Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 0.0e+00 2018.8 1057 100.0
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1119.0 1057 54.6
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 0.0e+00 1097.4 1069 52.9
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 1077.8 1052 53.7
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 4.6e-309 1064.7 1057 52.4
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 6.0e-309 1064.3 1065 51.7
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 1.3e-306 1056.6 1066 50.8
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 1.3e-306 1056.6 1066 50.8
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 1.6e-306 1056.2 1064 50.8
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 6.3e-306 1054.3 1064 50.7
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 1.1e-305 1053.5 1064 50.6
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 1.1e-305 1053.5 1066 50.8
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 3.1e-305 1052.0 1066 51.9
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 3.1e-305 1052.0 1069 50.4
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 3.1e-305 1052.0 1065 50.5
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 4.1e-305 1051.6 1064 50.6
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 6.9e-305 1050.8 1062 51.0
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 2.0e-304 1049.3 1079 50.0
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 5.9e-304 1047.7 1066 50.8
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 2.2e-303 1045.8 1078 50.1
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 8.5e-303 1043.9 1068 50.3
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 1.1e-302 1043.5 1067 51.1
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 1.9e-302 1042.7 1066 50.8
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 2.5e-302 1042.3 1065 50.7
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 4.2e-302 1041.6 1080 49.8
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 1.2e-301 1040.0 1078 50.0
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 4.6e-301 1038.1 1067 50.4
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 7.9e-301 1037.3 1061 50.2
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 1.0e-300 1036.9 1065 49.9
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 3.9e-300 1035.0 1066 50.6
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 3.9e-300 1035.0 1066 50.5
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 1.1e-299 1033.5 1066 50.5
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 1.5e-299 1033.1 1065 50.5
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 3.3e-299 1031.9 1065 50.7
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 3.3e-299 1031.9 1066 49.2
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 4.3e-299 1031.6 1069 49.6
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 4.3e-299 1031.6 1082 49.4
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 5.7e-299 1031.2 1067 49.7
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 9.7e-299 1030.4 1064 49.3
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 1.3e-298 1030.0 1064 50.1
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 3.7e-298 1028.5 1064 50.3
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 2.4e-297 1025.8 1067 49.6
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 4.1e-297 1025.0 1066 49.4
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 5.3e-297 1024.6 1064 49.8
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 6.9e-297 1024.2 1063 50.2
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 1.2e-296 1023.5 1065 50.2
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 1.5e-296 1023.1 1078 49.2
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 4.5e-296 1021.5 1068 49.9
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 1.7e-295 1019.6 1062 50.1
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 2.9e-295 1018.8 1074 49.8
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 5.0e-295 1018.1 1078 49.1
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 5.0e-295 1018.1 1117 47.7
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 9.4e-294 1013.8 1074 49.8
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 9.4e-294 1013.8 1074 49.8
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 1.6e-293 1013.1 1065 50.0
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 2.1e-293 1012.7 1067 50.0
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 6.1e-293 1011.1 1069 50.2
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 1.8e-292 1009.6 1080 49.1
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 3.9e-292 1008.4 1069 49.2
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 3.9e-292 1008.4 1058 49.6
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 6.7e-292 1007.7 1068 49.3
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 1.5e-291 1006.5 1083 48.9
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 9.7e-291 1003.8 1070 48.6
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 2.8e-290 1002.3 1079 48.3
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 6.3e-290 1001.1 1066 49.2
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 2.4e-289 999.2 1031 50.2
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 2.4e-289 999.2 1068 49.4
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 2.4e-289 999.2 1081 49.1
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 3.1e-289 998.8 1061 49.6
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 4.1e-289 998.4 1068 48.5
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 4.1e-289 998.4 1068 50.0
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 7.0e-289 997.7 1068 48.6
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 7.0e-289 997.7 1031 49.4
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 9.1e-289 997.3 1080 47.9
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 9.1e-289 997.3 1069 48.6
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 9.1e-289 997.3 1069 48.5
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 1.5e-288 996.5 1068 48.5
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 2.0e-288 996.1 1079 47.9
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 4.5e-288 995.0 1079 47.8
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 4.5e-288 995.0 1082 47.6
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 7.7e-288 994.2 1079 48.1
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 1.0e-287 993.8 1071 48.8
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 1.7e-287 993.0 1068 48.3
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 2.2e-287 992.6 1079 47.9
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 3.8e-287 991.9 1069 48.3
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 3.8e-287 991.9 1065 49.1
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 1.1e-286 990.3 1082 47.0
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 1.4e-286 989.9 1067 48.4
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 4.2e-286 988.4 1068 48.5
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 5.5e-286 988.0 1034 51.3
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 9.4e-286 987.3 1069 47.8
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 2.7e-285 985.7 1065 48.7
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 1.8e-284 983.0 1067 48.0
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 1.8e-284 983.0 1071 48.2
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 2.3e-284 982.6 1068 48.1
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 5.2e-284 981.5 1069 47.6
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 5.2e-284 981.5 1068 48.3
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 6.3e-282 974.5 1005 50.8
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 1.9e-278 963.0 1077 46.6
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 5.5e-278 961.4 1026 49.0
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 3.0e-276 955.7 1037 48.6
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 3.4e-267 925.6 951 50.6
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 6.8e-260 901.4 1087 44.5
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 1.8e-257 893.3 1064 45.6
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 3.8e-255 885.6 1069 44.2
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 7.3e-254 881.3 920 49.3
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 1.2e-253 880.6 925 48.8
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 3.5e-240 835.9 905 47.1
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 2.2e-234 816.6 888 47.1
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 2.6e-227 793.1 1072 42.4
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 3.3e-222 776.2 883 47.1
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 2.7e-208 729.9 751 50.3
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 1.4e-193 681.0 731 48.4
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 4.8e-181 639.4 759 44.9
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 6.9e-180 635.6 670 49.7
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 4.1e-164 583.2 879 40.5
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 3.6e-152 543.5 612 47.4
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 3.7e-149 533.5 540 50.7
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 1.7e-101 375.2 1148 29.7
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 2.4e-100 371.3 1170 28.3
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 1.4e-92 345.5 365 45.5
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 2.3e-90 338.2 348 52.6
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 3.0e-90 337.8 347 51.0
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 7.1e-84 316.6 358 50.3
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 8.5e-69 266.5 356 44.7
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 1.8e-58 232.3 249 50.2
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 2.7e-51 208.4 223 46.2
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 2.0e-41 175.6 343 38.2
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 6.1e-35 154.1 650 23.5
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 2.2e-32 145.6 333 31.5
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 8.6e-29 133.7 321 33.3
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 1.0e-13 83.6 102 43.1
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 8.6e-13 80.5 77 58.4
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 5.6e-12 77.8 103 49.5
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 8.1e-11 73.9 85 47.1
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 3.1e-10 72.0 70 47.1
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 4.0e-10 71.6 85 44.7
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 8.9e-10 70.5 68 47.1


User provided reference genes

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