Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 1.7e-102 375.9 184 100.0
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 4.3e-85 318.2 184 88.0
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 6.9e-51 204.5 184 56.0
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 8.4e-49 197.6 184 53.3
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 3.0e-38 162.5 135 57.0
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 3.1e-35 152.5 119 62.2
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 9.7e-29 131.0 183 39.9
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 9.7e-29 131.0 183 39.9
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 2.4e-27 126.3 184 37.5
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 3.1e-27 125.9 184 37.0
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 3.1e-27 125.9 184 36.4
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 5.3e-27 125.2 184 37.0
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 5.3e-27 125.2 184 36.4
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 5.3e-27 125.2 183 37.2
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 6.9e-27 124.8 184 37.0
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 9.0e-27 124.4 184 38.0
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 1.2e-26 124.0 200 34.0
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 1.5e-26 123.6 189 34.4
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 2.0e-26 123.2 184 39.1
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 2.0e-26 123.2 184 35.3
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 3.4e-26 122.5 183 37.2
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 7.7e-26 121.3 184 35.3
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 1.3e-25 120.6 184 36.4
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 1.7e-25 120.2 183 35.5
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 2.2e-25 119.8 166 39.2
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 3.8e-25 119.0 184 34.8
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 6.5e-25 118.2 184 35.9
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 6.5e-25 118.2 184 38.0
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 6.5e-25 118.2 184 35.9
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 8.5e-25 117.9 184 35.9
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 8.5e-25 117.9 184 35.9
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 1.1e-24 117.5 184 35.9
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 1.4e-24 117.1 183 34.4
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 1.4e-24 117.1 184 36.4
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 1.9e-24 116.7 184 37.0
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 5.5e-24 115.2 184 34.8
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 7.2e-24 114.8 150 42.0
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 7.2e-24 114.8 184 34.2
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 9.4e-24 114.4 184 34.2
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 9.4e-24 114.4 184 34.2
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 9.4e-24 114.4 134 43.3
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 9.4e-24 114.4 134 43.3
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 9.4e-24 114.4 184 35.3
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 1.2e-23 114.0 134 43.3
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 1.2e-23 114.0 184 32.6
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 1.6e-23 113.6 184 33.7
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.6e-23 113.6 184 33.7
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 1.6e-23 113.6 184 34.8
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 1.6e-23 113.6 184 34.2
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 2.1e-23 113.2 164 37.2
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 7.9e-23 111.3 184 34.8
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 7.9e-23 111.3 164 37.2
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 1.0e-22 110.9 131 42.0
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 1.0e-22 110.9 184 35.3
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 1.0e-22 110.9 164 37.2
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 2.3e-22 109.8 184 32.6
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 3.0e-22 109.4 185 35.1
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 3.0e-22 109.4 153 38.6
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 1.1e-21 107.5 184 37.5
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.5e-21 107.1 184 32.6
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.5e-21 107.1 132 38.6
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 2.0e-21 106.7 184 32.1
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 2.0e-21 106.7 184 32.1
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 2.0e-21 106.7 192 34.4
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 2.0e-21 106.7 184 34.2
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 2.0e-21 106.7 179 34.6
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 2.5e-21 106.3 141 41.1
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 4.3e-21 105.5 184 32.6
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 4.3e-21 105.5 125 42.4
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 4.3e-21 105.5 162 36.4
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 5.7e-21 105.1 184 33.2
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 9.7e-21 104.4 162 35.8
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 1.3e-20 104.0 184 32.6
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 1.3e-20 104.0 184 32.6
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 1.3e-20 104.0 184 33.2
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 2.2e-20 103.2 185 33.0
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 2.2e-20 103.2 142 39.4
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 2.8e-20 102.8 184 32.1
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 4.8e-20 102.1 184 32.1
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 6.3e-20 101.7 184 32.1
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 8.2e-20 101.3 184 32.6
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 8.2e-20 101.3 184 32.1
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 8.2e-20 101.3 184 31.5
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 1.1e-19 100.9 184 31.5
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.4e-19 100.5 184 31.0
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 1.8e-19 100.1 184 31.0
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 1.8e-19 100.1 185 32.4
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 1.8e-19 100.1 185 34.1
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 2.4e-19 99.8 184 31.5
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 2.4e-19 99.8 185 31.9
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 2.4e-19 99.8 184 31.0
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 2.4e-19 99.8 184 31.0
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 2.4e-19 99.8 162 35.2
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 3.1e-19 99.4 184 31.0
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 3.1e-19 99.4 184 31.0
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 3.1e-19 99.4 184 31.0
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 3.1e-19 99.4 184 31.0
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 3.1e-19 99.4 184 31.0
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 4.1e-19 99.0 184 30.4
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 4.1e-19 99.0 184 30.4
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 4.1e-19 99.0 184 30.4
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 1.2e-18 97.4 183 31.7
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 1.2e-18 97.4 184 31.0
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 2.0e-18 96.7 184 29.3
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 2.6e-18 96.3 196 30.1
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 3.4e-18 95.9 184 30.4
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 3.4e-18 95.9 183 31.7
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 1.3e-17 94.0 133 38.3
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 1.3e-17 94.0 138 36.2
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.7e-17 93.6 184 29.9
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 1.7e-17 93.6 184 31.0
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 5.0e-17 92.0 138 34.8
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 5.0e-17 92.0 135 35.6
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 6.5e-17 91.7 131 35.9
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 8.5e-17 91.3 170 32.4
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 1.1e-16 90.9 131 35.1
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 1.4e-16 90.5 184 28.8
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 2.5e-16 89.7 141 33.3
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 3.2e-16 89.4 137 35.8
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 3.2e-16 89.4 183 31.1
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 4.2e-16 89.0 141 34.8
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 7.2e-16 88.2 143 37.8
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 1.2e-15 87.4 184 31.5
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 2.7e-15 86.3 132 35.6
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 2.7e-15 86.3 132 35.6
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 4.7e-15 85.5 137 34.3
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 7.9e-15 84.7 133 34.6
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 3.0e-14 82.8 94 42.6
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 3.0e-14 82.8 178 27.5
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 3.9e-14 82.4 143 33.6
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 3.9e-14 82.4 131 33.6
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 5.1e-14 82.0 131 33.6
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 6.7e-14 81.6 133 33.1
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 1.5e-13 80.5 131 32.8
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 2.0e-13 80.1 144 33.3
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 3.3e-13 79.3 189 29.1
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 5.7e-13 78.6 139 32.4
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 2.8e-12 76.3 97 41.2
SEGI_34722 Sequoiadendron giganteum HOM05D001775 ORTHO05D006205 5.3e-11 72.0 48 62.5
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 4.5e-10 68.9 81 38.3


User provided reference genes

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