Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0077 Selaginella moellendorffii HOM05D004391 ORTHO05D005193 9.7e-45 183.0 83 100.0
Aa31LG3G3850 Aethionema arabicum HOM05D004391 ORTHO05D005193 5.7e-13 77.4 66 51.5
BraA01t04219Z Brassica rapa HOM05D004391 ORTHO05D005193 3.7e-12 74.7 66 51.5
Thhalv10021877m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 3.7e-12 74.7 66 51.5
Sp3g09180 Schrenkiella parvula HOM05D004391 ORTHO05D005193 6.3e-12 73.9 66 51.5
AT3G10860 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 1.8e-11 72.4 66 50.0
Carub.0003s1010 Capsella rubella HOM05D004391 ORTHO05D005193 1.8e-11 72.4 66 50.0
CARHR085430 Cardamine hirsuta HOM05D004391 ORTHO05D005193 2.4e-11 72.0 66 48.5
THA.LOC104816504 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 2.4e-11 72.0 66 48.5
A05p38380 Brassica napus HOM05D004391 ORTHO05D005193 3.1e-11 71.6 66 50.0
C05p57280 Brassica napus HOM05D004391 ORTHO05D005193 3.1e-11 71.6 66 50.0
BolC5t34384H Brassica oleracea HOM05D004391 ORTHO05D005193 3.1e-11 71.6 66 50.0
BraA05t22629Z Brassica rapa HOM05D004391 ORTHO05D005193 3.1e-11 71.6 66 50.0
THA.LOC104823167 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 3.1e-11 71.6 66 47.0
THA.LOC109117202 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 3.1e-11 71.6 66 48.5
CiPaw.05G185700 Carya illinoinensis HOM05D004391 ORTHO05D005193 5.4e-11 70.9 66 50.0
AL3G22380 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 9.1e-11 70.1 66 48.5
CARHR207860 Cardamine hirsuta HOM05D004391 ORTHO05D005193 9.1e-11 70.1 66 50.0
FvH4_3g40960 Fragaria vesca HOM05D004391 ORTHO05D005193 9.1e-11 70.1 70 45.7
FAN11G0346 Fragaria x ananassa HOM05D004391 ORTHO05D005193 9.1e-11 70.1 70 45.7
FAN16G3113 Fragaria x ananassa HOM05D004391 ORTHO05D005193 9.1e-11 70.1 70 45.7
BolC1t05350H Brassica oleracea HOM05D004391 ORTHO05D005193 1.6e-10 69.3 66 50.0
Cfa009172 Carpinus fangiana HOM05D004391 ORTHO05D005193 1.6e-10 69.3 66 48.5
Thhalv10015197m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 1.6e-10 69.3 66 50.0
Nn5g27585 Nelumbo nucifera HOM05D004391 ORTHO05D005193 1.6e-10 69.3 70 45.7
Sp6g37680 Schrenkiella parvula HOM05D004391 ORTHO05D005193 1.6e-10 69.3 66 50.0
Aa31LG11G6460 Aethionema arabicum HOM05D004391 ORTHO05D005193 2.0e-10 68.9 66 48.5
BcaC06g32250 Brassica carinata HOM05D004391 ORTHO05D005193 2.0e-10 68.9 66 48.5
A10p30830 Brassica napus HOM05D004391 ORTHO05D005193 2.0e-10 68.9 66 48.5
C09p71330 Brassica napus HOM05D004391 ORTHO05D005193 2.0e-10 68.9 66 48.5
BolC9t59895H Brassica oleracea HOM05D004391 ORTHO05D005193 2.0e-10 68.9 66 48.5
BraA10t45125Z Brassica rapa HOM05D004391 ORTHO05D005193 2.0e-10 68.9 66 48.5
Medtr5g075690 Medicago truncatula HOM05D004391 ORTHO05D005193 2.0e-10 68.9 65 50.8
PGSC0003DMG400030477 Solanum tuberosum HOM05D004391 ORTHO05D005193 2.0e-10 68.9 66 50.0
FAN25G0672 Fragaria x ananassa HOM05D004391 ORTHO05D000090 3.5e-10 68.2 69 44.9
RcHm_v2.0_Chr5g0073771 Rosa chinensis HOM05D004391 ORTHO05D005193 3.5e-10 68.2 66 45.5
HPP92_000080 Vanilla planifolia HOM05D004391 ORTHO05D005193 3.5e-10 68.2 72 43.1
Solyc06g082680.4 Solanum lycopersicum HOM05D004391 ORTHO05D005193 4.5e-10 67.8 66 48.5
Sopen06g034070 Solanum pennellii HOM05D004391 ORTHO05D005193 4.5e-10 67.8 66 48.5
AL6G15270 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 5.9e-10 67.4 66 48.5
AT5G05370 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 5.9e-10 67.4 66 48.5
Duzib128G1816 Durio zibethinus HOM05D004391 ORTHO05D005193 5.9e-10 67.4 66 48.5
FAN21G2439 Fragaria x ananassa HOM05D004391 ORTHO05D005193 5.9e-10 67.4 69 44.9
Nitab4.5_0000105g0300 Nicotiana tabacum HOM05D004391 ORTHO05D005193 5.9e-10 67.4 66 47.0
A03p02270 Brassica napus HOM05D004391 ORTHO05D005193 7.7e-10 67.0 66 50.0
Thhalv10015196m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 7.7e-10 67.0 66 48.5
Peaxi162Scf00131g10129 Petunia axillaris HOM05D004391 ORTHO05D005193 7.7e-10 67.0 66 47.0
Sp6g37450 Schrenkiella parvula HOM05D004391 ORTHO05D005193 7.7e-10 67.0 66 48.5
HPP92_003137 Vanilla planifolia HOM05D004391 ORTHO05D005193 7.7e-10 67.0 70 44.3
BcaB01g05713 Brassica carinata HOM05D004391 ORTHO05D005193 1.0e-09 66.6 66 48.5
Carub.0006s0430 Capsella rubella HOM05D004391 ORTHO05D005193 1.0e-09 66.6 66 48.5
CANSAT80G1344 Cannabis sativa HOM05D004391 ORTHO05D005193 1.7e-09 65.9 66 47.0
TPR.G7542 Trifolium pratense HOM05D004391 ORTHO05D005193 1.7e-09 65.9 66 48.5
Os06g0175900 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 2.2e-09 65.5 70 44.3
Os06g0177000 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 2.2e-09 65.5 70 44.3
PGR142G4161 Punica granatum HOM05D004391 ORTHO05D005193 2.2e-09 65.5 66 45.5
Sc15g0002370 Simmondsia chinensis HOM05D004391 ORTHO05D005193 2.2e-09 65.5 70 42.9
Haze_12207 Corylus avellana HOM05D004391 ORTHO05D005193 2.9e-09 65.1 66 47.0
Nitab4.5_0003194g0030 Nicotiana tabacum HOM05D004391 ORTHO05D005193 2.9e-09 65.1 66 45.5
Cpa.g.sc2.267 Carica papaya HOM05D004391 ORTHO05D005193 3.8e-09 64.7 66 43.9
Glyma.02G237700 Glycine max HOM05D004391 ORTHO05D005193 3.8e-09 64.7 66 45.5
Pp3c7_21160 Physcomitrium patens HOM05D004391 ORTHO05D005193 3.8e-09 64.7 70 42.9
Potri.019G132000 Populus trichocarpa HOM05D004391 ORTHO05D005193 3.8e-09 64.7 66 45.5
CSS0038074 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 5.0e-09 64.3 70 42.9
Dinv12291 Davidia involucrata HOM05D000139 ORTHO05D000103 5.0e-09 64.3 69 43.5
Duzib114G0048 Durio zibethinus HOM05D004391 ORTHO05D005193 5.0e-09 64.3 66 45.5
Solyc06g007540.3 Solanum lycopersicum HOM05D004391 ORTHO05D005193 5.0e-09 64.3 66 45.5
Sopen06g002450 Solanum pennellii HOM05D004391 ORTHO05D005193 5.0e-09 64.3 66 45.5
arahy.Tifrunner.gnm1.ann1.M2MMUV Arachis hypogaea HOM05D004391 ORTHO05D005193 6.5e-09 63.9 66 47.0
Cc01_g15470 Coffea canephora HOM05D004391 ORTHO05D005193 6.5e-09 63.9 66 45.5
Nn5g26793 Nelumbo nucifera HOM05D004391 ORTHO05D005193 6.5e-09 63.9 70 42.9
Phvul.008G244100 Phaseolus vulgaris HOM05D004391 ORTHO05D005193 6.5e-09 63.9 66 45.5
TWI09G0083 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 6.5e-09 63.9 66 45.5
Zm00001eb375180 Zea mays HOM05D004391 ORTHO05D005193 6.5e-09 63.9 70 44.3
Glyma.14G206700 Glycine max HOM05D004391 ORTHO05D005193 8.5e-09 63.5 70 42.9
Nitab4.5_0000311g0070 Nicotiana tabacum HOM05D004391 ORTHO05D005193 8.5e-09 63.5 66 45.5
Prupe.6G038800 Prunus persica HOM05D004391 ORTHO05D005193 8.5e-09 63.5 66 45.5
QL03p059558 Quercus lobata HOM05D004391 ORTHO05D005193 8.5e-09 63.5 49 57.1
Ah.05g177740 Amaranthus hybridus HOM05D004391 ORTHO05D005193 1.1e-08 63.2 70 41.4
Eucgr.G03166 Eucalyptus grandis HOM05D004391 ORTHO05D005193 1.1e-08 63.2 66 45.5
Gohir.A05G404700 Gossypium hirsutum HOM05D004391 ORTHO05D005193 1.1e-08 63.2 66 45.5
Manes.18G125100 Manihot esculenta HOM05D004391 ORTHO05D005193 1.1e-08 63.2 66 43.9
Peaxi162Scf00455g00003 Petunia axillaris HOM05D004391 ORTHO05D005193 1.1e-08 63.2 66 45.5
Pp3c11_2590 Physcomitrium patens HOM05D004391 ORTHO05D005193 1.1e-08 63.2 70 41.4
TWI53G1180 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 1.1e-08 63.2 66 45.5
AagrBONN_evm.TU.Sc2ySwM_362.2485 Anthoceros agrestis HOM05D004391 ORTHO05D005193 1.5e-08 62.8 70 45.7
Gohir.A13G008200 Gossypium hirsutum HOM05D004391 ORTHO05D005193 1.5e-08 62.8 66 45.5
Gohir.D04G011000 Gossypium hirsutum HOM05D004391 ORTHO05D005193 1.5e-08 62.8 66 45.5
Gohir.D13G008800 Gossypium hirsutum HOM05D004391 ORTHO05D005193 1.5e-08 62.8 66 45.5
Lsat_1_v5_gn_8_98901 Lactuca sativa HOM05D004391 ORTHO05D005193 1.5e-08 62.8 68 45.6
Oeu025053.1 Olea europaea HOM05D004391 ORTHO05D005193 1.5e-08 62.8 66 43.9
Pp3c1_1570 Physcomitrium patens HOM05D004391 ORTHO05D005193 1.5e-08 62.8 70 41.4
FvH4_4g32870 Fragaria vesca HOM05D004391 ORTHO05D005193 1.9e-08 62.4 70 41.4
FAN12G3281 Fragaria x ananassa HOM05D004391 ORTHO05D005193 1.9e-08 62.4 70 41.4
MD03G1047800 Malus domestica HOM05D004391 ORTHO05D005193 1.9e-08 62.4 70 41.4
TAR369G0568 Trochodendron aralioides HOM05D004391 ORTHO05D005193 1.9e-08 62.4 70 41.4
GSVIVG01024232001 Vitis vinifera HOM05D004391 ORTHO05D005193 1.9e-08 62.4 70 42.9
CSS0036971 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 2.5e-08 62.0 70 40.0
CBR_g1035 Chara braunii HOM05D004391 ORTHO05D005193 2.5e-08 62.0 70 41.4
Ciclev10033444m.g Citrus clementina HOM05D004391 ORTHO05D005193 2.5e-08 62.0 77 41.6
MD13G1094500 Malus domestica HOM05D004391 ORTHO05D005193 2.5e-08 62.0 70 41.4
CAN.G874.64 Capsicum annuum HOM05D004391 ORTHO05D005193 3.2e-08 61.6 66 47.0
AUR62023375 Chenopodium quinoa HOM05D004391 ORTHO05D005193 3.2e-08 61.6 70 41.4
FvH4_4g07960 Fragaria vesca HOM05D004391 ORTHO05D005193 3.2e-08 61.6 70 41.4
FAN07G1869 Fragaria x ananassa HOM05D004391 ORTHO05D005193 3.2e-08 61.6 70 41.4
FAN17G0118 Fragaria x ananassa HOM05D004391 ORTHO05D005193 3.2e-08 61.6 70 41.4
FAN22G1549 Fragaria x ananassa HOM05D004391 ORTHO05D005193 3.2e-08 61.6 70 41.4
Hma1.2p1_0170F.1_g075340 Hydrangea macrophylla HOM05D004391 ORTHO05D005193 3.2e-08 61.6 70 38.6
RcHm_v2.0_Chr4g0441891 Rosa chinensis HOM05D004391 ORTHO05D005193 3.2e-08 61.6 66 42.4
TAR633G0676 Trochodendron aralioides HOM05D004391 ORTHO05D005193 3.2e-08 61.6 69 42.0
GSVIVG01024535001 Vitis vinifera HOM05D004391 ORTHO05D005193 3.2e-08 61.6 70 41.4
Gorai.012G013200 Gossypium raimondii HOM05D004391 ORTHO05D005193 4.2e-08 61.2 65 44.6
LjContig00141g0006354 Lotus japonicus HOM05D004391 ORTHO05D005193 4.2e-08 61.2 66 45.5
Thecc.10G186500 Theobroma cacao HOM05D004391 ORTHO05D005193 4.2e-08 61.2 65 43.1
Aa31LG3G4110 Aethionema arabicum HOM05D004391 ORTHO05D005193 5.5e-08 60.8 87 41.4
Ciclev10010097m.g Citrus clementina HOM05D004391 ORTHO05D005193 5.5e-08 60.8 66 43.9
unitig_747.g21439 Utricularia gibba HOM05D001024 ORTHO05D000878 5.5e-08 60.8 84 39.3
AUR62013781 Chenopodium quinoa HOM05D004391 ORTHO05D005193 7.2e-08 60.5 70 41.4
Lalb_Chr04g0251641 Lupinus albus HOM05D004391 ORTHO05D005193 7.2e-08 60.5 67 43.3
Lalb_Chr10g0103971 Lupinus albus HOM05D004391 ORTHO05D005193 7.2e-08 60.5 67 43.3
MD16G1095600 Malus domestica HOM05D004391 ORTHO05D005193 7.2e-08 60.5 70 40.0
CAN.G181.27 Capsicum annuum HOM05D004391 ORTHO05D005193 1.6e-07 59.3 66 43.9
ECA248G3374 Erigeron canadensis HOM05D004391 ORTHO05D005193 1.6e-07 59.3 70 41.4
SHI19278 Sapria himalayana HOM05D004391 ORTHO05D005193 2.1e-07 58.9 63 50.8
BcaB04g21171 Brassica carinata HOM05D004391 ORTHO05D005193 2.7e-07 58.5 55 47.3
ClCG08G017940 Citrullus lanatus HOM05D004391 ORTHO05D005193 2.7e-07 58.5 66 42.4
MELO3C010670.2 Cucumis melo HOM05D004391 ORTHO05D005193 2.7e-07 58.5 66 42.4
Lsat_1_v5_gn_9_13340 Lactuca sativa HOM05D004391 ORTHO05D005193 2.7e-07 58.5 63 49.2
Prupe.1G250900 Prunus persica HOM05D004391 ORTHO05D005193 3.6e-07 58.2 66 40.9
vmacro02862 Vaccinium macrocarpon HOM05D004391 ORTHO05D005193 3.6e-07 58.2 55 54.5
Ciclev10013576m.g Citrus clementina HOM05D004391 ORTHO05D005193 4.7e-07 57.8 66 42.4
Lsat_1_v5_gn_8_98921 Lactuca sativa HOM05D004391 ORTHO05D005193 4.7e-07 57.8 55 50.9
Nitab4.5_0002167g0040 Nicotiana tabacum HOM05D004391 ORTHO05D005193 4.7e-07 57.8 49 55.1
Nitab4.5_0002902g0130 Nicotiana tabacum HOM05D004391 ORTHO05D005193 4.7e-07 57.8 49 55.1
HanXRQChr05g0158631 Helianthus annuus HOM05D004391 ORTHO05D005193 6.1e-07 57.4 70 40.0
Potri.013G159700 Populus trichocarpa HOM05D004391 ORTHO05D005193 6.1e-07 57.4 51 56.9
PRCOL_00006067 Prasinoderma coloniale HOM05D004391 ORTHO05D005193 6.1e-07 57.4 70 40.0
Aqoxy2G00689 Aquilegia oxysepala HOM05D004391 ORTHO05D005193 8.0e-07 57.0 66 39.4
ECA236G4577 Erigeron canadensis HOM05D004391 ORTHO05D005193 8.0e-07 57.0 70 40.0
PGSC0003DMG400020649 Solanum tuberosum HOM05D004391 ORTHO05D005193 1.0e-06 56.6 37 70.3
Lsat_1_v5_gn_5_177220 Lactuca sativa HOM05D004391 ORTHO05D005193 1.4e-06 56.2 69 40.6
THA.LOC104823179 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 1.4e-06 56.2 37 67.6
COL.COLO4_19488 Corchorus olitorius HOM05D004391 ORTHO05D005193 1.8e-06 55.8 66 39.4
Gorai.013G009600 Gossypium raimondii HOM05D004391 ORTHO05D005193 1.8e-06 55.8 49 55.1
Lsat_1_v5_gn_9_13380 Lactuca sativa HOM05D000838 ORTHO05D000656 1.8e-06 55.8 55 50.9
Zm00001eb281780 Zea mays HOM05D004391 ORTHO05D005193 4.0e-06 54.7 53 49.1
BcaB05g21720 Brassica carinata HOM05D004391 ORTHO05D005193 5.2e-06 54.3 61 47.5
HanXRQChr10g0292911 Helianthus annuus HOM05D004391 ORTHO05D005193 5.2e-06 54.3 70 35.7
SalBow3G4275 Salvia bowleyana HOM05D004391 ORTHO05D005193 6.8e-06 53.9 41 56.1


User provided reference genes

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