Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 8.3e-63 243.4 114 100.0
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 1.2e-40 169.9 109 76.1
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 2.6e-40 168.7 109 75.2
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 9.8e-40 166.8 95 82.1
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 9.8e-40 166.8 95 82.1
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 9.8e-40 166.8 95 82.1
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 9.8e-40 166.8 95 81.1
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 9.8e-40 166.8 95 82.1
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 1.3e-39 166.4 95 81.1
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 2.2e-39 165.6 95 81.1
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 2.2e-39 165.6 95 81.1
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 2.9e-39 165.2 98 79.6
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 4.9e-39 164.5 106 75.5
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 6.4e-39 164.1 96 81.2
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 6.4e-39 164.1 95 82.1
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 8.3e-39 163.7 95 80.0
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 8.3e-39 163.7 95 81.1
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 1.1e-38 163.3 95 80.0
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 1.1e-38 163.3 95 81.1
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 1.1e-38 163.3 96 81.2
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 1.4e-38 162.9 95 80.0
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 1.4e-38 162.9 95 80.0
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 1.4e-38 162.9 105 74.3
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 1.9e-38 162.5 95 81.1
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 1.9e-38 162.5 95 81.1
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.9e-38 162.5 95 80.0
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 1.9e-38 162.5 96 79.2
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 2.4e-38 162.2 95 80.0
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 2.4e-38 162.2 95 80.0
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 2.4e-38 162.2 95 78.9
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 2.4e-38 162.2 95 80.0
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 2.4e-38 162.2 95 81.1
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 3.2e-38 161.8 95 80.0
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 3.2e-38 161.8 95 80.0
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 4.1e-38 161.4 95 80.0
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 4.1e-38 161.4 95 80.0
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.1e-38 161.4 95 78.9
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 4.1e-38 161.4 95 80.0
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 4.1e-38 161.4 95 80.0
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 5.4e-38 161.0 95 81.1
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 5.4e-38 161.0 95 80.0
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 5.4e-38 161.0 95 78.9
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 5.4e-38 161.0 95 78.9
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 7.1e-38 160.6 96 78.1
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 7.1e-38 160.6 96 78.1
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 9.2e-38 160.2 95 78.9
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 9.2e-38 160.2 95 78.9
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 9.2e-38 160.2 96 78.1
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 9.2e-38 160.2 96 77.1
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 1.2e-37 159.8 99 76.8
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 1.6e-37 159.5 95 80.0
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 1.6e-37 159.5 95 78.9
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 1.6e-37 159.5 96 78.1
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 1.6e-37 159.5 95 78.9
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 2.1e-37 159.1 95 78.9
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 2.1e-37 159.1 96 78.1
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 2.1e-37 159.1 95 78.9
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 3.5e-37 158.3 101 77.2
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 4.6e-37 157.9 95 78.9
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 6.0e-37 157.5 95 77.9
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 6.0e-37 157.5 95 77.9
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 7.8e-37 157.1 95 76.8
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 7.8e-37 157.1 95 77.9
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 7.8e-37 157.1 95 75.8
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 7.8e-37 157.1 96 77.1
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 7.8e-37 157.1 95 78.9
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 7.8e-37 157.1 95 78.9
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 7.8e-37 157.1 95 78.9
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 1.0e-36 156.8 95 77.9
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 1.0e-36 156.8 96 76.0
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 1.0e-36 156.8 95 76.8
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 1.3e-36 156.4 92 79.3
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 1.3e-36 156.4 96 77.1
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 1.3e-36 156.4 95 77.9
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 1.3e-36 156.4 95 77.9
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 1.7e-36 156.0 95 77.9
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 2.3e-36 155.6 96 76.0
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.3e-36 155.6 99 73.7
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 3.0e-36 155.2 95 76.8
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 3.0e-36 155.2 95 75.8
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 3.9e-36 154.8 95 76.8
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 3.9e-36 154.8 95 76.8
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 5.1e-36 154.5 91 80.2
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 6.6e-36 154.1 95 76.8
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 6.6e-36 154.1 95 75.8
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 8.6e-36 153.7 95 75.8
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.1e-35 153.3 95 75.8
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 3.3e-35 151.8 95 74.7
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 4.3e-35 151.4 96 71.9
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 4.3e-35 151.4 100 70.0
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 7.3e-35 150.6 95 73.7
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 1.6e-34 149.4 95 73.7
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 2.1e-34 149.1 109 69.7
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 6.2e-34 147.5 96 70.8
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 8.1e-34 147.1 83 81.9
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 1.1e-33 146.7 116 63.8
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 1.1e-33 146.7 117 64.1
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 4.0e-33 144.8 85 80.0
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 4.4e-32 141.4 96 64.6
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 6.4e-31 137.5 96 62.5
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 2.7e-29 132.1 99 66.7
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 1.9e-27 125.9 102 57.8
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 1.4e-25 119.8 82 74.4
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 1.4e-25 119.8 97 64.9
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 1.4e-25 119.8 97 64.9
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 6.9e-25 117.5 67 76.1
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 6.9e-25 117.5 94 58.5
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.7e-23 112.8 94 57.4
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 1.4e-22 109.8 104 56.7
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 1.6e-21 106.3 94 50.0
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 7.8e-21 104.0 96 53.1
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 7.3e-19 97.4 101 52.5
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.1e-18 95.9 101 51.5
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.1e-17 93.6 101 50.5
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 2.2e-15 85.9 103 47.6
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 3.8e-15 85.1 53 75.5
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 1.4e-14 83.2 46 82.6
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 4.2e-14 81.6 52 73.1
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 4.2e-14 81.6 50 74.0
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 4.6e-13 78.2 92 47.8
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 2.5e-11 72.4 100 42.0
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 8.4e-07 57.4 42 64.3
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.9e-06 56.2 95 37.9


User provided reference genes

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