Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 4.3e-167 591.3 304 100.0
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 3.3e-82 309.3 306 52.3
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 9.5e-82 307.8 313 51.8
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 3.6e-81 305.8 306 51.6
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 4.0e-80 302.4 306 50.3
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 6.8e-80 301.6 307 51.5
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.2e-79 300.8 306 49.7
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.0e-79 300.1 306 49.3
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 3.4e-79 299.3 306 50.0
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 1.7e-78 297.0 305 50.5
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 1.7e-78 297.0 308 49.7
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 4.9e-78 295.4 306 50.0
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 8.3e-78 294.7 309 50.8
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 8.3e-78 294.7 309 48.2
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 8.3e-78 294.7 311 47.9
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 3.2e-77 292.7 306 49.7
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 7.1e-77 291.6 306 48.0
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 9.2e-77 291.2 308 50.3
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.1e-76 290.0 308 48.7
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 2.1e-76 290.0 306 47.7
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 4.6e-76 288.9 308 48.4
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 4.6e-76 288.9 310 48.4
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 7.8e-76 288.1 308 48.4
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 7.8e-76 288.1 309 47.2
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 1.0e-75 287.7 308 48.4
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 1.3e-75 287.3 311 48.9
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 1.3e-75 287.3 305 49.2
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 3.0e-75 286.2 310 47.7
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 5.1e-75 285.4 306 48.4
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 5.1e-75 285.4 308 48.4
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 6.6e-75 285.0 308 47.4
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 6.6e-75 285.0 308 46.8
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 6.6e-75 285.0 312 50.3
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 6.6e-75 285.0 310 47.4
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 8.6e-75 284.6 318 46.2
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 8.6e-75 284.6 306 48.7
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 1.5e-74 283.9 312 47.1
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 1.5e-74 283.9 306 48.7
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.9e-74 283.5 314 47.5
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 1.9e-74 283.5 305 48.2
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 2.5e-74 283.1 309 47.2
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 2.5e-74 283.1 310 48.7
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 2.5e-74 283.1 305 47.9
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 2.5e-74 283.1 312 50.3
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 2.5e-74 283.1 308 48.1
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 3.3e-74 282.7 310 47.1
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 3.3e-74 282.7 306 47.1
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 4.3e-74 282.3 302 47.4
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 7.3e-74 281.6 308 46.8
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 7.3e-74 281.6 309 46.6
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 7.3e-74 281.6 309 46.6
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 7.3e-74 281.6 305 48.2
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 7.3e-74 281.6 308 46.4
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 9.6e-74 281.2 307 47.6
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 9.6e-74 281.2 310 47.1
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 1.2e-73 280.8 309 47.6
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 1.2e-73 280.8 302 47.7
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 1.2e-73 280.8 307 47.6
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 1.2e-73 280.8 308 49.0
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 1.6e-73 280.4 311 45.7
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 2.1e-73 280.0 308 46.8
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 2.1e-73 280.0 310 46.8
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 3.6e-73 279.3 306 46.7
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 3.6e-73 279.3 308 47.4
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 4.7e-73 278.9 305 47.5
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 4.7e-73 278.9 305 48.9
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 6.2e-73 278.5 307 46.6
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 8.1e-73 278.1 309 46.9
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 1.1e-72 277.7 308 47.1
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 3.1e-72 276.2 308 46.8
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 3.1e-72 276.2 315 46.7
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 4.0e-72 275.8 308 46.8
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 8.9e-72 274.6 308 46.8
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.2e-71 274.2 304 46.7
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 1.5e-71 273.9 316 46.5
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.0e-71 273.5 309 46.6
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 2.6e-71 273.1 306 46.4
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 1.7e-70 270.4 310 44.8
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 3.8e-70 269.2 310 44.5
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 1.1e-69 267.7 307 46.3
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 4.2e-69 265.8 313 43.8
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 5.4e-69 265.4 309 45.0
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 5.4e-69 265.4 308 46.4
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 9.3e-69 264.6 308 44.8
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 2.1e-68 263.5 307 45.9
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 3.9e-67 259.2 307 44.6
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 5.1e-67 258.8 307 44.0
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 8.7e-67 258.1 308 43.8
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 1.1e-66 257.7 307 44.6
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 1.1e-66 257.7 307 43.6
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 1.5e-66 257.3 307 44.0
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 1.9e-66 256.9 307 45.0
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 2.5e-66 256.5 307 45.0
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 2.5e-66 256.5 307 44.3
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 3.3e-66 256.1 307 44.0
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 3.3e-66 256.1 307 44.3
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 4.3e-66 255.8 307 43.3
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 4.3e-66 255.8 353 41.9
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 7.3e-66 255.0 305 44.6
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 1.6e-65 253.8 309 43.0
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 2.1e-65 253.4 263 50.2
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 3.6e-65 252.7 308 44.5
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 3.6e-65 252.7 320 42.8
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 8.1e-65 251.5 307 43.3
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 1.4e-64 250.8 307 44.3
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 4.0e-64 249.2 308 44.8
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 1.2e-63 247.7 304 44.4
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 4.4e-63 245.7 290 44.5
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 2.9e-62 243.0 315 44.1
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 8.4e-62 241.5 299 44.5
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 2.4e-61 240.0 309 41.1
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 4.6e-60 235.7 284 43.3
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 6.0e-60 235.3 295 43.7
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 3.3e-58 229.6 356 39.3
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 5.6e-58 228.8 283 44.9
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 4.8e-57 225.7 250 47.2
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 8.1e-57 224.9 401 36.4
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.9e-54 216.5 306 39.5
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 8.4e-54 214.9 265 46.0
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 4.2e-53 212.6 313 39.6
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 1.2e-52 211.1 301 39.5
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 2.1e-52 210.3 251 43.8
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 7.9e-52 208.4 264 41.3
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 2.3e-51 206.8 288 39.9
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 7.6e-47 191.8 196 50.0
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 4.9e-46 189.1 202 48.0
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 2.5e-45 186.8 231 42.0
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.6e-44 184.1 257 40.5
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 6.0e-44 182.2 527 28.1
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 3.0e-43 179.9 189 46.6
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 6.5e-38 162.2 196 45.9
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 7.4e-34 148.7 163 46.0
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 1.6e-33 147.5 144 52.1
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 6.5e-30 135.6 331 30.5
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 2.6e-18 97.1 87 56.3
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 4.8e-17 92.8 86 51.2
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 1.1e-16 91.7 81 55.6
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 1.2e-15 88.2 80 52.5
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.9e-13 80.9 75 46.7
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.2e-13 80.1 93 40.9
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 3.2e-13 80.1 93 40.9
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 3.6e-12 76.6 55 65.5
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 3.6e-12 76.6 53 67.9
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 1.7e-09 67.8 56 53.6
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 2.8e-09 67.0 122 38.5
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 7.0e-08 62.4 80 35.0
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 5.9e-07 59.3 50 64.0


User provided reference genes

Program Settings