Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1712.2 852 100.0
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1268.8 857 72.7
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1224.9 858 69.8
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1221.5 858 69.7
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1217.6 861 70.7
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1213.4 841 71.5
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1210.7 858 69.6
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1206.8 858 69.5
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1204.1 858 69.1
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1199.9 858 68.6
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1196.0 858 68.5
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1196.0 859 69.3
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1194.1 858 69.1
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1193.3 860 69.9
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1193.3 858 69.3
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1191.8 857 69.3
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1189.5 866 68.7
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1189.1 859 69.0
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1188.3 859 68.9
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1187.2 858 68.2
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1186.8 858 68.6
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1185.2 858 68.8
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1183.7 858 68.4
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1182.5 858 69.2
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1182.2 858 68.4
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1181.8 858 67.8
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1181.8 858 67.9
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1178.3 859 68.2
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1177.9 860 67.9
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1177.2 858 68.2
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1176.4 858 68.1
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1176.4 858 67.7
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1175.6 858 68.1
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1173.7 858 68.6
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1172.1 857 68.3
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1170.6 858 68.1
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1169.5 858 67.2
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1168.7 891 66.8
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1168.3 860 69.0
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1168.3 858 67.7
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1166.8 859 68.6
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1166.4 858 67.4
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1165.6 850 67.9
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1165.2 858 67.2
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1163.7 929 63.5
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1162.5 858 68.1
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1162.1 859 68.6
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1161.7 858 67.8
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1160.6 888 66.9
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1159.4 859 67.5
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1158.3 858 67.2
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1158.3 859 68.1
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1157.5 863 67.4
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1157.5 861 66.3
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1157.1 847 67.5
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1154.4 858 67.5
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1154.4 878 67.1
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1153.7 859 67.6
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1151.7 865 66.9
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1151.7 858 67.8
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1151.0 858 66.9
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1150.6 859 67.5
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1150.6 859 67.2
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1150.6 865 67.2
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1149.8 858 67.5
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1149.4 865 66.8
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1149.4 858 66.9
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1147.5 860 67.6
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1147.1 865 66.7
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1145.2 858 67.0
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1145.2 934 62.8
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1145.2 870 67.2
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1140.2 870 64.9
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1139.4 859 67.6
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1139.0 858 66.1
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1137.9 801 69.0
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1133.6 859 66.6
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1132.5 858 66.2
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1132.5 858 66.2
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1131.3 857 66.3
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1129.4 924 63.7
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1129.0 878 64.6
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1125.5 986 59.4
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1122.8 784 70.2
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1119.0 931 62.8
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1115.1 836 67.2
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1114.4 785 69.7
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1106.7 847 65.2
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1100.9 870 64.9
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1095.9 843 66.4
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1088.6 861 65.0
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1085.5 786 68.6
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1083.2 796 68.7
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 0.0e+00 1079.7 872 63.4
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 5.2e-311 1070.8 860 62.8
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 1.1e-308 1063.1 772 68.5
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 1.4e-308 1062.8 861 64.2
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 3.5e-307 1058.1 852 63.6
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 4.3e-305 1051.2 808 65.2
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 8.3e-301 1036.9 858 62.1
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 2.8e-296 1021.9 859 62.7
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 3.2e-292 1008.4 768 65.2
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 8.1e-288 993.8 755 66.2
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 2.1e-283 979.2 858 58.9
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 2.0e-278 962.6 717 67.2
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 2.5e-265 919.1 674 68.2
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 9.1e-239 830.9 864 52.8
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 2.2e-216 756.5 661 61.1
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 1.5e-212 743.8 561 65.1
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 2.7e-190 669.8 534 62.9
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 1.2e-177 627.9 438 72.1
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.9e-135 487.6 330 73.0
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 8.0e-110 402.5 307 63.8
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 2.2e-104 384.4 301 67.4
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 9.5e-95 352.4 255 69.4
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 2.0e-92 344.7 285 61.4
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 1.6e-81 308.5 213 70.9
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 1.1e-79 302.4 265 60.4
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 4.1e-74 283.9 391 44.8
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 1.4e-61 242.3 276 50.7
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 5.4e-58 230.3 201 60.7
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.5e-55 222.2 139 77.0
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 4.2e-50 204.1 140 71.4
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 5.6e-39 167.2 117 72.6
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 7.6e-36 156.8 94 77.7
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 7.9e-25 120.2 102 58.8
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 7.9e-25 120.2 122 50.8
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 1.8e-24 119.0 85 62.4
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 1.3e-22 112.8 82 69.5
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.8e-22 111.7 76 75.0
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 1.2e-17 96.3 63 76.2
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 2.7e-17 95.1 84 56.0
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 2.4e-13 82.0 84 54.8
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 4.1e-13 81.3 67 59.7
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 1.7e-11 75.9 74 56.8
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 3.3e-07 61.6 44 63.6
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.3e-06 59.7 42 71.4


User provided reference genes

Program Settings