Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO115G0166 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 8.4e-115 417.5 300 100.0
SMO166G0009 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 2.6e-108 396.0 302 78.1
ATR0561G144 Amborella trichopoda HOM05D003583 ORTHO05D004169 2.2e-70 270.0 318 47.5
Zm00001eb036350 Zea mays HOM05D003583 ORTHO05D004169 2.7e-68 263.1 328 45.1
AUR62016547 Chenopodium quinoa HOM05D003583 ORTHO05D004169 2.2e-67 260.0 301 46.5
Glyma.08G348400 Glycine max HOM05D003583 ORTHO05D004169 6.5e-67 258.5 313 49.8
Mapoly0037s0072 Marchantia polymorpha HOM05D003583 ORTHO05D004169 6.5e-67 258.5 321 57.3
Sc05g0001940 Simmondsia chinensis HOM05D003583 ORTHO05D004169 8.5e-67 258.1 307 56.0
Os08g0528900 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 1.1e-66 257.7 328 45.1
Lj1A89T66 Lonicera japonica HOM05D003583 ORTHO05D004169 1.5e-66 257.3 301 47.2
Glyma.18G160200 Glycine max HOM05D003583 ORTHO05D004169 2.5e-66 256.5 313 49.8
DCAR_018637 Daucus carota HOM05D003583 ORTHO05D004169 4.2e-66 255.8 301 50.5
HanXRQChr01g0015291 Helianthus annuus HOM05D003583 ORTHO05D004169 4.2e-66 255.8 302 46.4
SEGI_31201 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 5.5e-66 255.4 333 51.1
Phvul.008G131301 Phaseolus vulgaris HOM05D003583 ORTHO05D004169 7.2e-66 255.0 315 45.1
SalBow6G4396 Salvia bowleyana HOM05D003583 ORTHO05D004169 7.2e-66 255.0 314 48.1
Sed0011833 Sechium edule HOM05D003583 ORTHO05D004169 7.2e-66 255.0 301 46.5
SEGI_22924 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 1.2e-65 254.2 314 44.6
SalBow6G5082 Salvia bowleyana HOM05D003583 ORTHO05D004169 1.6e-65 253.8 316 48.1
VMungo1383G2149 Vigna mungo HOM05D003583 ORTHO05D004169 1.6e-65 253.8 315 45.4
Prupe.8G198900 Prunus persica HOM05D003583 ORTHO05D004169 2.7e-65 253.1 330 54.5
Ciclev10021065m.g Citrus clementina HOM05D003583 ORTHO05D004169 1.4e-64 250.8 327 45.3
Nitab4.5_0013864g0010 Nicotiana tabacum HOM05D003583 ORTHO05D004169 1.4e-64 250.8 301 45.8
Cfa004159 Carpinus fangiana HOM05D003583 ORTHO05D004169 1.8e-64 250.4 311 48.6
HanXRQChr04g0108021 Helianthus annuus HOM05D003583 ORTHO05D004169 2.3e-64 250.0 315 50.2
TWI36G1542 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 2.3e-64 250.0 319 45.1
TAR362G1106 Trochodendron aralioides HOM05D003583 ORTHO05D004169 2.3e-64 250.0 332 46.7
A05p40990 Brassica napus HOM05D003583 ORTHO05D004169 3.0e-64 249.6 302 59.9
CARHR081870 Cardamine hirsuta HOM05D003583 ORTHO05D004169 3.0e-64 249.6 318 47.5
Lj1g0010920 Lotus japonicus HOM05D003583 ORTHO05D004169 3.0e-64 249.6 327 44.0
THA.LOC104822491 Tarenaya hassleriana HOM05D003583 ORTHO05D004169 3.0e-64 249.6 316 47.2
C05p60140 Brassica napus HOM05D003583 ORTHO05D004169 4.0e-64 249.2 304 58.2
TWI75G1818 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 4.0e-64 249.2 317 45.1
TAR633G0566 Trochodendron aralioides HOM05D003583 ORTHO05D004169 4.0e-64 249.2 334 44.9
Carub.0003s0675 Capsella rubella HOM05D003583 ORTHO05D004169 5.2e-64 248.8 310 47.7
Eucgr.K02138 Eucalyptus grandis HOM05D003583 ORTHO05D004169 5.2e-64 248.8 322 53.4
GSVIVG01003252001 Vitis vinifera HOM05D003583 ORTHO05D004169 5.2e-64 248.8 323 44.3
CiPaw.02G023700 Carya illinoinensis HOM05D003583 ORTHO05D004169 6.8e-64 248.4 318 43.7
BcaC05g29745 Brassica carinata HOM05D003583 ORTHO05D004169 8.8e-64 248.1 307 51.5
Thhalv10021140m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 8.8e-64 248.1 320 50.0
MD10G1159800 Malus domestica HOM05D003583 ORTHO05D004169 8.8e-64 248.1 325 53.5
Carub.0003s0679 Capsella rubella HOM05D003583 ORTHO05D004169 1.2e-63 247.7 315 53.3
Sp3g06180 Schrenkiella parvula HOM05D003583 ORTHO05D004169 1.2e-63 247.7 299 48.8
ECA236G5107 Erigeron canadensis HOM05D003583 ORTHO05D004169 1.5e-63 247.3 324 45.1
Sed0008761 Sechium edule HOM05D003583 ORTHO05D004169 2.6e-63 246.5 331 43.2
SGA_v2.0_scaffold6G03502 Striga asiatica HOM05D003583 ORTHO05D004169 2.6e-63 246.5 320 63.4
CSS0028584 Camellia sinensis var. sinensis HOM05D003583 ORTHO05D004169 3.4e-63 246.1 326 47.2
Manes.13G049400 Manihot esculenta HOM05D003583 ORTHO05D004169 3.4e-63 246.1 323 49.2
Hund05577 Selenicereus undatus HOM05D003583 ORTHO05D004169 3.4e-63 246.1 322 49.7
MD05G1171600 Malus domestica HOM05D003583 ORTHO05D004169 4.4e-63 245.7 325 55.7
SalBow3G2553 Salvia bowleyana HOM05D003583 ORTHO05D004169 9.8e-63 244.6 338 47.9
AT3G07220 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 1.3e-62 244.2 317 47.3
FAN24G2032 Fragaria x ananassa HOM05D003583 ORTHO05D004169 1.3e-62 244.2 336 55.4
Potri.002G245900 Populus trichocarpa HOM05D003583 ORTHO05D004169 1.3e-62 244.2 324 47.5
MELO3C022717.2 Cucumis melo HOM05D003583 ORTHO05D004169 1.7e-62 243.8 333 42.9
CsaV3_3G030030 Cucumis sativus L. HOM05D003583 ORTHO05D004169 1.7e-62 243.8 333 42.9
Dinv19172 Davidia involucrata HOM05D003583 ORTHO05D004169 1.7e-62 243.8 343 41.4
Hma1.2p1_0226F.1_g095390 Hydrangea macrophylla HOM05D003583 ORTHO05D004169 1.7e-62 243.8 337 50.4
Lsat_1_v5_gn_5_180820 Lactuca sativa HOM05D003583 ORTHO05D004169 1.7e-62 243.8 332 42.2
AL3G18500 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 2.2e-62 243.4 313 46.0
ClCG07G002090 Citrullus lanatus HOM05D003583 ORTHO05D004169 2.2e-62 243.4 332 42.8
Manes.12G047400 Manihot esculenta HOM05D003583 ORTHO05D004169 2.2e-62 243.4 325 46.5
Nitab4.5_0003020g0040 Nicotiana tabacum HOM05D003583 ORTHO05D004169 2.2e-62 243.4 322 54.7
Oeu030584.1 Olea europaea HOM05D003583 ORTHO05D004169 2.2e-62 243.4 328 42.7
Peaxi162Scf00068g02311 Petunia axillaris HOM05D003583 ORTHO05D004169 2.2e-62 243.4 331 42.6
PSO017G0014 Papaver somniferum HOM05D003583 ORTHO05D004169 2.8e-62 243.0 328 48.5
CAN.G1418.4 Capsicum annuum HOM05D003583 ORTHO05D004169 3.7e-62 242.7 336 46.4
Duzib211G0612 Durio zibethinus HOM05D003583 ORTHO05D004169 3.7e-62 242.7 338 41.7
Thhalv10004601m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 3.7e-62 242.7 315 48.3
Cc01_g16710 Coffea canephora HOM05D003583 ORTHO05D004169 4.9e-62 242.3 340 44.7
A09p04570 Brassica napus HOM05D003583 ORTHO05D004169 6.3e-62 241.9 305 48.2
Lalb_Chr19g0125831 Lupinus albus HOM05D003583 ORTHO05D004169 6.3e-62 241.9 335 51.3
Nitab4.5_0001161g0140 Nicotiana tabacum HOM05D003583 ORTHO05D004169 6.3e-62 241.9 338 45.0
PSO063G4910 Papaver somniferum HOM05D003583 ORTHO05D004169 6.3e-62 241.9 326 50.3
Sopen09g022660 Solanum pennellii HOM05D003583 ORTHO05D004169 1.1e-61 241.1 334 41.9
Actinidia39429 Actinidia chinensis HOM05D003583 ORTHO05D004169 1.4e-61 240.7 336 41.7
Solyc09g059500.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 1.4e-61 240.7 334 43.1
AUR62001132 Chenopodium quinoa HOM05D003583 ORTHO05D004169 1.8e-61 240.4 340 49.4
Migut.N00631 Erythranthe guttata HOM05D003583 ORTHO05D004169 1.8e-61 240.4 349 43.0
FvH4_2g18540 Fragaria vesca HOM05D003583 ORTHO05D004169 1.8e-61 240.4 336 55.1
Lalb_Chr03g0041471 Lupinus albus HOM05D003583 ORTHO05D004169 1.8e-61 240.4 332 48.5
AL3G18560 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 2.4e-61 240.0 320 49.1
Rhsim13G0047800 Rhododendron simsii HOM05D003583 ORTHO05D004169 2.4e-61 240.0 337 46.0
Dinv12649 Davidia involucrata HOM05D003583 ORTHO05D004169 3.1e-61 239.6 345 47.5
RcHm_v2.0_Chr6g0284101 Rosa chinensis HOM05D003583 ORTHO05D004169 3.1e-61 239.6 336 56.2
BcaC05g29851 Brassica carinata HOM05D003583 ORTHO05D004169 4.1e-61 239.2 296 56.8
BcaB04g19581 Brassica carinata HOM05D003583 ORTHO05D004169 7.0e-61 238.4 304 51.3
BcaC04g23769 Brassica carinata HOM05D003583 ORTHO05D004169 9.2e-61 238.0 306 46.7
C09p04880 Brassica napus HOM05D003583 ORTHO05D004169 9.2e-61 238.0 306 46.7
BolC9t53416H Brassica oleracea HOM05D003583 ORTHO05D004169 9.2e-61 238.0 306 46.7
BraA05t22826Z Brassica rapa HOM05D003583 ORTHO05D004169 9.2e-61 238.0 293 55.6
BraA09t36092Z Brassica rapa HOM05D003583 ORTHO05D004169 9.2e-61 238.0 306 45.8
TPR.G6446 Trifolium pratense HOM05D003583 ORTHO05D004169 9.2e-61 238.0 347 49.6
BolC5t34665H Brassica oleracea HOM05D003583 ORTHO05D004169 1.2e-60 237.7 295 57.3
CANSAT01G0519 Cannabis sativa HOM05D003583 ORTHO05D004169 1.2e-60 237.7 337 56.1
MSTRG.17995 Avicennia marina HOM05D003583 ORTHO05D004169 1.6e-60 237.3 344 48.0
EL10Ac7g17902 Beta vulgaris HOM05D003583 ORTHO05D004169 1.6e-60 237.3 357 49.9
Gohir.A07G199000 Gossypium hirsutum HOM05D003583 ORTHO05D004169 1.6e-60 237.3 340 41.5
Solyc06g083350.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 1.6e-60 237.3 338 46.2
Sopen06g034720 Solanum pennellii HOM05D003583 ORTHO05D004169 1.6e-60 237.3 338 44.7
Gohir.D07G205500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 3.5e-60 236.1 340 41.5
Gorai.001G231500 Gossypium raimondii HOM05D003583 ORTHO05D004169 3.5e-60 236.1 340 41.5
COL.COLO4_15618 Corchorus olitorius HOM05D003583 ORTHO05D004169 4.5e-60 235.7 340 40.9
Thecc.01G220200 Theobroma cacao HOM05D003583 ORTHO05D004169 4.5e-60 235.7 344 40.1
Duzib138G0093 Durio zibethinus HOM05D003583 ORTHO05D004169 7.7e-60 235.0 339 41.0
arahy.Tifrunner.gnm1.ann1.6L1LF5 Arachis hypogaea HOM05D003583 ORTHO05D004169 1.0e-59 234.6 328 43.6
PGSC0003DMG400020100 Solanum tuberosum HOM05D003583 ORTHO05D004169 1.0e-59 234.6 338 45.9
vmacro14733 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 1.3e-59 234.2 302 44.7
Aa31LG5G17810 Aethionema arabicum HOM05D003583 ORTHO05D004169 2.3e-59 233.4 330 47.9
FAN15G2515 Fragaria x ananassa HOM05D003583 ORTHO05D004169 3.8e-59 232.6 352 54.5
CAN.G874.6 Capsicum annuum HOM05D003583 ORTHO05D004169 8.6e-59 231.5 349 60.7
Sabra02G0187200 Salix brachista HOM05D003583 ORTHO05D004169 8.6e-59 231.5 357 44.3
arahy.Tifrunner.gnm1.ann1.SP3ESK Arachis hypogaea HOM05D003583 ORTHO05D004169 1.1e-58 231.1 321 43.9
FAN27G2245 Fragaria x ananassa HOM05D003583 ORTHO05D004169 1.1e-58 231.1 347 52.7
Rhsim01G0252900 Rhododendron simsii HOM05D003583 ORTHO05D004169 1.9e-58 230.3 300 43.7
Aqoxy5G00027 Aquilegia oxysepala HOM05D003583 ORTHO05D004169 5.6e-58 228.8 355 60.0
SGA_v2.0_scaffold3G01637 Striga asiatica HOM05D003583 ORTHO05D004169 1.0e-56 224.6 311 49.2
Pp3c23_3920 Physcomitrium patens HOM05D003583 ORTHO05D004169 2.3e-56 223.4 317 43.5
Pp3c24_8070 Physcomitrium patens HOM05D003583 ORTHO05D004169 4.4e-55 219.2 312 50.0
QL09p051234 Quercus lobata HOM05D003583 ORTHO05D004169 1.3e-54 217.6 407 40.5
HPP92_003545 Vanilla planifolia HOM05D003583 ORTHO05D004169 1.3e-54 217.6 299 42.5
Nitab4.5_0000045g0500 Nicotiana tabacum HOM05D003583 ORTHO05D004169 1.7e-54 217.2 410 38.5
Pp3c23_9360 Physcomitrium patens HOM05D003583 ORTHO05D004169 2.2e-54 216.9 310 47.7
HPP92_008214 Vanilla planifolia HOM05D003583 ORTHO05D004169 2.9e-54 216.5 295 43.7
Pp3c20_16530 Physcomitrium patens HOM05D003583 ORTHO05D004169 1.6e-52 210.7 306 47.1
Haze_15252 Corylus avellana HOM05D003583 ORTHO05D004169 2.0e-52 210.3 309 47.9
Atru.chr6.1424 Acer truncatum HOM05D003583 ORTHO05D004169 1.5e-50 204.1 232 51.3
Medtr7g055873 Medicago truncatula HOM05D003583 ORTHO05D004169 2.0e-47 193.7 112 82.1
Ca_03475_v3 Cicer arietinum L. HOM05D003583 ORTHO05D004169 3.4e-47 193.0 112 82.1
Psat3g148960 Pisum sativum HOM05D003583 ORTHO05D004169 5.8e-47 192.2 112 82.1
PGR044G2612 Punica granatum HOM05D003583 ORTHO05D004169 5.8e-47 192.2 111 82.0
MBI11_g07419_MAGBIO Magnolia biondii HOM05D003583 ORTHO05D004169 9.8e-47 191.4 111 82.0
Lalb_Chr03g0041461 Lupinus albus HOM05D003583 ORTHO05D004169 1.3e-46 191.0 324 36.4
Cpa.g.sc34.102 Carica papaya HOM05D003583 ORTHO05D004169 1.7e-46 190.7 111 82.0
SHI46266 Sapria himalayana HOM05D003583 ORTHO05D004169 2.2e-46 190.3 111 82.0
SHI46763 Sapria himalayana HOM05D003583 ORTHO05D004169 2.2e-46 190.3 111 82.0
AL4G16370 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 1.9e-45 187.2 111 78.4
AT3G07260 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 3.2e-45 186.4 111 79.3
Gohir.A08G195500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 3.2e-45 186.4 314 36.6
Zm00001eb169940 Zea mays HOM05D003583 ORTHO05D004169 9.2e-45 184.9 295 45.8
Gohir.D08G212800 Gossypium hirsutum HOM05D003583 ORTHO05D004169 1.3e-43 181.0 111 78.4
unitig_749.g13590 Utricularia gibba HOM05D003583 ORTHO05D004169 1.3e-43 181.0 111 77.5
AagrBONN_evm.TU.Sc2ySwM_362.2525 Anthoceros agrestis HOM05D003583 ORTHO05D004169 6.8e-40 168.7 111 74.8
vmacro02783 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 9.8e-39 164.9 277 36.1
Lalb_Chr07g0194191 Lupinus albus HOM05D003583 ORTHO05D004169 3.7e-38 162.9 113 70.8
CBR_g31665 Chara braunii HOM05D003583 ORTHO05D004169 7.1e-37 158.7 109 70.6
Oeu057861.1 Olea europaea HOM05D003583 ORTHO05D004169 2.1e-36 157.1 94 78.7
Lalb_Chr19g0125841 Lupinus albus HOM05D003583 ORTHO05D004169 6.0e-36 155.6 109 65.1
Gorai.004G226900 Gossypium raimondii HOM05D003583 ORTHO05D004169 1.0e-35 154.8 111 71.2
Os09g0505200 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 3.9e-35 152.9 107 71.0
CANSAT01G1829 Cannabis sativa HOM05D003583 ORTHO05D004169 8.6e-35 151.8 116 62.9
unitig_0.g373 Utricularia gibba HOM05D003583 ORTHO05D004169 2.1e-33 147.1 299 34.1
Oeu009710.1 Olea europaea HOM05D003583 ORTHO05D004169 1.1e-32 144.8 94 73.4
CDE06G0189 Ceratophyllum demersum HOM05D003583 ORTHO05D004169 2.9e-30 136.7 238 35.7
SEGI_31438 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 2.5e-26 123.6 83 72.3
Zm00001eb115380 Zea mays HOM05D003583 ORTHO05D004169 9.6e-26 121.7 300 28.3
Nn5g31016 Nelumbo nucifera HOM05D003583 ORTHO05D004169 2.1e-25 120.6 89 70.8
MBI11_g07418_MAGBIO Magnolia biondii HOM05D003583 ORTHO05D004169 6.4e-22 109.0 101 49.5
unitig_60.g25602 Utricularia gibba HOM05D003583 ORTHO05D004169 1.4e-21 107.8 67 76.1
Nn3g20050 Nelumbo nucifera HOM05D002516 ORTHO05D002703 1.9e-21 107.5 101 49.5
Nn1g07991 Nelumbo nucifera HOM05D003583 ORTHO05D004169 3.2e-21 106.7 101 49.5
CANSAT01G3274 Cannabis sativa HOM05D003583 ORTHO05D004169 7.1e-21 105.5 114 53.5
CDE06G1446 Ceratophyllum demersum HOM05D003583 ORTHO05D004169 9.3e-21 105.1 99 49.5
PGR044G2014 Punica granatum HOM05D003583 ORTHO05D004169 9.3e-21 105.1 260 42.3
Actinidia30051 Actinidia chinensis HOM05D003583 ORTHO05D004169 1.6e-20 104.4 101 48.5
Nn6g33306 Nelumbo nucifera HOM05D003583 ORTHO05D004169 3.5e-20 103.2 255 35.7
Medtr7g055863 Medicago truncatula HOM05D003583 ORTHO05D004169 4.6e-20 102.8 101 48.5
Ca_03474_v3 Cicer arietinum L. HOM05D003583 ORTHO05D004169 1.0e-19 101.7 101 47.5
Nn8g40493 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.3e-19 101.3 89 57.3
TAR633G0104 Trochodendron aralioides HOM05D003583 ORTHO05D004169 1.7e-19 100.9 95 53.7
Cfa015657 Carpinus fangiana HOM05D003583 ORTHO05D004169 5.6e-18 95.9 80 56.2
Sp2g19040 Schrenkiella parvula HOM05D003583 ORTHO05D004169 9.6e-18 95.1 106 44.3
Nn7g37781 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.6e-17 94.4 279 30.5
Os11g0463600 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 1.4e-16 91.3 99 46.5
Nn5g26790 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.8e-16 90.9 71 66.2
RcHm_v2.0_Chr5g0045161 Rosa chinensis HOM05D003583 ORTHO05D004169 3.4e-15 86.7 65 60.0
RcHm_v2.0_Chr5g0045171 Rosa chinensis HOM05D003583 ORTHO05D004169 4.9e-14 82.8 65 58.5
Nn2g10235 Nelumbo nucifera HOM05D003583 ORTHO05D004169 4.2e-13 79.7 62 66.1
RcHm_v2.0_Chr1g0319631 Rosa chinensis HOM05D003583 ORTHO05D004169 9.3e-13 78.6 68 57.4
RcHm_v2.0_Chr6g0245631 Rosa chinensis HOM05D003583 ORTHO05D004169 1.2e-12 78.2 62 59.7
Cre16.g648800 Chlamydomonas reinhardtii HOM05D003583 ORTHO05D004169 4.6e-12 76.3 88 51.1
Lalb_Chr19g0125851 Lupinus albus HOM05D003583 ORTHO05D004169 4.3e-10 69.7 99 38.4
RcHm_v2.0_Chr5g0072291 Rosa chinensis HOM05D003583 ORTHO05D004169 1.8e-08 64.3 71 47.9
Rhsim10G0000100 Rhododendron simsii HOM05D000576 ORTHO05D000368 3.1e-08 63.5 64 56.2
Nn2g11337 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.2e-07 61.6 90 46.7
Rhsim01G0253000 Rhododendron simsii HOM05D003583 ORTHO05D004169 1.7e-06 57.8 42 57.1


User provided reference genes

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