Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.7e-129 465.3 231 100.0
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 9.2e-61 237.7 269 55.0
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 7.4e-26 121.7 264 34.1
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.3e-25 120.9 246 35.8
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 1.3e-25 120.9 246 35.8
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 2.8e-25 119.8 257 34.6
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 6.2e-25 118.6 258 35.3
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 1.1e-24 117.9 257 35.0
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.1e-24 117.9 221 37.6
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.4e-24 117.5 257 35.0
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 1.4e-24 117.5 257 35.0
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.8e-24 117.1 257 35.0
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 2.4e-24 116.7 258 34.1
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 4.0e-24 115.9 257 34.2
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 5.3e-24 115.5 246 35.0
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 5.3e-24 115.5 250 34.4
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 6.9e-24 115.2 269 33.8
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 6.9e-24 115.2 246 34.6
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 6.9e-24 115.2 246 34.6
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 9.0e-24 114.8 247 34.0
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 9.0e-24 114.8 257 33.9
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 9.0e-24 114.8 251 33.9
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 9.0e-24 114.8 246 34.1
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 9.0e-24 114.8 257 33.9
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 1.2e-23 114.4 257 33.9
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 1.2e-23 114.4 250 35.2
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 1.2e-23 114.4 247 34.8
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 2.0e-23 113.6 258 34.1
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 2.0e-23 113.6 258 34.5
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 2.0e-23 113.6 263 33.1
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 2.0e-23 113.6 247 33.6
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 2.6e-23 113.2 258 34.1
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.6e-23 113.2 246 34.1
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.6e-23 113.2 246 34.1
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 2.6e-23 113.2 250 34.4
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 3.4e-23 112.8 255 34.5
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 3.4e-23 112.8 246 33.7
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 3.4e-23 112.8 247 33.2
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 3.4e-23 112.8 263 31.9
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 4.5e-23 112.5 247 33.6
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 4.5e-23 112.5 247 33.6
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 5.8e-23 112.1 242 34.3
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 5.8e-23 112.1 257 32.7
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 5.8e-23 112.1 257 33.9
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 7.6e-23 111.7 247 33.2
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 7.6e-23 111.7 247 33.2
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 7.6e-23 111.7 250 35.2
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 7.6e-23 111.7 258 34.5
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 7.6e-23 111.7 257 33.9
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 9.9e-23 111.3 245 34.7
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 9.9e-23 111.3 250 33.6
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 9.9e-23 111.3 265 32.5
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 9.9e-23 111.3 247 33.2
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 9.9e-23 111.3 245 34.3
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 9.9e-23 111.3 247 33.6
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 1.3e-22 110.9 258 33.3
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 1.3e-22 110.9 242 34.7
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 1.3e-22 110.9 247 33.6
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.3e-22 110.9 242 34.7
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 1.7e-22 110.5 246 33.7
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 2.2e-22 110.2 258 32.6
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 2.9e-22 109.8 247 32.8
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 2.9e-22 109.8 246 33.3
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 3.8e-22 109.4 244 34.4
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 3.8e-22 109.4 242 33.1
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 4.9e-22 109.0 257 34.2
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 4.9e-22 109.0 257 32.7
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 6.4e-22 108.6 246 31.7
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 6.4e-22 108.6 247 32.8
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 6.4e-22 108.6 247 32.8
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 6.4e-22 108.6 242 33.5
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 6.4e-22 108.6 242 33.9
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 8.4e-22 108.2 247 32.4
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 8.4e-22 108.2 247 32.4
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 8.4e-22 108.2 252 32.9
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 8.4e-22 108.2 242 33.5
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 8.4e-22 108.2 257 32.3
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 8.4e-22 108.2 155 43.2
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 1.1e-21 107.8 246 33.3
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.1e-21 107.8 250 34.4
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 1.1e-21 107.8 242 33.5
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.4e-21 107.5 243 33.3
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 1.9e-21 107.1 253 33.2
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 2.5e-21 106.7 262 31.7
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 2.5e-21 106.7 242 33.1
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 2.5e-21 106.7 258 32.9
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 2.5e-21 106.7 242 33.9
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 3.2e-21 106.3 263 31.6
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 3.2e-21 106.3 260 32.7
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.2e-21 106.3 246 32.5
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 3.2e-21 106.3 246 32.1
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 4.2e-21 105.9 242 33.1
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 4.2e-21 105.9 246 32.1
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 9.3e-21 104.8 242 33.5
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 9.3e-21 104.8 242 32.6
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 9.3e-21 104.8 242 32.6
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 1.2e-20 104.4 269 31.6
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.2e-20 104.4 251 33.9
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 1.6e-20 104.0 254 31.1
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 2.7e-20 103.2 258 32.2
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 2.7e-20 103.2 246 31.7
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 2.7e-20 103.2 256 31.6
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 4.6e-20 102.4 148 43.2
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 4.6e-20 102.4 247 31.6
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 7.9e-20 101.7 246 31.7
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 7.9e-20 101.7 264 29.9
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.8e-19 100.5 256 31.6
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.3e-19 100.1 257 32.7
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 2.3e-19 100.1 242 31.0
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 3.0e-19 99.8 246 32.9
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 3.9e-19 99.4 297 30.6
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 8.7e-19 98.2 241 32.8
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 8.7e-19 98.2 133 42.9
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.5e-18 97.4 245 32.7
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 1.9e-18 97.1 133 43.6
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.5e-18 96.7 150 42.0
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 2.5e-18 96.7 164 39.6
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 2.5e-18 96.7 244 33.2
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 7.4e-18 95.1 133 43.6
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.6e-17 94.0 256 32.8
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 2.1e-17 93.6 251 30.7
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 3.7e-17 92.8 133 42.1
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 1.1e-16 91.3 186 34.4
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 1.4e-16 90.9 145 42.8
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.8e-16 90.5 183 33.3
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 3.1e-16 89.7 148 39.2
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 4.0e-16 89.4 125 43.2
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 2.0e-15 87.0 82 56.1
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 2.6e-15 86.7 160 35.0
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 2.9e-14 83.2 69 59.4
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 6.5e-14 82.0 85 52.9
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.3e-11 73.6 116 40.5
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 3.9e-11 72.8 70 48.6


User provided reference genes

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