Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 0.0e+00 1879.0 929 100.0
Pp3c17_9425 Physcomitrium patens HOM05D051217 ORTHO05D037335 3.2e-56 224.6 351 33.9
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 2.9e-36 158.3 298 34.6
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.1e-35 156.4 296 32.4
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 4.1e-35 154.5 291 33.3
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 4.1e-35 154.5 292 33.6
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.6e-34 152.5 296 33.8
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 2.7e-34 151.8 301 32.2
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 4.6e-34 151.0 295 33.2
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 4.6e-34 151.0 310 32.6
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 6.0e-34 150.6 330 31.8
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 6.0e-34 150.6 330 31.8
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 6.0e-34 150.6 294 32.7
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 6.0e-34 150.6 294 32.7
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 7.8e-34 150.2 294 33.3
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 7.8e-34 150.2 291 33.0
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.0e-33 149.8 310 31.6
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 1.0e-33 149.8 295 32.9
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 1.3e-33 149.4 291 31.6
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 1.3e-33 149.4 321 32.4
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 1.3e-33 149.4 330 32.1
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 3.9e-33 147.9 312 32.7
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 5.0e-33 147.5 356 30.6
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 5.0e-33 147.5 293 32.8
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 5.0e-33 147.5 293 32.8
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 5.0e-33 147.5 321 31.5
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 6.6e-33 147.1 294 33.0
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 6.6e-33 147.1 293 32.8
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 6.6e-33 147.1 294 32.3
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.1e-32 146.4 328 31.1
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.1e-32 146.4 336 30.4
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 1.9e-32 145.6 329 31.0
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 1.9e-32 145.6 294 33.0
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 2.5e-32 145.2 318 31.1
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 2.5e-32 145.2 312 32.1
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 2.5e-32 145.2 310 31.3
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.5e-32 145.2 310 31.3
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 2.5e-32 145.2 280 33.6
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 2.5e-32 145.2 307 31.3
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.3e-32 144.8 310 31.3
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 3.3e-32 144.8 438 27.4
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 3.3e-32 144.8 438 27.4
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 5.6e-32 144.1 320 30.6
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 5.6e-32 144.1 308 31.5
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 5.6e-32 144.1 296 31.8
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 7.3e-32 143.7 310 31.0
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 7.3e-32 143.7 292 32.5
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 7.3e-32 143.7 296 31.4
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 9.5e-32 143.3 339 30.7
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 9.5e-32 143.3 292 32.2
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 1.2e-31 142.9 315 30.5
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.2e-31 142.9 310 31.0
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.2e-31 142.9 292 32.2
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.2e-31 142.9 292 32.2
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 1.2e-31 142.9 329 30.7
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 1.2e-31 142.9 310 31.0
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 1.2e-31 142.9 294 32.3
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 1.6e-31 142.5 296 31.8
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.6e-31 142.5 294 31.6
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.6e-31 142.5 294 31.6
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 1.6e-31 142.5 312 30.8
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 2.1e-31 142.1 341 31.4
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.1e-31 142.1 292 32.2
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 2.1e-31 142.1 296 31.1
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 2.1e-31 142.1 296 31.1
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 3.6e-31 141.4 330 31.5
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 3.6e-31 141.4 318 30.2
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 4.7e-31 141.0 293 32.1
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 4.7e-31 141.0 316 30.7
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 4.7e-31 141.0 310 31.0
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 6.2e-31 140.6 431 26.7
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 6.2e-31 140.6 330 29.7
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 1.1e-30 139.8 295 31.2
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 1.4e-30 139.4 314 31.2
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 1.8e-30 139.0 292 31.2
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 1.8e-30 139.0 314 30.9
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 1.8e-30 139.0 309 32.0
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 2.3e-30 138.7 296 30.7
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 2.3e-30 138.7 339 30.7
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 2.3e-30 138.7 292 30.8
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 3.1e-30 138.3 318 30.2
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 3.1e-30 138.3 336 29.2
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 5.2e-30 137.5 295 31.2
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 6.8e-30 137.1 295 31.2
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 8.9e-30 136.7 291 32.0
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 8.9e-30 136.7 280 32.1
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 8.9e-30 136.7 298 30.5
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 1.2e-29 136.3 296 31.4
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 1.2e-29 136.3 296 29.7
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 1.2e-29 136.3 343 29.2
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.5e-29 136.0 350 30.3
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 2.0e-29 135.6 307 30.9
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 2.0e-29 135.6 294 30.6
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 2.6e-29 135.2 321 31.8
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 2.6e-29 135.2 295 30.5
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 4.4e-29 134.4 302 29.8
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 4.4e-29 134.4 305 30.5
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 5.8e-29 134.0 303 30.4
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 5.8e-29 134.0 295 30.8
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 7.5e-29 133.7 298 31.2
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 7.5e-29 133.7 312 30.4
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 9.8e-29 133.3 297 30.3
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 1.3e-28 132.9 296 31.4
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 1.3e-28 132.9 300 30.7
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 1.7e-28 132.5 344 29.4
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 1.7e-28 132.5 295 30.8
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 1.7e-28 132.5 295 30.8
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 1.7e-28 132.5 295 30.8
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 2.2e-28 132.1 295 30.8
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 2.2e-28 132.1 295 30.8
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 2.2e-28 132.1 298 30.5
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 4.9e-28 131.0 386 26.7
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 8.3e-28 130.2 297 30.3
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 8.3e-28 130.2 297 30.3
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 8.3e-28 130.2 297 30.3
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.4e-27 129.4 303 29.0
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 1.9e-27 129.0 296 30.7
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 2.4e-27 128.6 298 30.5
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 2.4e-27 128.6 260 32.3
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 3.2e-27 128.3 281 30.6
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 3.2e-27 128.3 292 31.2
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 4.1e-27 127.9 403 26.3
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 9.2e-27 126.7 286 30.4
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 4.6e-26 124.4 329 29.2
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 1.0e-25 123.2 346 29.5
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 9.5e-24 116.7 295 30.2
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 3.6e-23 114.8 297 28.3
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 8.1e-23 113.6 296 30.7
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 5.4e-19 100.9 350 26.9
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 1.3e-17 96.3 191 31.9
SMO334G0060 Selaginella moellendorffii HOM05D004961 ORTHO05D377666 1.9e-16 92.4 241 26.1
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 3.3e-08 65.1 194 22.7
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 6.9e-06 57.4 116 29.3


User provided reference genes

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