Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO116G0084 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 4.6e-28 127.1 61 100.0
SMO119G0154 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 9.0e-16 86.3 45 86.7
AagrBONN_evm.TU.Sc2ySwM_344.3288 Anthoceros agrestis HOM05D003563 ORTHO05D005325 2.9e-14 81.3 47 74.5
AagrBONN_evm.TU.Sc2ySwM_368.1410 Anthoceros agrestis HOM05D003563 ORTHO05D005325 2.9e-14 81.3 47 74.5
CBR_g52178 Chara braunii HOM05D003563 ORTHO05D005325 5.0e-14 80.5 47 72.3
Cre03.g175400 Chlamydomonas reinhardtii HOM05D003563 ORTHO05D005325 8.5e-14 79.7 45 73.3
Mapoly0034s0044 Marchantia polymorpha HOM05D003563 ORTHO05D005325 8.5e-14 79.7 47 72.3
AagrBONN_evm.TU.Sc2ySwM_228.405 Anthoceros agrestis HOM05D003563 ORTHO05D005325 5.5e-13 77.0 45 68.9
MCO02G104 Micromonas commoda HOM05D003563 ORTHO05D005325 7.2e-13 76.6 45 73.3
ClCG08G015170 Citrullus lanatus HOM05D003563 ORTHO05D005325 1.2e-12 75.9 60 53.3
PRCOL_00005031 Prasinoderma coloniale HOM05D003563 ORTHO05D005325 1.2e-12 75.9 45 73.3
SMO340G0102 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 2.1e-12 75.1 45 68.9
Pp3c6_18070 Physcomitrium patens HOM05D003563 ORTHO05D005325 3.6e-12 74.3 47 63.8
CBR_g3932 Chara braunii HOM05D003563 ORTHO05D005325 4.6e-12 73.9 47 66.0
Lalb_Chr23g0266621 Lupinus albus HOM05D003563 ORTHO05D005325 4.6e-12 73.9 45 66.7
Phvul.009G057500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 6.1e-12 73.6 45 66.7
QL02p008438 Quercus lobata HOM05D003563 ORTHO05D005325 6.1e-12 73.6 45 66.7
CAN.G233.10 Capsicum annuum HOM05D003563 ORTHO05D005325 7.9e-12 73.2 45 64.4
ECA232G1124 Erigeron canadensis HOM05D003563 ORTHO05D005325 7.9e-12 73.2 45 66.7
Glyma.04G032600 Glycine max HOM05D003563 ORTHO05D005325 7.9e-12 73.2 45 64.4
Glyma.06G032500 Glycine max HOM05D003563 ORTHO05D005325 7.9e-12 73.2 45 64.4
Lsat_1_v5_gn_4_119160 Lactuca sativa HOM05D003563 ORTHO05D005325 7.9e-12 73.2 45 66.7
Oeu049958.2 Olea europaea HOM05D003563 ORTHO05D005325 7.9e-12 73.2 46 65.2
vmacro21635 Vaccinium macrocarpon HOM05D003563 ORTHO05D005325 7.9e-12 73.2 45 68.9
Atru.chr13.492 Acer truncatum HOM05D003563 ORTHO05D005325 1.0e-11 72.8 45 66.7
AT5G42740 Arabidopsis thaliana HOM05D003563 ORTHO05D005325 1.0e-11 72.8 45 66.7
CSS0002435 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D005325 1.0e-11 72.8 45 66.7
CARHR181650 Cardamine hirsuta HOM05D003563 ORTHO05D005325 1.0e-11 72.8 45 66.7
COL.COLO4_26329 Corchorus olitorius HOM05D003563 ORTHO05D005325 1.0e-11 72.8 45 66.7
Duzib093G1625 Durio zibethinus HOM05D003563 ORTHO05D005325 1.0e-11 72.8 45 66.7
Eucgr.F01561 Eucalyptus grandis HOM05D003563 ORTHO05D005325 1.0e-11 72.8 45 66.7
Gohir.D01G104300 Gossypium hirsutum HOM05D003563 ORTHO05D005325 1.0e-11 72.8 45 66.7
Gorai.002G128400 Gossypium raimondii HOM05D003563 ORTHO05D005325 1.0e-11 72.8 45 66.7
Nitab4.5_0009269g0010 Nicotiana tabacum HOM05D003563 ORTHO05D005325 1.0e-11 72.8 45 64.4
Os03g0776000 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 1.0e-11 72.8 45 66.7
Os06g0256500 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 1.0e-11 72.8 45 66.7
Rhsim06G0034400 Rhododendron simsii HOM05D003563 ORTHO05D005325 1.0e-11 72.8 45 66.7
THA.LOC104798643 Tarenaya hassleriana HOM05D003563 ORTHO05D005325 1.0e-11 72.8 45 64.4
HPP92_002698 Vanilla planifolia HOM05D003563 ORTHO05D005325 1.0e-11 72.8 45 66.7
HPP92_002716 Vanilla planifolia HOM05D003563 ORTHO05D005325 1.0e-11 72.8 45 66.7
arahy.Tifrunner.gnm1.ann1.7JQX15 Arachis hypogaea HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 64.4
arahy.Tifrunner.gnm1.ann1.UW0ZL7 Arachis hypogaea HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 64.4
Ca_04241_v3 Cicer arietinum L. HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 64.4
MELO3C010936.2 Cucumis melo HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 64.4
CsaV3_2G028640 Cucumis sativus L. HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 64.4
Dinv36074 Davidia involucrata HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 64.4
Dinv39412 Davidia involucrata HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 64.4
Migut.C00716 Erythranthe guttata HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 64.4
MD15G1031400 Malus domestica HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 64.4
Manes.18G027800 Manihot esculenta HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 64.4
Medtr6g009330 Medicago truncatula HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 64.4
PSO541G4717 Papaver somniferum HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 64.4
PSO675G8753 Papaver somniferum HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 64.4
Psat1g077120 Pisum sativum HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 64.4
Prupe.1G380500 Prunus persica HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 64.4
RcHm_v2.0_Chr6g0300881 Rosa chinensis HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 66.7
Sed0015721 Sechium edule HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 64.4
Sed0018414 Sechium edule HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 64.4
Thecc.08G025500 Theobroma cacao HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 66.7
TPR.G32590 Trifolium pratense HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 64.4
VMungo1309G1719 Vigna mungo HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 64.4
GSVIVG01009697001 Vitis vinifera HOM05D003563 ORTHO05D005325 1.4e-11 72.4 45 64.4
Ah.02g117440 Amaranthus hybridus HOM05D003563 ORTHO05D005325 1.8e-11 72.0 47 63.8
EL10Ac5g11903 Beta vulgaris HOM05D003563 ORTHO05D005325 1.8e-11 72.0 47 63.8
Carub.0008s0621 Capsella rubella HOM05D003563 ORTHO05D005325 1.8e-11 72.0 45 66.7
Cc10_g02970 Coffea canephora HOM05D003563 ORTHO05D005325 1.8e-11 72.0 45 66.7
FvH4_2g39910 Fragaria vesca HOM05D003563 ORTHO05D005325 1.8e-11 72.0 45 64.4
FAN15G3737 Fragaria x ananassa HOM05D003563 ORTHO05D005325 1.8e-11 72.0 45 64.4
FAN27G1814 Fragaria x ananassa HOM05D003563 ORTHO05D005325 1.8e-11 72.0 45 64.4
HanXRQChr09g0268611 Helianthus annuus HOM05D003563 ORTHO05D005325 1.8e-11 72.0 45 64.4
Nn1g05025 Nelumbo nucifera HOM05D003563 ORTHO05D005325 1.8e-11 72.0 45 64.4
Nn5g29576 Nelumbo nucifera HOM05D003563 ORTHO05D005325 1.8e-11 72.0 45 64.4
SalBow7G2312 Salvia bowleyana HOM05D003563 ORTHO05D005325 1.8e-11 72.0 45 64.4
Solyc12g014380.3 Solanum lycopersicum HOM05D003563 ORTHO05D005325 1.8e-11 72.0 45 62.2
Sopen12g006150 Solanum pennellii HOM05D003563 ORTHO05D005325 1.8e-11 72.0 45 62.2
SGA_v2.0_scaffold54G19524 Striga asiatica HOM05D003563 ORTHO05D005325 1.8e-11 72.0 45 64.4
ATR0057G040 Amborella trichopoda HOM05D003563 ORTHO05D005325 2.3e-11 71.6 45 64.4
Cfa018145 Carpinus fangiana HOM05D003563 ORTHO05D005325 2.3e-11 71.6 45 64.4
AUR62007425 Chenopodium quinoa HOM05D003563 ORTHO05D005325 2.3e-11 71.6 47 61.7
Haze_07272 Corylus avellana HOM05D003563 ORTHO05D005325 2.3e-11 71.6 45 64.4
Lj7C352G3 Lonicera japonica HOM05D003563 ORTHO05D005325 2.3e-11 71.6 45 62.2
MBI16_g36556_MAGBIO Magnolia biondii HOM05D003563 ORTHO05D005325 2.3e-11 71.6 45 64.4
MD08G1034600 Malus domestica HOM05D003563 ORTHO05D005325 2.3e-11 71.6 45 64.4
Actinidia15322 Actinidia chinensis HOM05D003563 ORTHO05D005325 3.0e-11 71.2 45 64.4
CARHR213980 Cardamine hirsuta HOM05D003563 ORTHO05D005325 3.0e-11 71.2 45 66.7
CDE11G0237 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 3.0e-11 71.2 44 68.2
AUR62027308 Chenopodium quinoa HOM05D003563 ORTHO05D005325 3.0e-11 71.2 47 59.6
DCAR_020972 Daucus carota HOM05D003563 ORTHO05D005325 3.0e-11 71.2 45 62.2
Glyma.19G017200 Glycine max HOM05D003563 ORTHO05D005325 3.0e-11 71.2 45 64.4
Phvul.004G023500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 3.0e-11 71.2 45 64.4
Sabra08G0090300 Salix brachista HOM05D003563 ORTHO05D005325 3.0e-11 71.2 45 66.7
TWI56G0595 Tripterygium wilfordii HOM05D003563 ORTHO05D005325 3.0e-11 71.2 45 66.7
VMungo0464G1044 Vigna mungo HOM05D003563 ORTHO05D005325 3.0e-11 71.2 45 64.4
MSTRG.1282 Avicennia marina HOM05D003563 ORTHO05D005325 3.9e-11 70.9 45 66.7
CDE05G1619 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 3.9e-11 70.9 45 64.4
Sc02g0006230 Simmondsia chinensis HOM05D003563 ORTHO05D005325 3.9e-11 70.9 45 64.4
Zm00001eb059230 Zea mays HOM05D003563 ORTHO05D005325 3.9e-11 70.9 45 64.4
Cpa.g.sc36.68 Carica papaya HOM05D003563 ORTHO05D005325 5.1e-11 70.5 45 62.2
Gohir.A01G116000 Gossypium hirsutum HOM05D003563 ORTHO05D005325 5.1e-11 70.5 45 66.7
Manes.05G160800 Manihot esculenta HOM05D003563 ORTHO05D005325 5.1e-11 70.5 45 62.2
Peaxi162Scf00333g00512 Petunia axillaris HOM05D003563 ORTHO05D005325 5.1e-11 70.5 45 64.4
Potri.008G118900 Populus trichocarpa HOM05D003563 ORTHO05D005325 5.1e-11 70.5 45 62.2
unitig_37.g12990 Utricularia gibba HOM05D003563 ORTHO05D005325 5.1e-11 70.5 45 62.2
BcaB07g31058 Brassica carinata HOM05D003563 ORTHO05D005325 6.7e-11 70.1 45 64.4
BcaC04g21978 Brassica carinata HOM05D003563 ORTHO05D005325 6.7e-11 70.1 45 64.4
A09p19900 Brassica napus HOM05D003563 ORTHO05D005325 6.7e-11 70.1 45 64.4
C09p25230 Brassica napus HOM05D003563 ORTHO05D005325 6.7e-11 70.1 45 64.4
BolC9t55419H Brassica oleracea HOM05D003563 ORTHO05D005325 6.7e-11 70.1 45 64.4
BraA09t37600Z Brassica rapa HOM05D003563 ORTHO05D005325 6.7e-11 70.1 45 64.4
Sp2g07360 Schrenkiella parvula HOM05D003563 ORTHO05D005325 6.7e-11 70.1 45 64.4
TAR381G1659 Trochodendron aralioides HOM05D003563 ORTHO05D005325 6.7e-11 70.1 45 62.2
Aqoxy6G01090 Aquilegia oxysepala HOM05D003563 ORTHO05D005325 8.8e-11 69.7 45 62.2
MSTRG.25165 Avicennia marina HOM05D003563 ORTHO05D005325 8.8e-11 69.7 45 62.2
CANSAT21G1125 Cannabis sativa HOM05D003563 ORTHO05D005325 8.8e-11 69.7 45 62.2
CANSAT25G0144 Cannabis sativa HOM05D003563 ORTHO05D005325 8.8e-11 69.7 45 60.0
CiPaw.15G077500 Carya illinoinensis HOM05D003563 ORTHO05D005325 8.8e-11 69.7 47 59.6
Lj4A41G56 Lonicera japonica HOM05D003563 ORTHO05D005325 8.8e-11 69.7 45 60.0
Aa31LG9G12790 Aethionema arabicum HOM05D003563 ORTHO05D005325 1.1e-10 69.3 45 66.7
Ciclev10000722m.g Citrus clementina HOM05D003563 ORTHO05D005325 1.1e-10 69.3 45 62.2
Lj1g0022254 Lotus japonicus HOM05D003563 ORTHO05D005325 1.1e-10 69.3 45 62.2
SHI08159 Sapria himalayana HOM05D003563 ORTHO05D005325 1.1e-10 69.3 46 63.0
SEGI_25229 Sequoiadendron giganteum HOM05D003563 ORTHO05D005325 1.1e-10 69.3 45 64.4
Oeu029861.1 Olea europaea HOM05D003563 ORTHO05D005325 2.6e-10 68.2 45 62.2
PGR083G2760 Punica granatum HOM05D003563 ORTHO05D005325 2.6e-10 68.2 45 60.0
Thhalv10003173m.g Eutrema salsugineum HOM05D003563 ORTHO05D005325 5.7e-10 67.0 45 64.4
Pp3c5_3820 Physcomitrium patens HOM05D003563 ORTHO05D005325 1.3e-09 65.9 47 57.4
Pp3c25_1860 Physcomitrium patens HOM05D003563 ORTHO05D005325 2.2e-09 65.1 45 64.4
Pp3c16_6380 Physcomitrium patens HOM05D003563 ORTHO05D005325 2.8e-09 64.7 45 64.4
FAN20G1254 Fragaria x ananassa HOM05D003563 ORTHO05D005325 2.4e-08 61.6 42 59.5
Hma1.2p1_0203F.1_g086419 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 4.1e-08 60.8 43 55.8
Hma1.2p1_0105F.1_g050870 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 3.4e-07 57.8 45 55.6
Hma1.2p1_0105F.1_g050873 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 3.4e-07 57.8 45 55.6
Hma1.2p1_0105F.1_g050876 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 3.4e-07 57.8 45 55.6
Hma1.2p1_0105F.1_g050879 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 7.7e-07 56.6 45 55.6


User provided reference genes

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