUR62008593 Chenopodium quinoa HOM05D004536 ORTHO05D005628 4.1e-23 111.7 121 43.0
SMO308G0073 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 5.4e-23 111.3 68 79.4
PRCOL_00003559 Prasinoderma coloniale HOM05D004536 ORTHO05D005628 7.0e-23 110.9 138 42.0
Thecc.01G294900 Theobroma cacao HOM05D004536 ORTHO05D005628 2.0e-22 109.4 123 42.3
Sed0010277 Sechium edule HOM05D004536 ORTHO05D005628 2.7e-22 109.0 118 43.2
VMungo0540G1844 Vigna mungo HOM05D004536 ORTHO05D005628 4.6e-22 108.2 123 35.8
SMO268G0028 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 7.8e-22 107.5 67 77.6
Glyma.13G025500 Glycine max HOM05D004536 ORTHO05D005628 1.0e-21 107.1 120 40.8
ClCG09G006150 Citrullus lanatus HOM05D004536 ORTHO05D005628 1.3e-21 106.7 116 43.1
Migut.K00643 Erythranthe guttata HOM05D004536 ORTHO05D005628 1.3e-21 106.7 114 42.1
CANSAT25G0197 Cannabis sativa HOM05D004536 ORTHO05D005628 1.7e-21 106.3 121 43.8
CANSAT25G0282 Cannabis sativa HOM05D004536 ORTHO05D005628 1.7e-21 106.3 121 43.8
AUR62033185 Chenopodium quinoa HOM05D004536 ORTHO05D005628 1.7e-21 106.3 115 41.7
SMO114G0032 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 1.7e-21 106.3 67 80.6
FvH4_c6g00040 Fragaria vesca HOM05D004536 ORTHO05D005628 2.3e-21 105.9 121 39.7
FAN15G2314 Fragaria x ananassa HOM05D004536 ORTHO05D005628 2.3e-21 105.9 122 41.8
EL10Ac7g17495 Beta vulgaris HOM05D004536 ORTHO05D005628 3.0e-21 105.5 121 41.3
FAN24G0904 Fragaria x ananassa HOM05D004536 ORTHO05D005628 3.0e-21 105.5 121 39.7
FAN20G2283 Fragaria x ananassa HOM05D004536 ORTHO05D005628 3.9e-21 105.1 122 39.3
SMO014G0012 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 8.6e-21 104.0 67 77.6
MELO3C016039.2 Cucumis melo HOM05D004536 ORTHO05D005628 1.1e-20 103.6 116 42.2
CsaV3_7G029010 Cucumis sativus L. HOM05D004536 ORTHO05D005628 1.1e-20 103.6 116 42.2
Hund18118 Selenicereus undatus HOM05D004536 ORTHO05D005628 7.3e-20 100.9 122 38.5
Migut.I00238 Erythranthe guttata HOM05D004536 ORTHO05D005628 2.8e-19 99.0 100 46.0
MSTRG.12600 Avicennia marina HOM05D004536 ORTHO05D005628 2.3e-18 95.9 124 36.3
Eucgr.H01185 Eucalyptus grandis HOM05D004536 ORTHO05D005628 6.8e-18 94.4 118 40.7
SMO198G0014 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 2.2e-16 89.4 57 70.2
Migut.I00234 Erythranthe guttata HOM05D004536 ORTHO05D005628 4.9e-16 88.2 100 43.0
SMO201G0239 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 4.1e-15 85.1 49 85.7
SMO271G0028 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 7.0e-15 84.3 50 78.0
Migut.I00246 Erythranthe guttata HOM05D004536 ORTHO05D005628 2.1e-14 82.8 78 48.7
MCO15G441 Micromonas commoda HOM05D004536 ORTHO05D005628 6.0e-14 81.3 102 44.1
Cre07.g355250 Chlamydomonas reinhardtii HOM05D004536 ORTHO05D005628 4.9e-08 61.6 150 29.3
EL10Ac8g19779 Beta vulgaris HOM05D004536 ORTHO05D005628 2.4e-07 59.3 118 31.4
MSTRG.18826 Avicennia marina HOM05D000137 ORTHO05D009307 7.1e-07 57.8 99 31.3
CAN.G115.7 Capsicum annuum HOM05D000738 ORTHO05D000675 7.1e-07 57.8 123 35.0
Phvul.001G172200 Phaseolus vulgaris HOM05D004536 ORTHO05D005628 9.2e-07 57.4 60 40.0
SMO361G0471 Selaginella moellendorffii HOM05D000059 ORTHO05D021246 9.2e-07 57.4 100 36.0
Cc01_g04480 Coffea canephora HOM05D000738 ORTHO05D000675 1.2e-06 57.0 101 36.6
Glyma.09G005500 Glycine max HOM05D000083 ORTHO05D000196 1.2e-06 57.0 116 28.4
SalBow6G2703 Salvia bowleyana HOM05D000137 ORTHO05D009307 1.6e-06 56.6 99 31.3
SalBow6G3410 Salvia bowleyana HOM05D000137 ORTHO05D009307 1.6e-06 56.6 99 31.3
Atru.chr5.1224 Acer truncatum HOM05D004536 ORTHO05D005628 2.1e-06 56.2 57 40.4
Ca_00581_v3 Cicer arietinum L. HOM05D004181 ORTHO05D005610 2.1e-06 56.2 117 29.9
Thhalv10005864m.g Eutrema salsugineum HOM05D000738 ORTHO05D000675 2.1e-06 56.2 101 36.6
Pp3c7_5070 Physcomitrium patens HOM05D004536 ORTHO05D021246 2.1e-06 56.2 112 33.9
AL5G46140 Arabidopsis lyrata HOM05D000738 ORTHO05D000675 2.7e-06 55.8 101 36.6
AT3G63280 Arabidopsis thaliana HOM05D000738 ORTHO05D000675 2.7e-06 55.8 101 36.6
CARHR291670 Cardamine hirsuta HOM05D000738 ORTHO05D000675 2.7e-06 55.8 101 36.6
Mapoly0070s0074 Marchantia polymorpha HOM05D004536 ORTHO05D021246 2.7e-06 55.8 111 33.3
Nitab4.5_0000452g0100 Nicotiana tabacum HOM05D000738 ORTHO05D000675 2.7e-06 55.8 123 35.0
PRCOL_00001413 Prasinoderma coloniale HOM05D004536 ORTHO05D021246 2.7e-06 55.8 104 34.6
Prupe.5G066500 Prunus persica HOM05D000084 ORTHO05D002305 2.7e-06 55.8 99 32.3
Sp5g00250 Schrenkiella parvula HOM05D000738 ORTHO05D000675 2.7e-06 55.8 103 36.9
PGSC0003DMG400033929 Solanum tuberosum HOM05D000738 ORTHO05D000675 2.7e-06 55.8 123 33.3
arahy.Tifrunner.gnm1.ann1.IUK1DM Arachis hypogaea HOM05D000738 ORTHO05D000675 3.5e-06 55.5 123 33.3
CSS0025822 Camellia sinensis var. sinensis HOM05D004536 ORTHO05D005628 3.5e-06 55.5 49 44.9
Sopen03g013600 Solanum pennellii HOM05D000738 ORTHO05D000675 3.5e-06 55.5 123 33.3
Ca_19498_v3 Cicer arietinum L. HOM05D000083 ORTHO05D000196 4.6e-06 55.1 116 31.0
ECA238G2310 Erigeron canadensis HOM05D000102 ORTHO05D002305 4.6e-06 55.1 99 30.3
Nitab4.5_0004063g0020 Nicotiana tabacum HOM05D000738 ORTHO05D000675 4.6e-06 55.1 123 35.8
Solyc06g083210.3 Solanum lycopersicum HOM05D000137 ORTHO05D009307 4.6e-06 55.1 100 30.0
BcaC04g18651 Brassica carinata HOM05D004181 ORTHO05D005610 6.0e-06 54.7 128 30.5
A03p09050 Brassica napus HOM05D004181 ORTHO05D005610 6.0e-06 54.7 126 31.0
C03p10540 Brassica napus HOM05D004181 ORTHO05D005610 6.0e-06 54.7 113 31.0
C09p57750 Brassica napus HOM05D004181 ORTHO05D005610 6.0e-06 54.7 128 30.5
BraA03t10229Z Brassica rapa HOM05D004181 ORTHO05D005610 6.0e-06 54.7 126 31.0
Migut.D02516 Erythranthe guttata HOM05D000137 ORTHO05D009307 6.0e-06 54.7 99 31.3
Medtr4g049730 Medicago truncatula HOM05D000083 ORTHO05D000196 6.0e-06 54.7 116 32.8
MCO13G426 Micromonas commoda HOM05D004536 ORTHO05D021246 6.0e-06 54.7 90 33.3
Solyc03g059250.3 Solanum lycopersicum HOM05D000738 ORTHO05D000675 6.0e-06 54.7 123 33.3
SGA_v2.0_scaffold247G44852 Striga asiatica HOM05D000738 ORTHO05D000675 6.0e-06 54.7 124 33.1
BcaB08g36651 Brassica carinata HOM05D004181 ORTHO05D005610 7.8e-06 54.3 126 31.0
A10p20860 Brassica napus HOM05D004181 ORTHO05D005610 7.8e-06 54.3 126 31.0
BraA10t44151Z Brassica rapa HOM05D004181 ORTHO05D005610 7.8e-06 54.3 126 31.0
Glyma.03G156800 Glycine max HOM05D000738 ORTHO05D000675 7.8e-06 54.3 100 36.0
Hma1.2p1_0226F.1_g095230 Hydrangea macrophylla HOM05D000137 ORTHO05D009307 7.8e-06 54.3 99 30.3
Lj3g0014627 Lotus japonicus HOM05D000083 ORTHO05D000196 7.8e-06 54.3 116 32.8
Manes.16G004500 Manihot esculenta HOM05D000083 ORTHO05D000196 7.8e-06 54.3 116 31.9
RcHm_v2.0_Chr5g0045731 Rosa chinensis HOM05D004536 ORTHO05D005628 7.8e-06 54.3 54 50.0
Sabra02G0040200 Salix brachista HOM05D000738 ORTHO05D000675 7.8e-06 54.3 100 36.0


User provided reference genes

Program Settings