Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 8.8e-66 255.4 476 100.0
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 6.8e-18 96.3 242 88.0
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 6.8e-18 96.3 242 88.0
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 7.1e-15 86.3 244 86.9
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 9.2e-15 85.9 461 80.3
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 2.7e-14 84.3 257 81.3
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 1.3e-13 82.0 459 79.7
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 3.0e-13 80.9 467 68.1
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 6.6e-13 79.7 455 80.4
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 8.6e-13 79.3 455 81.1
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 1.1e-12 79.0 467 77.3
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 1.1e-12 79.0 467 76.7
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 4.3e-12 77.0 457 78.6
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 9.5e-12 75.9 455 76.0
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 9.5e-12 75.9 455 76.0
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 9.5e-12 75.9 457 78.1
CBR_g61650 Chara braunii HOM05D006250 ORTHO05D007107 1.2e-11 75.5 244 81.6
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 1.2e-11 75.5 457 77.2
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 6.2e-11 73.2 244 81.1
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 6.2e-11 73.2 455 78.9
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 8.1e-11 72.8 455 76.9
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 1.1e-10 72.4 460 78.0
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 1.1e-10 72.4 242 83.9
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 1.1e-10 72.4 242 83.9
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 1.4e-10 72.0 67 50.7
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 1.8e-10 71.6 98 43.9
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 1.8e-10 71.6 239 77.4
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 1.8e-10 71.6 81 77.8
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 2.4e-10 71.2 67 52.2
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 2.4e-10 71.2 62 54.8
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 3.1e-10 70.9 240 53.8
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 8.9e-10 69.3 467 77.3
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 8.9e-10 69.3 92 43.5
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 1.2e-09 68.9 64 53.1
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 1.2e-09 68.9 64 50.0
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 1.5e-09 68.6 62 54.8
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 1.5e-09 68.6 62 54.8
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 1.5e-09 68.6 62 54.8
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 1.5e-09 68.6 62 54.8
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 1.5e-09 68.6 62 54.8
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 1.5e-09 68.6 62 53.2
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 1.5e-09 68.6 62 54.8
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 1.5e-09 68.6 452 77.7
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 2.0e-09 68.2 62 54.8
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 2.0e-09 68.2 242 77.7
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 2.6e-09 67.8 62 53.2
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 2.6e-09 67.8 62 53.2
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 2.6e-09 67.8 62 53.2
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 2.6e-09 67.8 62 53.2
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 2.6e-09 67.8 62 53.2
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 2.6e-09 67.8 62 53.2
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 2.6e-09 67.8 62 53.2
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 2.6e-09 67.8 62 53.2
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 2.6e-09 67.8 62 53.2
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 2.6e-09 67.8 62 53.2
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 2.6e-09 67.8 62 53.2
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 2.6e-09 67.8 62 53.2
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 3.4e-09 67.4 62 51.6
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 3.4e-09 67.4 62 51.6
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 3.4e-09 67.4 62 51.6
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 3.4e-09 67.4 62 51.6
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 3.4e-09 67.4 62 51.6
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 4.4e-09 67.0 64 51.6
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 5.8e-09 66.6 62 51.6
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 7.6e-09 66.2 67 47.8
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 7.6e-09 66.2 62 51.6
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 7.6e-09 66.2 62 51.6
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 7.6e-09 66.2 67 49.3
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 7.6e-09 66.2 67 49.3
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 9.9e-09 65.9 64 51.6
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 9.9e-09 65.9 64 51.6
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 9.9e-09 65.9 74 50.0
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 9.9e-09 65.9 62 48.4
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 1.3e-08 65.5 64 50.0
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 1.3e-08 65.5 64 50.0
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 1.3e-08 65.5 67 49.3
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 1.3e-08 65.5 63 47.6
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 1.3e-08 65.5 74 50.0
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 1.3e-08 65.5 62 50.0
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 1.3e-08 65.5 62 48.4
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 1.3e-08 65.5 62 50.0
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 1.3e-08 65.5 62 50.0
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 1.3e-08 65.5 62 48.4
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 1.7e-08 65.1 67 50.7
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 1.7e-08 65.1 244 82.8
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 1.7e-08 65.1 62 50.0
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 2.2e-08 64.7 74 47.3
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 2.2e-08 64.7 64 46.9
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 2.2e-08 64.7 62 48.4
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 2.2e-08 64.7 62 48.4
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 2.9e-08 64.3 64 46.9
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 2.9e-08 64.3 62 50.0
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 2.9e-08 64.3 62 51.6
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 2.9e-08 64.3 62 51.6
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 2.9e-08 64.3 62 51.6
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 3.8e-08 63.9 92 41.3
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 3.8e-08 63.9 62 50.0
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 4.9e-08 63.5 58 51.7
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 4.9e-08 63.5 62 51.6
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 4.9e-08 63.5 63 46.0
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 4.9e-08 63.5 87 44.8
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 4.9e-08 63.5 63 47.6
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 6.4e-08 63.2 62 46.8
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 6.4e-08 63.2 70 47.1
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 8.4e-08 62.8 62 46.8
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 1.1e-07 62.4 62 50.0
SEGI_34898 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 1.1e-07 62.4 233 77.7
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 1.4e-07 62.0 67 47.8
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 1.4e-07 62.0 62 46.8
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 1.9e-07 61.6 62 48.4
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 2.4e-07 61.2 65 49.2
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 5.4e-07 60.1 80 70.0
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 7.1e-07 59.7 62 46.8
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 7.1e-07 59.7 39 64.1
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 3.5e-06 57.4 81 70.4
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 3.5e-06 57.4 58 46.6


User provided reference genes

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