Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 0.0e+00 1143.6 561 100.0
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 9.7e-243 843.6 556 72.8
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.8e-241 839.3 549 73.2
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 1.8e-241 839.3 543 73.5
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 4.1e-241 838.2 558 71.5
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 5.3e-241 837.8 558 71.1
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 6.9e-241 837.4 539 73.7
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 1.2e-240 836.6 556 73.2
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 4.5e-240 834.7 540 73.9
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 4.5e-240 834.7 536 74.1
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 2.9e-239 832.0 539 73.3
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 2.9e-239 832.0 569 71.4
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 3.8e-239 831.6 565 69.9
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 8.5e-239 830.5 551 72.4
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 1.4e-238 829.7 559 70.8
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.4e-238 829.7 550 72.2
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 1.4e-238 829.7 550 72.2
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.4e-238 829.7 555 72.1
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 1.9e-238 829.3 539 73.3
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.9e-238 829.3 550 72.2
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 1.9e-238 829.3 558 71.1
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 7.2e-238 827.4 555 71.9
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 7.2e-238 827.4 549 72.9
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 9.4e-238 827.0 552 71.9
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 1.6e-237 826.2 537 72.3
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 1.6e-237 826.2 556 70.1
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 2.1e-237 825.9 551 70.6
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 3.6e-237 825.1 554 72.0
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 6.1e-237 824.3 555 72.1
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 6.1e-237 824.3 555 71.7
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 6.1e-237 824.3 540 73.0
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 2.3e-236 822.4 569 70.1
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 2.3e-236 822.4 563 69.8
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 5.1e-236 821.2 561 70.2
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 5.1e-236 821.2 578 69.2
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 8.8e-236 820.5 558 71.1
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 8.8e-236 820.5 558 70.8
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 1.1e-235 820.1 556 71.8
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 1.5e-235 819.7 540 72.2
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 2.0e-235 819.3 559 70.8
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 2.6e-235 818.9 561 69.9
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 4.4e-235 818.1 553 70.3
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 1.7e-234 816.2 548 69.2
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 1.7e-234 816.2 546 71.6
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 3.7e-234 815.1 551 71.3
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 4.8e-234 814.7 558 70.8
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 1.8e-233 812.8 539 71.4
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 2.4e-233 812.4 556 70.1
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 3.1e-233 812.0 559 70.5
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 5.3e-233 811.2 562 68.3
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 7.0e-233 810.8 553 70.3
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 7.0e-233 810.8 560 68.8
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 1.5e-232 809.7 550 71.3
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 1.5e-232 809.7 558 70.1
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 1.5e-232 809.7 546 71.1
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 1.5e-232 809.7 555 69.2
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 4.5e-232 808.1 551 70.4
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 5.9e-232 807.7 539 70.9
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 5.9e-232 807.7 556 70.0
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 5.9e-232 807.7 559 69.6
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 5.9e-232 807.7 548 69.9
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 7.7e-232 807.4 548 69.5
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 7.7e-232 807.4 556 69.4
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 1.0e-231 807.0 555 69.4
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 1.0e-231 807.0 549 71.2
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 1.3e-231 806.6 558 70.1
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 3.8e-231 805.1 557 69.1
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 6.5e-231 804.3 549 69.8
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 8.5e-231 803.9 567 69.0
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 1.4e-230 803.1 567 67.7
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 1.4e-230 803.1 549 69.8
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.9e-230 802.7 542 70.5
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 1.9e-230 802.7 538 71.4
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 3.2e-230 802.0 547 69.8
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 9.4e-230 800.4 545 70.3
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 1.2e-229 800.0 563 70.0
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.1e-229 799.3 544 71.0
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 3.6e-229 798.5 542 69.9
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 3.6e-229 798.5 542 70.7
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 4.7e-229 798.1 548 69.9
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 4.7e-229 798.1 558 69.5
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 6.1e-229 797.7 542 70.5
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 8.0e-229 797.3 542 70.5
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 1.0e-228 797.0 549 69.8
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 1.0e-228 797.0 571 68.7
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 1.4e-228 796.6 542 70.3
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 1.8e-228 796.2 558 68.8
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.3e-228 795.8 562 69.0
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 3.0e-228 795.4 548 70.4
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 3.9e-228 795.0 555 69.0
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 3.9e-228 795.0 545 70.5
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 5.2e-228 794.7 553 70.2
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 6.7e-228 794.3 542 69.9
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 6.7e-228 794.3 547 68.9
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.1e-227 793.5 587 66.6
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 1.5e-227 793.1 542 69.7
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 2.0e-227 792.7 548 70.3
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.0e-227 792.7 587 66.6
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 2.6e-227 792.3 542 70.1
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 4.4e-227 791.6 550 69.5
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 4.4e-227 791.6 587 66.4
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 5.7e-227 791.2 542 69.7
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 5.7e-227 791.2 542 69.7
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 5.7e-227 791.2 532 70.5
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 3.7e-226 788.5 542 69.7
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 4.8e-226 788.1 555 69.2
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 6.3e-226 787.7 539 69.4
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 8.2e-226 787.3 542 69.6
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 1.1e-225 786.9 562 67.3
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.4e-225 786.6 543 70.2
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 1.4e-225 786.6 542 69.6
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 2.4e-225 785.8 542 69.6
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 5.9e-224 781.2 552 69.2
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 5.9e-224 781.2 558 69.0
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 3.8e-223 778.5 511 73.2
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 5.5e-222 774.6 641 60.4
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 6.8e-220 767.7 580 65.0
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 2.6e-219 765.8 572 68.2
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 7.0e-217 757.7 501 72.7
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 2.0e-216 756.1 516 71.7
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 3.5e-216 755.4 585 64.8
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 1.1e-214 750.4 561 66.8
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 1.8e-209 733.0 555 65.8
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 3.1e-209 732.3 484 71.7
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 4.9e-194 681.8 838 45.9
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 1.9e-193 679.9 560 58.9
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 5.4e-193 678.3 874 44.4
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 1.8e-188 663.3 385 80.0
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 3.1e-180 636.0 505 62.8
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 3.3e-174 615.9 550 57.5
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 4.7e-173 612.1 552 56.5
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 2.1e-165 586.6 432 65.7
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 1.5e-163 580.5 331 84.3
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 4.8e-157 558.9 414 67.6
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 5.1e-151 538.9 549 50.6
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 8.1e-149 531.6 402 66.4
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 1.0e-135 488.0 293 80.2
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 5.1e-127 459.1 427 59.0
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 3.2e-121 439.9 335 62.7
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 5.3e-108 396.0 444 46.4
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 4.7e-104 382.9 469 44.1
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 2.6e-94 350.5 521 37.6
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 3.3e-81 307.0 177 81.4
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 9.2e-76 288.9 401 40.4
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.5e-65 255.0 218 60.6
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 3.3e-65 253.8 367 36.0
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 4.6e-59 233.4 206 55.8
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 4.2e-52 210.3 196 52.6
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 1.0e-50 205.7 205 49.3
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 1.0e-50 205.7 205 49.3
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 6.0e-43 179.9 160 55.6
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 7.9e-43 179.5 89 94.4
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 2.3e-42 177.9 147 56.5
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 1.1e-41 175.6 221 44.8
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 2.2e-29 134.8 72 84.7
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 1.3e-18 99.0 108 46.3
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 2.8e-16 91.3 74 56.8
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 2.8e-16 91.3 74 56.8
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 3.7e-16 90.9 99 54.5
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 2.4e-15 88.2 67 64.2
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 3.2e-12 77.8 49 65.3
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 3.2e-12 77.8 49 65.3
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 8.8e-10 69.7 49 61.2
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 9.7e-09 66.2 48 58.3


User provided reference genes

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