Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 8.9e-259 896.3 432 100.0
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 5.6e-136 488.4 424 56.8
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 1.4e-134 483.8 424 56.4
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 1.4e-134 483.8 428 56.5
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 3.1e-134 482.6 428 56.5
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 1.5e-133 480.3 429 54.8
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 2.6e-133 479.6 421 55.8
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 4.4e-133 478.8 419 55.4
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 4.4e-133 478.8 408 56.4
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 3.8e-132 475.7 411 55.2
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 3.8e-132 475.7 357 62.5
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 3.8e-132 475.7 423 55.8
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 6.4e-132 474.9 425 56.2
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 6.4e-132 474.9 425 54.4
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 6.4e-132 474.9 417 55.6
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 6.4e-132 474.9 412 55.6
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 6.4e-132 474.9 417 54.7
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 1.9e-131 473.4 366 59.3
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 5.4e-131 471.9 425 55.8
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 7.1e-131 471.5 425 55.8
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 7.1e-131 471.5 410 55.6
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 9.2e-131 471.1 423 54.6
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 1.2e-130 470.7 420 54.0
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 3.5e-130 469.2 423 54.4
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 3.5e-130 469.2 357 61.3
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 3.5e-130 469.2 421 55.8
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 4.6e-130 468.8 414 56.5
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 7.8e-130 468.0 414 55.3
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 2.3e-129 466.5 357 60.5
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 3.9e-129 465.7 357 59.7
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 5.1e-129 465.3 414 55.6
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 5.1e-129 465.3 364 61.8
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 8.7e-129 464.5 419 54.7
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 8.7e-129 464.5 357 60.5
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 1.1e-128 464.2 441 54.2
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 1.1e-128 464.2 357 60.5
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 1.5e-128 463.8 417 54.0
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 1.5e-128 463.8 412 56.1
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 1.9e-128 463.4 414 56.8
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 2.5e-128 463.0 428 54.7
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 3.3e-128 462.6 357 59.4
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 3.3e-128 462.6 427 53.9
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 4.3e-128 462.2 357 59.4
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 5.6e-128 461.8 357 60.8
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 7.3e-128 461.5 413 55.4
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 7.3e-128 461.5 417 54.2
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 9.6e-128 461.1 357 59.7
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 9.6e-128 461.1 357 60.5
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 1.3e-127 460.7 409 54.8
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 1.3e-127 460.7 428 54.4
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 1.3e-127 460.7 421 54.4
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 2.1e-127 459.9 417 54.0
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 2.8e-127 459.5 409 55.7
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 3.6e-127 459.1 431 52.2
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 4.8e-127 458.8 413 55.0
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 6.2e-127 458.4 356 59.3
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 1.8e-126 456.8 342 61.7
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 2.4e-126 456.4 438 51.8
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 5.3e-126 455.3 411 54.3
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 6.9e-126 454.9 357 59.7
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 9.0e-126 454.5 358 60.3
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.5e-125 453.8 378 56.9
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 1.5e-125 453.8 357 59.4
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 2.6e-125 453.0 402 55.5
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 2.6e-125 453.0 357 59.9
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 2.6e-125 453.0 376 57.4
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 4.4e-125 452.2 357 58.3
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 4.4e-125 452.2 357 58.3
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 9.9e-125 451.1 407 53.6
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.7e-124 450.3 339 63.4
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 2.9e-124 449.5 373 56.8
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 2.9e-124 449.5 358 59.5
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 2.9e-124 449.5 357 59.1
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 3.8e-124 449.1 339 64.6
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 4.9e-124 448.7 357 59.4
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 8.4e-124 448.0 391 56.8
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 3.5e-122 442.6 338 61.8
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 1.7e-121 440.3 357 58.3
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 1.7e-121 440.3 463 49.9
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 3.0e-121 439.5 411 53.3
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 7.3e-120 434.9 485 48.2
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 6.2e-119 431.8 431 51.3
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 8.1e-119 431.4 379 55.4
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 6.9e-118 428.3 429 51.7
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 1.7e-116 423.7 424 51.4
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 4.9e-116 422.2 332 59.3
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 5.4e-115 418.7 357 57.4
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 9.3e-115 417.9 381 53.5
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 1.6e-114 417.2 303 62.4
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 6.7e-113 411.8 413 51.3
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 1.6e-106 390.6 293 63.1
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 1.0e-105 387.9 328 58.2
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 1.1e-104 384.4 391 50.4
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.4e-102 376.7 381 49.9
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 5.8e-101 372.1 357 51.8
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 2.9e-100 369.8 332 53.0
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 3.2e-99 366.3 411 47.2
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 5.5e-99 365.5 362 53.0
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 1.4e-91 340.9 357 49.6
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 8.8e-89 331.6 362 45.3
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 5.3e-86 322.4 270 58.1
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 6.9e-86 322.0 377 47.5
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 5.9e-85 318.9 311 50.5
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 7.4e-72 275.4 375 41.9
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 3.5e-69 266.5 179 65.9
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 1.0e-68 265.0 179 65.4
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 8.5e-68 261.9 179 66.5
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 2.5e-67 260.4 343 42.0
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 3.2e-67 260.0 179 65.4
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 4.2e-67 259.6 179 65.4
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 9.4e-67 258.5 316 45.3
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 5.5e-59 232.6 280 43.6
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 1.5e-51 208.0 245 46.1
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 2.5e-51 207.2 235 47.2
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 4.1e-46 189.9 162 58.0
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 5.0e-44 183.0 128 66.4
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 3.3e-43 180.3 128 63.3
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 1.8e-41 174.5 367 32.4
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 6.8e-41 172.6 236 44.5
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 4.4e-40 169.9 229 44.5
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 7.8e-37 159.1 108 67.6
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 4.7e-34 149.8 109 60.6
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 1.1e-33 148.7 357 31.7
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 2.6e-24 117.5 74 63.5
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 6.4e-23 112.8 73 68.5
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 8.4e-23 112.5 366 27.3
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 2.4e-14 84.3 56 62.5
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 6.9e-09 66.2 80 38.8
CBR_g24397 Chara braunii HOM05D005921 ORTHO05D132278 9.3e-06 55.8 75 36.0


User provided reference genes

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