Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 0.0e+00 1247.3 634 100.0
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 5.6e-177 625.2 650 51.5
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 4.8e-176 622.1 649 51.6
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 3.1e-175 619.4 649 51.3
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 3.1e-175 619.4 672 49.7
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 1.6e-171 607.1 649 50.7
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 1.6e-171 607.1 650 49.2
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 3.9e-170 602.4 651 49.9
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 1.1e-169 600.9 649 49.2
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 1.9e-169 600.1 650 49.2
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 2.5e-169 599.7 647 49.0
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 4.3e-169 599.0 651 49.6
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 7.4e-169 598.2 650 49.1
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 9.6e-169 597.8 677 47.4
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 1.6e-168 597.0 647 49.8
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 3.7e-168 595.9 648 48.3
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 8.1e-168 594.7 650 48.0
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 8.1e-168 594.7 650 47.8
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 1.4e-167 594.0 647 48.7
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 3.1e-167 592.8 649 48.2
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 5.3e-167 592.0 646 48.8
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 9.0e-167 591.3 648 48.6
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 9.0e-167 591.3 650 49.2
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 1.2e-166 590.9 650 47.7
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 2.6e-166 589.7 649 47.9
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 2.6e-166 589.7 650 47.4
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 4.5e-166 589.0 650 48.9
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 5.8e-166 588.6 651 47.8
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 7.6e-166 588.2 651 48.1
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 1.3e-165 587.4 651 49.2
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 2.2e-165 586.6 654 46.9
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 2.9e-165 586.3 649 48.1
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 6.4e-165 585.1 650 46.9
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 8.4e-165 584.7 651 47.5
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 8.4e-165 584.7 650 47.8
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 8.4e-165 584.7 646 48.1
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 7.1e-164 581.6 649 47.9
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 1.2e-163 580.9 650 46.9
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 1.6e-163 580.5 647 48.2
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 2.7e-163 579.7 645 46.4
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 3.5e-163 579.3 648 48.3
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 1.0e-162 577.8 650 48.8
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 2.3e-162 576.6 648 47.4
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 3.0e-162 576.2 694 46.0
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 5.1e-162 575.5 649 46.5
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 5.1e-162 575.5 647 47.6
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 6.7e-162 575.1 649 48.2
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 8.7e-162 574.7 651 48.4
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 1.5e-161 573.9 647 47.1
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 1.5e-161 573.9 647 47.4
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 4.3e-161 572.4 648 47.2
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 5.7e-161 572.0 650 47.8
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 5.7e-161 572.0 648 47.7
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 7.4e-161 571.6 646 48.6
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 7.4e-161 571.6 647 47.4
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 3.7e-160 569.3 665 45.6
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 1.8e-159 567.0 649 46.5
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 1.2e-158 564.3 649 46.7
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 2.0e-158 563.5 646 47.4
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 4.5e-158 562.4 650 46.0
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 2.9e-157 559.7 649 47.3
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 6.5e-157 558.5 684 44.7
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 8.4e-157 558.1 712 42.8
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 1.4e-156 557.4 650 46.0
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 2.5e-156 556.6 651 44.7
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 2.5e-156 556.6 651 44.9
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 2.5e-156 556.6 727 43.6
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 5.5e-156 555.4 651 45.0
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 6.1e-155 552.0 630 48.1
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 2.3e-154 550.1 651 44.5
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 1.9e-153 547.0 651 44.1
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 2.5e-153 546.6 654 43.9
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 7.4e-153 545.0 646 43.7
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 7.4e-153 545.0 631 46.6
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 1.3e-152 544.3 639 47.4
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 2.2e-152 543.5 675 45.9
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.8e-152 543.1 649 46.5
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 3.7e-152 542.7 680 44.4
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 4.8e-152 542.3 650 43.5
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 5.3e-151 538.9 676 43.3
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 5.3e-151 538.9 571 49.9
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 9.0e-151 538.1 640 44.4
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 1.7e-149 533.9 682 45.0
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 2.2e-149 533.5 699 42.1
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 7.2e-148 528.5 640 43.8
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 5.1e-146 522.3 576 48.4
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 1.1e-145 521.2 640 44.1
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 7.4e-145 518.5 589 47.2
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 9.7e-145 518.1 713 40.1
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 1.2e-142 511.1 565 47.8
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 4.5e-142 509.2 645 45.0
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 5.0e-141 505.8 644 43.0
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 1.4e-140 504.2 702 41.7
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 6.1e-139 498.8 588 46.9
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 1.7e-136 490.7 564 46.5
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.7e-136 490.7 627 44.0
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 3.1e-135 486.5 678 42.5
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 6.7e-130 468.8 645 43.1
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 4.4e-129 466.1 508 48.8
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 7.4e-129 465.3 613 43.7
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 1.6e-126 457.6 561 45.8
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 4.2e-124 449.5 643 41.2
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 6.5e-117 425.6 493 46.2
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 1.8e-82 311.2 351 45.6
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 4.7e-75 286.6 308 48.4
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 3.2e-71 273.9 667 30.4
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 4.2e-71 273.5 325 44.9
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 4.5e-57 226.9 297 41.4
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 6.7e-53 213.0 242 51.2
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 8.7e-53 212.6 352 38.6
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 4.3e-52 210.3 363 36.4
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 2.9e-48 197.6 331 39.6
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 6.5e-48 196.4 624 29.2
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 3.9e-29 134.0 181 37.0
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 5.1e-29 133.7 158 45.6
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 2.2e-27 128.3 324 29.9
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 1.1e-26 125.9 113 56.6
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 7.9e-22 109.8 107 55.1
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 1.8e-13 82.0 114 39.5
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 3.7e-11 74.3 63 52.4
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.1e-10 72.8 51 58.8
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 9.1e-10 69.7 64 45.3
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 1.2e-09 69.3 86 39.5
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.6e-09 68.9 68 51.5
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.0e-09 68.6 79 46.8
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 1.3e-08 65.9 47 61.7
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 3.8e-08 64.3 90 35.6
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 3.8e-08 64.3 66 51.5
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 6.1e-06 57.0 83 36.1


User provided reference genes

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