Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 7.4e-234 813.5 420 100.0
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 1.6e-119 433.7 419 54.7
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 2.0e-114 416.8 411 54.0
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 8.5e-113 411.4 410 53.7
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 2.2e-108 396.7 411 52.6
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 1.4e-107 394.0 418 50.7
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 1.5e-106 390.6 409 50.9
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 2.6e-106 389.8 419 50.4
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 2.6e-106 389.8 417 50.4
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 3.4e-106 389.4 411 50.9
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 3.4e-106 389.4 409 51.1
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 7.7e-106 388.3 417 51.6
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 1.3e-105 387.5 419 51.1
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 3.8e-105 386.0 412 50.5
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 8.5e-105 384.8 412 50.5
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 2.5e-104 383.3 419 49.9
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 2.5e-104 383.3 410 50.7
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 3.2e-104 382.9 416 50.0
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 5.5e-104 382.1 419 49.6
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 7.2e-104 381.7 410 50.5
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 1.2e-103 380.9 412 49.8
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 1.6e-103 380.6 383 54.6
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 2.7e-103 379.8 419 49.6
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 3.6e-103 379.4 411 50.1
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 3.6e-103 379.4 409 50.4
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 6.1e-103 378.6 419 48.9
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 1.8e-102 377.1 410 49.5
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 1.8e-102 377.1 416 49.5
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 3.9e-102 375.9 411 50.1
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 3.9e-102 375.9 414 49.0
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 3.9e-102 375.9 409 49.1
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 3.9e-102 375.9 409 49.9
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 5.1e-102 375.6 411 49.9
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 5.1e-102 375.6 409 48.9
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 6.7e-102 375.2 409 49.1
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 1.1e-101 374.4 416 51.0
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 1.1e-101 374.4 414 48.1
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 1.1e-101 374.4 414 50.5
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 1.5e-101 374.0 414 48.3
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 1.5e-101 374.0 414 48.3
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.5e-101 374.0 415 50.1
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 1.5e-101 374.0 409 50.1
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 3.3e-101 372.9 411 49.4
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 4.4e-101 372.5 409 49.6
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 5.7e-101 372.1 410 48.3
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 9.7e-101 371.3 407 48.9
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 9.7e-101 371.3 411 49.1
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 1.3e-100 370.9 407 50.4
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 1.7e-100 370.5 411 50.4
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 2.2e-100 370.2 408 48.5
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 2.8e-100 369.8 405 49.9
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 2.8e-100 369.8 413 47.5
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 4.8e-100 369.0 410 49.3
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 4.8e-100 369.0 410 48.8
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 4.8e-100 369.0 409 49.1
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 1.1e-99 367.9 415 48.0
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 2.4e-99 366.7 418 47.4
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 2.4e-99 366.7 413 50.1
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 4.1e-99 365.9 414 48.8
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 6.9e-99 365.2 408 48.8
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 9.1e-99 364.8 414 46.9
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 9.1e-99 364.8 412 48.8
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 1.2e-98 364.4 409 48.4
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 2.0e-98 363.6 414 46.6
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 4.5e-98 362.5 409 49.1
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 1.7e-97 360.5 419 47.3
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 2.2e-97 360.1 410 48.0
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 3.8e-97 359.4 448 45.5
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 5.0e-97 359.0 408 48.3
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 6.5e-97 358.6 437 46.9
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 8.5e-97 358.2 450 46.7
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 8.5e-97 358.2 412 48.1
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.1e-96 357.8 417 49.6
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 1.4e-96 357.5 408 47.1
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 1.9e-96 357.1 412 48.1
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 4.2e-96 355.9 417 49.4
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 1.2e-95 354.4 409 48.2
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 4.7e-95 352.4 407 46.7
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 6.1e-95 352.1 409 47.2
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 5.2e-94 349.0 415 47.7
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 2.6e-93 346.7 378 50.5
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 9.7e-93 344.7 430 45.6
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 1.3e-92 344.4 451 45.7
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 2.2e-92 343.6 412 45.1
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 8.2e-92 341.7 472 44.5
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 8.2e-92 341.7 408 46.1
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 9.1e-91 338.2 407 45.9
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 1.1e-88 331.3 379 49.1
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 1.6e-87 327.4 460 43.5
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 6.3e-84 315.5 347 49.0
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 1.4e-83 314.3 415 45.5
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 1.2e-82 311.2 462 40.5
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 1.0e-78 298.1 332 49.1
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.3e-76 291.2 347 46.7
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 2.8e-76 290.0 348 46.3
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 3.5e-74 283.1 377 43.5
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 1.9e-72 277.3 298 50.3
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 2.1e-71 273.9 331 46.5
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 2.8e-71 273.5 314 47.1
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 4.9e-68 262.7 309 46.9
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 1.4e-67 261.2 308 46.8
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 4.1e-67 259.6 304 46.7
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 4.1e-67 259.6 310 45.8
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 4.5e-66 256.1 297 47.5
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 2.0e-58 230.7 335 40.6
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 8.0e-55 218.8 445 37.1
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 2.3e-54 217.2 237 48.1
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 5.4e-51 206.1 159 63.5
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 2.7e-50 203.8 240 46.2
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 2.3e-46 190.7 186 50.5
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 4.0e-46 189.9 220 47.3
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 9.9e-45 185.3 412 34.5
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 7.1e-43 179.1 249 41.8
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 1.3e-41 174.9 163 57.1
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 8.6e-41 172.2 361 34.1
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 1.6e-39 167.9 159 56.6
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 2.8e-39 167.2 155 54.8
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 1.7e-36 157.9 156 54.5
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 1.8e-30 137.9 444 30.4
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 1.8e-30 137.9 256 35.9
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 3.2e-27 127.1 452 29.0
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 7.1e-27 125.9 432 27.1
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 1.3e-23 115.2 138 43.5
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 1.6e-23 114.8 437 27.5
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 9.0e-22 109.0 165 42.4
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 3.4e-21 107.1 83 63.9
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 7.6e-21 105.9 329 29.2
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 2.7e-18 97.4 87 54.0
PRCOL_00000521 Prasinoderma coloniale HOM05D005510 ORTHO05D006750 1.0e-17 95.5 287 31.7
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 7.4e-16 89.4 70 64.3
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 1.2e-13 82.0 63 60.3
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 1.5e-13 81.6 125 44.0
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 6.4e-12 76.3 65 61.5
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 2.1e-10 71.2 60 61.7
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 1.0e-09 68.9 59 50.8
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 4.3e-08 63.5 56 55.4


User provided reference genes

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