Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO115G0264 Selaginella moellendorffii HOM05D003963 ORTHO05D004558 1.1e-232 809.7 435 100.0
SMO119G0185 Selaginella moellendorffii HOM05D003963 ORTHO05D004066 8.7e-20 102.4 48 100.0
Nitab4.5_0001748g0030 Nicotiana tabacum HOM05D003548 ORTHO05D004066 2.1e-13 81.3 195 33.3
Nitab4.5_0000966g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 1.9e-11 74.7 208 32.2
PSO063G3847 Papaver somniferum HOM05D003548 ORTHO05D004066 1.3e-10 72.0 156 34.6
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 3.7e-10 70.5 160 35.0
Solyc08g081760.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 3.7e-10 70.5 152 36.2
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 4.8e-10 70.1 71 52.1
PSO170G6721 Papaver somniferum HOM05D003548 ORTHO05D004066 6.3e-10 69.7 156 32.7
PGSC0003DMG400028194 Solanum tuberosum HOM05D003548 ORTHO05D004066 8.2e-10 69.3 162 32.1
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 1.1e-09 68.9 158 33.5
Rhsim02G0237300 Rhododendron simsii HOM05D003548 ORTHO05D004066 1.1e-09 68.9 79 46.8
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 1.4e-09 68.6 151 37.1
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 2.4e-09 67.8 159 32.1
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 2.4e-09 67.8 146 37.0
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 2.4e-09 67.8 147 36.1
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 4.1e-09 67.0 151 37.7
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 5.3e-09 66.6 152 35.5
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 6.9e-09 66.2 147 37.4
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 6.9e-09 66.2 134 35.8
Actinidia08610 Actinidia chinensis HOM05D003548 ORTHO05D004066 9.0e-09 65.9 138 33.3
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 9.0e-09 65.9 165 32.7
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 1.5e-08 65.1 159 31.4
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 1.5e-08 65.1 149 34.2
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 2.0e-08 64.7 150 36.7
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 2.0e-08 64.7 164 33.5
Lalb_Chr16g0390341 Lupinus albus HOM05D003548 ORTHO05D004066 2.0e-08 64.7 156 33.3
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 2.6e-08 64.3 162 33.3
Glyma.05G213300 Glycine max HOM05D003548 ORTHO05D004066 2.6e-08 64.3 163 31.9
Glyma.08G019800 Glycine max HOM05D003548 ORTHO05D004066 2.6e-08 64.3 162 31.5
CAN.G532.68 Capsicum annuum HOM05D003548 ORTHO05D004066 3.4e-08 63.9 152 34.2
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 3.4e-08 63.9 148 35.8
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 3.4e-08 63.9 158 34.2
Sopen08g030060 Solanum pennellii HOM05D003548 ORTHO05D004066 3.4e-08 63.9 152 34.2
TWI15G1126 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 5.9e-08 63.2 161 31.7
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 7.6e-08 62.8 148 32.4
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 7.6e-08 62.8 148 32.4
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 1.0e-07 62.4 146 34.2
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 1.0e-07 62.4 158 32.3
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 1.0e-07 62.4 167 32.9
Dinv28355 Davidia involucrata HOM05D003548 ORTHO05D004066 1.0e-07 62.4 163 33.7
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 1.0e-07 62.4 148 35.1
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 1.0e-07 62.4 148 36.5
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 1.3e-07 62.0 139 32.4
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 1.7e-07 61.6 149 32.9
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 1.7e-07 61.6 147 36.1
COL.COLO4_08334 Corchorus olitorius HOM05D003548 ORTHO05D004066 1.7e-07 61.6 162 32.1
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 1.7e-07 61.6 148 35.8
PGSC0003DMG400012172 Solanum tuberosum HOM05D003548 ORTHO05D004066 1.7e-07 61.6 152 34.2
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 2.2e-07 61.2 171 30.4
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 2.2e-07 61.2 148 35.1
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 3.8e-07 60.5 156 37.2
Psat7g029120 Pisum sativum HOM05D003548 ORTHO05D004066 3.8e-07 60.5 162 30.9
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 3.8e-07 60.5 143 33.6
TWI60G0243 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 3.8e-07 60.5 161 30.4
BolC9t54599H Brassica oleracea HOM05D003548 ORTHO05D004066 5.0e-07 60.1 165 29.1
CiPaw.12G087100 Carya illinoinensis HOM05D003548 ORTHO05D004066 5.0e-07 60.1 160 31.2
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 5.0e-07 60.1 158 31.0
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 5.0e-07 60.1 142 31.7
Manes.02G014900 Manihot esculenta HOM05D003548 ORTHO05D004066 5.0e-07 60.1 163 31.3
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 5.0e-07 60.1 138 31.2
EL10Ac3g05370 Beta vulgaris HOM05D003548 ORTHO05D004066 6.5e-07 59.7 155 31.6
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 6.5e-07 59.7 136 31.6
FAN04G2241 Fragaria x ananassa HOM05D003548 ORTHO05D004066 8.4e-07 59.3 157 31.8
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 1.1e-06 58.9 148 32.4
Cfa012267 Carpinus fangiana HOM05D003548 ORTHO05D004066 1.1e-06 58.9 151 31.1
FAN13G0102 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.1e-06 58.9 152 32.9
FAN13G1218 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.1e-06 58.9 157 31.8
Gohir.A02G103700 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.1e-06 58.9 157 32.5
Potri.001G097200 Populus trichocarpa HOM05D003548 ORTHO05D004066 1.1e-06 58.9 155 32.9
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 1.4e-06 58.5 147 32.0
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 1.4e-06 58.5 145 35.2
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 1.4e-06 58.5 145 32.4
Lj4g0009292 Lotus japonicus HOM05D003548 ORTHO05D004066 1.4e-06 58.5 158 32.9
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.4e-06 58.5 166 29.5
Phvul.002G294600 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 1.4e-06 58.5 157 30.6
Thecc.03G289200 Theobroma cacao HOM05D003548 ORTHO05D004066 1.4e-06 58.5 155 32.3
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 1.4e-06 58.5 136 33.8
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 1.4e-06 58.5 147 33.3
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 1.9e-06 58.2 151 35.1
AUR62031460 Chenopodium quinoa HOM05D003548 ORTHO05D004066 1.9e-06 58.2 158 29.7
Haze_08718 Corylus avellana HOM05D003548 ORTHO05D004066 1.9e-06 58.2 152 32.2
Migut.F01061 Erythranthe guttata HOM05D003548 ORTHO05D004066 1.9e-06 58.2 156 32.1
FvH4_5g03650 Fragaria vesca HOM05D003548 ORTHO05D004066 1.9e-06 58.2 157 31.2
FAN04G1462 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.9e-06 58.2 152 32.2
FAN18G1037 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.9e-06 58.2 157 31.2
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 1.9e-06 58.2 62 48.4
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 1.9e-06 58.2 139 30.2
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 1.9e-06 58.2 137 33.6
SEGI_29670 Sequoiadendron giganteum HOM05D003963 ORTHO05D004558 1.9e-06 58.2 137 31.4
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 2.5e-06 57.8 149 33.6
Eucgr.E00807 Eucalyptus grandis HOM05D003548 ORTHO05D004066 2.5e-06 57.8 156 32.1
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 2.5e-06 57.8 149 31.5
Gohir.D09G185600 Gossypium hirsutum HOM05D003548 ORTHO05D004066 2.5e-06 57.8 152 32.2
Gorai.006G208300 Gossypium raimondii HOM05D003548 ORTHO05D004066 2.5e-06 57.8 152 32.2
Hma1.2p1_0216F.1_g091270 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 2.5e-06 57.8 158 29.1
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 2.5e-06 57.8 143 32.9
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 2.5e-06 57.8 147 29.9
Sabra03G0096600 Salix brachista HOM05D003548 ORTHO05D004066 2.5e-06 57.8 172 29.1
CSS0034195 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 3.2e-06 57.4 157 31.2
Prupe.5G110700 Prunus persica HOM05D003548 ORTHO05D004066 3.2e-06 57.4 155 29.0
QL02p032544 Quercus lobata HOM05D003548 ORTHO05D004066 3.2e-06 57.4 160 28.8
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 3.2e-06 57.4 146 30.8
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 3.2e-06 57.4 145 31.7
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 4.2e-06 57.0 141 34.8
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 4.2e-06 57.0 129 34.1
Haze_09990 Corylus avellana HOM05D003963 ORTHO05D004558 4.2e-06 57.0 74 44.6
Duzib084G0464 Durio zibethinus HOM05D003548 ORTHO05D004066 4.2e-06 57.0 167 31.7
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 4.2e-06 57.0 144 33.3
Gohir.A09G191100 Gossypium hirsutum HOM05D003548 ORTHO05D004066 4.2e-06 57.0 152 32.2
Gorai.003G083700 Gossypium raimondii HOM05D003548 ORTHO05D004066 4.2e-06 57.0 154 32.5
TPR.G3387 Trifolium pratense HOM05D000059 ORTHO05D004066 4.2e-06 57.0 168 28.6
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 5.5e-06 56.6 62 46.8
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 5.5e-06 56.6 163 28.2
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 7.2e-06 56.2 139 30.2
Gohir.D03G080200 Gossypium hirsutum HOM05D003548 ORTHO05D004066 7.2e-06 56.2 153 31.4
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 7.2e-06 56.2 142 31.7
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 7.2e-06 56.2 153 33.3


User provided reference genes

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