Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 2.8e-126 455.3 233 100.0
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 1.8e-72 276.6 235 60.4
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 1.7e-70 270.0 235 56.6
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 3.0e-67 259.2 230 55.7
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 1.5e-66 256.9 228 57.5
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 1.5e-66 256.9 223 54.3
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 3.3e-66 255.8 229 54.1
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 5.6e-66 255.0 229 55.9
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 1.3e-65 253.8 228 55.3
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 1.3e-65 253.8 234 53.4
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.6e-65 253.4 230 57.0
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 1.6e-65 253.4 233 53.6
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 2.1e-65 253.1 228 54.8
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 2.8e-65 252.7 229 54.6
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 2.8e-65 252.7 232 53.4
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 3.6e-65 252.3 229 54.1
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 6.2e-65 251.5 228 53.1
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 8.1e-65 251.1 228 54.8
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 8.1e-65 251.1 228 54.8
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 1.1e-64 250.8 238 53.8
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 1.4e-64 250.4 228 54.4
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 1.4e-64 250.4 227 55.9
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 1.8e-64 250.0 223 55.2
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 1.8e-64 250.0 224 53.6
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 2.4e-64 249.6 222 55.0
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 3.1e-64 249.2 222 54.1
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 4.0e-64 248.8 228 53.9
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 4.0e-64 248.8 228 54.8
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 4.0e-64 248.8 222 53.6
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 5.3e-64 248.4 238 53.4
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 9.0e-64 247.7 223 53.8
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 1.2e-63 247.3 229 53.3
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 1.2e-63 247.3 226 51.3
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 1.5e-63 246.9 236 52.1
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 2.0e-63 246.5 227 53.3
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 2.0e-63 246.5 226 54.9
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 2.0e-63 246.5 223 53.8
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 2.6e-63 246.1 233 53.2
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 2.6e-63 246.1 228 53.5
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 2.6e-63 246.1 224 54.9
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 4.5e-63 245.4 236 51.3
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 4.5e-63 245.4 223 52.5
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 5.8e-63 245.0 228 54.8
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 5.8e-63 245.0 233 51.1
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 5.8e-63 245.0 228 54.4
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 7.6e-63 244.6 234 53.0
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 9.9e-63 244.2 234 52.6
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 9.9e-63 244.2 228 53.5
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 9.9e-63 244.2 227 55.5
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 1.3e-62 243.8 219 53.4
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 1.7e-62 243.4 235 51.5
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.7e-62 243.4 224 54.0
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 1.7e-62 243.4 233 51.1
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 2.2e-62 243.0 236 51.7
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 2.2e-62 243.0 223 53.8
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 2.9e-62 242.7 238 49.6
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 3.8e-62 242.3 224 52.7
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 6.4e-62 241.5 228 54.4
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 6.4e-62 241.5 223 52.9
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 6.4e-62 241.5 225 53.8
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 6.4e-62 241.5 228 51.8
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 8.4e-62 241.1 238 51.7
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 8.4e-62 241.1 224 52.7
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 1.4e-61 240.4 224 54.9
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 1.4e-61 240.4 226 51.3
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.9e-61 240.0 223 52.5
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 2.4e-61 239.6 216 54.6
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 2.4e-61 239.6 238 50.8
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 2.4e-61 239.6 224 52.2
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 2.4e-61 239.6 229 53.3
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 3.2e-61 239.2 225 52.0
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 5.4e-61 238.4 223 52.5
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 5.4e-61 238.4 223 52.5
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 5.4e-61 238.4 228 50.9
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 7.1e-61 238.0 226 52.2
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 9.3e-61 237.7 225 52.0
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 1.6e-60 236.9 212 54.2
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 2.1e-60 236.5 242 50.0
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.7e-60 236.1 223 53.4
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.5e-60 235.7 223 53.4
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 7.9e-60 234.6 222 51.4
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 1.8e-59 233.4 241 50.2
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 2.3e-59 233.0 233 49.8
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 3.0e-59 232.6 225 51.1
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 3.9e-59 232.3 207 55.6
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 5.1e-59 231.9 207 56.0
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 8.7e-59 231.1 221 53.8
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 3.3e-58 229.2 203 54.2
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 4.3e-58 228.8 206 53.9
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.3e-57 227.3 225 52.0
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 8.1e-57 224.6 226 48.2
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.4e-56 223.0 203 55.2
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 4.0e-56 222.2 228 49.1
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 6.9e-56 221.5 228 48.2
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 9.0e-56 221.1 191 53.9
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 9.9e-55 217.6 240 47.9
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 1.3e-54 217.2 202 51.5
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 1.0e-51 207.6 234 44.4
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 1.8e-51 206.8 233 48.1
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.9e-51 205.7 182 56.6
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 5.1e-51 205.3 194 55.2
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 8.2e-49 198.0 226 44.7
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 3.1e-48 196.1 185 54.6
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 1.0e-46 191.0 176 52.8
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 1.4e-45 187.2 221 43.4
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 1.6e-44 183.7 183 49.7
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 2.1e-44 183.3 178 51.1
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 3.9e-43 179.1 256 40.6
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 1.5e-42 177.2 140 57.1
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 1.8e-40 170.2 173 47.4
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 1.5e-39 167.2 225 43.6
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 1.2e-36 157.5 272 36.4
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 3.9e-35 152.5 238 41.2
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 5.3e-32 142.1 105 62.9
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 1.2e-31 141.0 224 35.3
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.2e-30 136.7 139 51.1
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 7.4e-26 121.7 174 39.1
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 9.7e-26 121.3 115 49.6
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 4.5e-23 112.5 99 50.5
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 5.7e-18 95.5 185 30.8
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 1.1e-16 91.3 134 36.6
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 9.1e-16 88.2 129 39.5
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 2.6e-15 86.7 165 32.7
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 2.9e-14 83.2 81 54.3
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 5.0e-14 82.4 78 43.6
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 6.5e-14 82.0 80 41.2
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 1.5e-13 80.9 78 43.6
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 9.4e-13 78.2 197 29.9
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 2.1e-12 77.0 81 42.0
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 2.0e-10 70.5 76 47.4
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 6.3e-09 65.5 54 57.4
Cre03.g171100 Chlamydomonas reinhardtii HOM05D005617 ORTHO05D006847 1.2e-07 61.2 108 33.3
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 5.9e-07 58.9 48 58.3
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 1.0e-06 58.2 58 46.6
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 1.3e-06 57.8 38 63.2
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.3e-06 57.8 38 63.2
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.3e-06 57.8 38 63.2
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 2.9e-06 56.6 38 60.5


User provided reference genes

Program Settings